Wall clock time and date at job start Tue Mar 31 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51575 * 135.78043 * 2 1 4 4 C 1.53838 * 86.75735 * 154.86798 * 3 2 1 5 5 C 1.53007 * 113.65280 * 270.22082 * 4 3 2 6 6 C 1.50696 * 113.66472 * 139.26977 * 4 3 2 7 7 O 1.21282 * 119.99627 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00466 * 179.97438 * 6 4 3 9 9 C 1.46502 * 120.00144 * 179.97438 * 8 6 4 10 10 H 1.08994 * 109.46893 * 35.00037 * 9 8 6 11 11 C 1.53000 * 109.46861 * 275.00142 * 9 8 6 12 12 C 1.53001 * 109.46798 * 155.00412 * 9 8 6 13 13 C 1.53000 * 109.46886 * 294.99603 * 12 9 8 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 9 15 15 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00037 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00126 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99653 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99758 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46920 * 90.00220 * 20 18 16 22 22 H 1.48494 * 109.47145 * 210.00039 * 20 18 16 23 23 H 1.48493 * 109.47253 * 330.00674 * 20 18 16 24 24 C 1.51579 * 135.78103 * 180.02562 * 2 1 3 25 25 H 1.07998 * 120.00039 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99990 * 180.02562 * 1 2 3 27 27 H 1.08996 * 113.66899 * 40.39549 * 3 2 1 28 28 H 1.09009 * 113.66373 * 269.33031 * 3 2 1 29 29 H 1.09004 * 109.46841 * 298.33280 * 5 4 3 30 30 H 1.08993 * 109.47158 * 58.33217 * 5 4 3 31 31 H 1.08998 * 109.46951 * 178.33200 * 5 4 3 32 32 H 0.97001 * 119.99794 * 0.02562 * 8 6 4 33 33 H 1.09002 * 109.46818 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47242 * 299.99688 * 11 9 8 35 35 H 1.09000 * 109.47237 * 60.00028 * 11 9 8 36 36 H 1.09001 * 109.46652 * 174.99948 * 12 9 8 37 37 H 1.08992 * 109.47514 * 55.00037 * 12 9 8 38 38 H 1.09002 * 109.47398 * 300.00496 * 13 12 9 39 39 H 1.09001 * 109.47194 * 60.00677 * 13 12 9 40 40 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 42 42 H 0.97004 * 119.99396 * 0.02562 * 15 14 13 43 43 H 0.97001 * 119.99359 * 179.97438 * 19 18 16 44 44 H 1.09006 * 113.66184 * 90.67152 * 24 2 1 45 45 H 1.08994 * 113.67052 * 319.59958 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3037 -0.0001 0.6523 5 6 3.2466 0.0010 2.1813 6 6 4.7130 -0.0001 0.1186 7 8 5.0339 0.7878 -0.7458 8 7 5.6167 -0.8754 0.6017 9 6 6.9866 -0.8757 0.0824 10 1 7.2857 0.1455 -0.1538 11 6 7.0518 -1.7321 -1.1838 12 6 7.9319 -1.4530 1.1378 13 6 7.9613 -0.5284 2.3565 14 6 8.9071 -1.1053 3.4117 15 7 8.9348 -0.2204 4.5789 16 6 9.7170 -0.5347 5.6580 17 1 10.3138 -1.4347 5.6485 18 6 9.7436 0.3041 6.7638 19 7 9.0165 1.4013 6.7751 20 14 10.8100 -0.1250 8.2361 21 1 12.1585 0.4722 8.0614 22 1 10.1869 0.4127 9.4721 23 1 10.9327 -1.6008 8.3452 24 6 2.3964 -1.0571 -0.0005 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.1797 1.9071 0.6469 28 1 2.7180 1.3539 -0.9984 29 1 3.5895 0.9651 2.5569 30 1 2.2208 -0.1717 2.5067 31 1 3.8889 -0.7895 2.5695 32 1 5.3599 -1.5058 1.2928 33 1 8.0711 -1.7326 -1.5699 34 1 6.7526 -2.7533 -0.9475 35 1 6.3782 -1.3209 -1.9357 36 1 8.9354 -1.5357 0.7203 37 1 7.5812 -2.4400 1.4389 38 1 8.3121 0.4587 2.0554 39 1 6.9578 -0.4456 2.7740 40 1 8.5566 -2.0925 3.7129 41 1 9.9105 -1.1878 2.9941 42 1 8.3984 0.5878 4.5875 43 1 9.0349 1.9872 7.5480 44 1 2.7181 -1.3534 -0.9990 45 1 2.1798 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485736310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:30 Heat of formation + Delta-G solvation = -25.704648 kcal Electronic energy + Delta-G solvation = -21918.197491 eV Core-core repulsion = 18742.560217 eV Total energy + Delta-G solvation = -3175.637274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70233 -39.32073 -37.77628 -36.48431 -34.22338 -33.04424 -31.88957 -30.71626 -28.59458 -27.25287 -26.90363 -25.17964 -24.35817 -22.38504 -21.72214 -20.72650 -19.12532 -18.69707 -17.90414 -17.43795 -16.65774 -16.27839 -15.97339 -15.60593 -15.54997 -15.39226 -15.14552 -15.06839 -14.45859 -14.36575 -13.84929 -13.53554 -13.36703 -13.26566 -13.09622 -13.02002 -12.84233 -12.77675 -12.42810 -12.38518 -12.22683 -12.05635 -11.90375 -11.82001 -11.71066 -11.49433 -11.16140 -10.93658 -10.68137 -10.06668 -10.00050 -9.01071 -7.96032 -5.25474 1.30900 1.46862 1.49084 1.57599 1.60505 2.27246 2.55634 3.33539 3.37676 3.47064 3.56859 3.63028 3.90047 3.96867 4.02635 4.10681 4.29218 4.40408 4.44239 4.58788 4.64684 4.68301 4.76807 4.78476 4.81867 4.85540 4.86458 4.91796 4.94385 5.00602 5.00790 5.12571 5.20100 5.25871 5.30607 5.38112 5.42814 5.50156 5.55940 5.60681 5.99733 6.26467 6.57691 7.26344 7.31956 8.09109 8.31236 9.27769 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.003273 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.113848 B = 8553.464535 C = 9562.797911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.161 4.161 3 C -0.090 4.090 4 C -0.104 4.104 5 C -0.125 4.125 6 C 0.527 3.473 7 O -0.585 6.585 8 N -0.709 5.709 9 C 0.141 3.859 10 H 0.061 0.939 11 C -0.153 4.153 12 C -0.109 4.109 13 C -0.113 4.113 14 C 0.150 3.850 15 N -0.751 5.751 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.267 1.267 24 C -0.077 4.077 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.411 0.589 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.019 0.981 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.091 0.909 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -9.012 -16.055 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.128 4.128 4 C -0.107 4.107 5 C -0.183 4.183 6 C 0.314 3.686 7 O -0.465 6.465 8 N -0.361 5.361 9 C 0.037 3.963 10 H 0.079 0.921 11 C -0.211 4.211 12 C -0.147 4.147 13 C -0.151 4.151 14 C 0.024 3.976 15 N -0.393 5.393 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.192 1.192 24 C -0.114 4.114 25 H 0.131 0.869 26 H 0.141 0.859 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.869 -8.599 -16.572 23.868 hybrid contribution 0.476 0.507 1.201 1.387 sum -14.393 -8.093 -15.372 22.560 Atomic orbital electron populations 1.23136 0.92904 1.03375 1.00133 1.22720 0.94136 0.97217 1.02084 1.22221 0.93219 0.96201 1.01133 1.21991 0.89785 1.01070 0.97836 1.21589 1.03920 1.02698 0.90071 1.20730 0.87503 0.79273 0.81077 1.90653 1.80884 1.41145 1.33810 1.46083 1.10664 1.37415 1.41889 1.20975 0.81191 0.99979 0.94173 0.92113 1.22085 1.02785 1.00146 0.96122 1.21745 1.00301 0.99241 0.93402 1.21589 0.99208 0.98844 0.95417 1.20852 0.96823 0.93133 0.86762 1.42663 1.53921 1.26922 1.15842 1.19675 1.18409 1.05283 0.94524 0.90501 1.25628 1.02308 0.97438 1.01674 1.69831 1.45845 1.15221 1.31323 0.85104 0.77878 0.77977 0.78598 1.21453 1.22103 1.19153 1.22213 0.92075 0.95923 1.01167 0.86892 0.85892 0.90553 0.89551 0.92872 0.89861 0.90808 0.75197 0.90429 0.90734 0.93880 0.89212 0.89260 0.93802 0.92282 0.95544 0.96328 0.79707 0.93998 0.89086 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 14.71 67.78 1.00 -1.07 16 2 C -0.16 -2.66 6.60 -15.99 -0.11 -2.77 16 3 C -0.09 -1.89 6.98 30.41 0.21 -1.68 16 4 C -0.10 -2.06 1.27 -52.42 -0.07 -2.13 16 5 C -0.13 -2.28 8.98 71.98 0.65 -1.64 16 6 C 0.53 13.41 6.90 87.66 0.60 14.01 16 7 O -0.58 -19.70 15.56 -3.03 -0.05 -19.75 16 8 N -0.71 -15.09 4.42 -442.54 -1.95 -17.04 16 9 C 0.14 3.14 2.58 44.99 0.12 3.26 16 10 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 11 C -0.15 -2.80 9.48 71.98 0.68 -2.12 16 12 C -0.11 -2.35 4.75 30.59 0.15 -2.21 16 13 C -0.11 -3.49 5.22 30.59 0.16 -3.33 16 14 C 0.15 5.88 6.26 86.38 0.54 6.43 16 15 N -0.75 -39.00 5.60 -343.46 -1.92 -40.92 16 16 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 19 N -0.97 -60.43 13.06 21.65 0.28 -60.14 16 20 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C -0.08 -1.19 7.18 30.41 0.22 -0.97 16 25 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 26 H 0.12 1.18 8.06 -2.91 -0.02 1.15 16 27 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 28 H 0.09 2.10 7.42 -2.38 -0.02 2.09 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.28 7.70 -2.39 -0.02 1.26 16 31 H 0.07 1.20 7.04 -2.39 -0.02 1.19 16 32 H 0.41 6.93 7.50 -92.71 -0.70 6.23 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.85 7.75 -2.39 -0.02 1.83 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 43 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.09 1.47 8.09 -2.38 -0.02 1.45 16 45 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -71.39 368.39 3.39 -68.00 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.45 Total: 32.95 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 5.46 Total: -11.47 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.60 Total: -118.11 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.39 3.39 -68.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485736310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.296 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds