Wall clock time and date at job start Tue Mar 31 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47400 * 2 1 4 4 C 1.52995 * 109.47154 * 239.99201 * 2 1 3 5 5 C 1.50705 * 109.46982 * 65.00551 * 4 2 1 6 6 O 1.21283 * 119.99759 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00344 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99992 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47035 * 180.02562 * 8 7 5 10 10 H 1.09002 * 110.88822 * 308.88664 * 9 8 7 11 11 C 1.55153 * 111.00503 * 185.00063 * 9 8 7 12 12 C 1.54323 * 103.10236 * 206.33608 * 11 9 8 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 C 1.36932 * 125.59278 * 181.00707 * 13 12 11 15 15 H 1.08009 * 119.99968 * 180.02562 * 14 13 12 16 16 C 1.38806 * 120.00375 * 0.02562 * 14 13 12 17 17 N 1.31621 * 119.99804 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00331 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46931 * 59.99921 * 18 16 14 20 20 H 1.48500 * 109.47065 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47241 * 300.00252 * 18 16 14 22 22 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 23 23 C 1.53008 * 109.47015 * 119.99670 * 2 1 3 24 24 C 1.52994 * 117.49939 * 248.74814 * 23 2 1 25 25 C 1.52999 * 117.49787 * 180.08450 * 23 2 1 26 26 H 1.09003 * 109.47421 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00094 * 1 2 3 28 28 H 1.08998 * 109.47056 * 60.00386 * 1 2 3 29 29 H 1.08997 * 109.48072 * 305.00384 * 4 2 1 30 30 H 1.09001 * 109.47435 * 184.99958 * 4 2 1 31 31 H 0.97002 * 119.99905 * 359.97438 * 7 5 4 32 32 H 1.08994 * 109.47022 * 60.00359 * 8 7 5 33 33 H 1.08994 * 109.47334 * 299.99712 * 8 7 5 34 34 H 1.09002 * 110.72030 * 324.78875 * 11 9 8 35 35 H 1.09003 * 110.72184 * 87.88526 * 11 9 8 36 36 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 37 37 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 38 38 H 0.97005 * 120.00149 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.36462 * 217.05803 * 22 13 12 40 40 H 1.08996 * 110.46287 * 94.77884 * 22 13 12 41 41 H 1.09004 * 115.54902 * 34.41582 * 23 2 1 42 42 H 1.09002 * 117.49835 * 359.97438 * 24 23 2 43 43 H 1.08996 * 117.50288 * 145.02377 * 24 23 2 44 44 H 1.08998 * 117.50040 * 214.97383 * 25 23 2 45 45 H 1.08995 * 117.50194 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9853 -0.3916 -3.7000 8 6 1.5973 0.3647 -4.8932 9 6 2.1074 -0.3566 -6.1424 10 1 3.1691 -0.5863 -6.0523 11 6 1.8253 0.4771 -7.4202 12 6 1.7461 -0.5952 -8.5272 13 7 1.4272 -1.8750 -7.8671 14 6 1.2880 -3.0833 -8.4962 15 1 1.0520 -3.9671 -7.9220 16 6 1.4501 -3.1723 -9.8719 17 7 1.7372 -2.0952 -10.5717 18 14 1.2595 -4.8205 -10.7302 19 1 -0.1097 -5.3453 -10.4956 20 1 1.4798 -4.6475 -12.1885 21 1 2.2563 -5.7788 -10.1887 22 6 1.2827 -1.6385 -6.4191 23 6 2.0400 -0.7212 1.2494 24 6 2.7392 0.1231 2.3165 25 6 3.5550 -0.8263 1.4354 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7996 -1.2055 31 1 2.4898 -1.2152 -3.7906 32 1 2.0313 1.3634 -4.8473 33 1 0.5110 0.4421 -4.9371 34 1 0.8788 1.0105 -7.3315 35 1 2.6416 1.1727 -7.6148 36 1 0.9619 -0.3365 -9.2386 37 1 2.7050 -0.6699 -9.0402 38 1 1.8502 -2.1573 -11.5332 39 1 1.6874 -2.4789 -5.8552 40 1 0.2357 -1.4789 -6.1617 41 1 1.4317 -1.5594 1.5895 42 1 2.8363 1.1924 2.1284 43 1 2.5915 -0.1597 3.3587 44 1 3.9435 -1.7334 1.8984 45 1 4.1884 -0.3821 0.6676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663645066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:57 Heat of formation + Delta-G solvation = -7.993229 kcal Electronic energy + Delta-G solvation = -21809.663820 eV Core-core repulsion = 18634.794571 eV Total energy + Delta-G solvation = -3174.869249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97767 -38.18558 -37.48140 -34.66024 -33.27274 -32.49327 -29.96505 -28.73060 -27.55801 -25.41467 -23.93492 -23.09470 -22.58620 -20.74330 -20.03403 -19.98513 -19.44197 -17.14314 -16.65978 -16.20064 -15.84231 -15.40298 -14.90448 -14.64429 -14.52362 -13.92784 -13.69083 -13.29100 -13.17603 -12.93735 -12.37235 -12.22786 -11.94672 -11.84962 -11.73078 -11.47706 -11.44733 -11.31922 -10.99978 -10.91022 -10.78451 -10.45709 -10.38221 -10.22012 -10.16831 -9.99867 -9.87560 -9.65602 -9.54879 -8.90834 -8.60755 -6.84043 -5.71610 -3.05203 2.71002 3.23345 3.39782 3.43990 3.45420 3.56031 4.37217 4.48911 4.58043 4.64906 4.76956 4.93745 5.02598 5.12825 5.22742 5.30428 5.30988 5.39343 5.43494 5.50463 5.55069 5.60675 5.65544 5.68711 5.83936 5.87438 5.90415 5.94332 6.06141 6.07719 6.19075 6.30352 6.35193 6.48795 6.51648 6.54154 6.70085 6.91448 7.54907 7.59693 7.62507 7.81837 8.24994 8.30814 9.21024 9.81875 10.48208 11.40195 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.002860 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.516386 B = 9786.822350 C =10254.956530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.043 4.043 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.509 3.491 6 O -0.544 6.544 7 N -0.726 5.726 8 C 0.132 3.868 9 C -0.117 4.117 10 H 0.079 0.921 11 C -0.135 4.135 12 C 0.178 3.822 13 N -0.607 5.607 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.143 3.857 23 C -0.148 4.148 24 C -0.180 4.180 25 C -0.183 4.183 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.253 0.747 39 H 0.035 0.965 40 H 0.019 0.981 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 3.856 21.459 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.422 6.422 7 N -0.378 5.378 8 C 0.008 3.992 9 C -0.137 4.137 10 H 0.097 0.903 11 C -0.174 4.174 12 C 0.053 3.947 13 N -0.334 5.334 14 C -0.358 4.358 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.017 3.983 23 C -0.166 4.166 24 C -0.217 4.217 25 C -0.220 4.220 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.401 4.517 21.280 21.887 hybrid contribution 0.217 -1.351 -0.603 1.495 sum 2.618 3.166 20.677 21.081 Atomic orbital electron populations 1.21922 0.94258 1.01524 1.03069 1.20442 0.96575 0.98737 0.90446 0.90432 1.21746 1.02891 1.00441 0.92587 1.20686 0.79235 0.85749 0.84719 1.90656 1.40008 1.24818 1.86731 1.46142 1.57623 1.27961 1.06034 1.21380 1.00161 0.94712 0.82900 1.22609 1.00300 0.97534 0.93254 0.90293 1.22857 1.00443 0.98532 0.95612 1.21227 1.00325 0.82222 0.90908 1.44590 1.83157 1.05160 1.00468 1.19010 1.41341 0.85192 0.90226 0.90563 1.24806 1.01972 0.97445 0.96281 1.69954 1.54489 1.26466 1.06104 0.86196 0.77905 0.82994 0.78636 1.21184 1.21590 1.21184 1.21561 0.95857 0.93669 0.87221 1.22421 0.94663 1.01888 0.97657 1.23013 1.04744 0.97708 0.96200 1.22973 0.93988 1.01773 1.03270 0.93274 0.92952 0.90416 0.88799 0.88999 0.76458 0.91812 0.91447 0.92241 0.92041 0.93849 0.93534 0.93697 0.94684 0.96383 0.87781 0.88792 0.89000 0.88878 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.92 37.16 0.33 -1.20 16 2 C -0.04 -0.41 2.19 -90.62 -0.20 -0.61 16 3 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 4 C -0.14 -1.25 5.09 -27.88 -0.14 -1.39 16 5 C 0.51 6.43 7.55 -10.99 -0.08 6.35 16 6 O -0.54 -8.73 13.96 5.56 0.08 -8.65 16 7 N -0.73 -8.93 5.50 -60.30 -0.33 -9.26 16 8 C 0.13 1.89 5.13 -4.04 -0.02 1.87 16 9 C -0.12 -1.93 3.05 -88.47 -0.27 -2.20 16 10 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 11 C -0.14 -2.47 6.41 -24.90 -0.16 -2.63 16 12 C 0.18 4.29 5.39 -2.81 -0.02 4.27 16 13 N -0.61 -15.42 3.41 -169.69 -0.58 -16.00 16 14 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 15 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -27.14 10.31 55.49 0.57 -26.57 16 18 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.14 2.86 6.65 -2.52 -0.02 2.84 16 23 C -0.15 -1.15 5.15 -90.62 -0.47 -1.62 16 24 C -0.18 -1.30 10.18 -26.69 -0.27 -1.57 16 25 C -0.18 -1.29 9.68 -26.69 -0.26 -1.55 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.70 7.13 -51.93 -0.37 0.33 16 31 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 34 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 37 H 0.05 1.24 7.39 -51.93 -0.38 0.85 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 41 H 0.10 0.76 8.11 -51.93 -0.42 0.34 16 42 H 0.09 0.69 8.05 -51.93 -0.42 0.28 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.66 7.59 -51.93 -0.39 0.27 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -31.63 356.44 -9.76 -41.39 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.02 Total: 0.99 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.82 Total: -4.31 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.34 Total: -51.83 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.63 -9.76 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.398 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds