Wall clock time and date at job start Tue Mar 31 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47400 * 2 1 4 4 C 1.52995 * 109.47154 * 239.99201 * 2 1 3 5 5 C 1.50705 * 109.46982 * 65.00551 * 4 2 1 6 6 O 1.21283 * 119.99759 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00344 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99992 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47035 * 180.02562 * 8 7 5 10 10 H 1.09002 * 110.88822 * 308.88664 * 9 8 7 11 11 C 1.55153 * 111.00503 * 185.00063 * 9 8 7 12 12 C 1.54323 * 103.10236 * 206.33608 * 11 9 8 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 C 1.36932 * 125.59278 * 181.00707 * 13 12 11 15 15 H 1.08009 * 119.99968 * 180.02562 * 14 13 12 16 16 C 1.38806 * 120.00375 * 0.02562 * 14 13 12 17 17 N 1.31621 * 119.99804 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00331 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46931 * 59.99921 * 18 16 14 20 20 H 1.48500 * 109.47065 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47241 * 300.00252 * 18 16 14 22 22 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 23 23 C 1.53008 * 109.47015 * 119.99670 * 2 1 3 24 24 C 1.52994 * 117.49939 * 248.74814 * 23 2 1 25 25 C 1.52999 * 117.49787 * 180.08450 * 23 2 1 26 26 H 1.09003 * 109.47421 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00094 * 1 2 3 28 28 H 1.08998 * 109.47056 * 60.00386 * 1 2 3 29 29 H 1.08997 * 109.48072 * 305.00384 * 4 2 1 30 30 H 1.09001 * 109.47435 * 184.99958 * 4 2 1 31 31 H 0.97002 * 119.99905 * 359.97438 * 7 5 4 32 32 H 1.08994 * 109.47022 * 60.00359 * 8 7 5 33 33 H 1.08994 * 109.47334 * 299.99712 * 8 7 5 34 34 H 1.09002 * 110.72030 * 324.78875 * 11 9 8 35 35 H 1.09003 * 110.72184 * 87.88526 * 11 9 8 36 36 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 37 37 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 38 38 H 0.97005 * 120.00149 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.36462 * 217.05803 * 22 13 12 40 40 H 1.08996 * 110.46287 * 94.77884 * 22 13 12 41 41 H 1.09004 * 115.54902 * 34.41582 * 23 2 1 42 42 H 1.09002 * 117.49835 * 359.97438 * 24 23 2 43 43 H 1.08996 * 117.50288 * 145.02377 * 24 23 2 44 44 H 1.08998 * 117.50040 * 214.97383 * 25 23 2 45 45 H 1.08995 * 117.50194 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9853 -0.3916 -3.7000 8 6 1.5973 0.3647 -4.8932 9 6 2.1074 -0.3566 -6.1424 10 1 3.1691 -0.5863 -6.0523 11 6 1.8253 0.4771 -7.4202 12 6 1.7461 -0.5952 -8.5272 13 7 1.4272 -1.8750 -7.8671 14 6 1.2880 -3.0833 -8.4962 15 1 1.0520 -3.9671 -7.9220 16 6 1.4501 -3.1723 -9.8719 17 7 1.7372 -2.0952 -10.5717 18 14 1.2595 -4.8205 -10.7302 19 1 -0.1097 -5.3453 -10.4956 20 1 1.4798 -4.6475 -12.1885 21 1 2.2563 -5.7788 -10.1887 22 6 1.2827 -1.6385 -6.4191 23 6 2.0400 -0.7212 1.2494 24 6 2.7392 0.1231 2.3165 25 6 3.5550 -0.8263 1.4354 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7199 -1.2951 30 1 3.1263 -0.7996 -1.2055 31 1 2.4898 -1.2152 -3.7906 32 1 2.0313 1.3634 -4.8473 33 1 0.5110 0.4421 -4.9371 34 1 0.8788 1.0105 -7.3315 35 1 2.6416 1.1727 -7.6148 36 1 0.9619 -0.3365 -9.2386 37 1 2.7050 -0.6699 -9.0402 38 1 1.8502 -2.1573 -11.5332 39 1 1.6874 -2.4789 -5.8552 40 1 0.2357 -1.4789 -6.1617 41 1 1.4317 -1.5594 1.5895 42 1 2.8363 1.1924 2.1284 43 1 2.5915 -0.1597 3.3587 44 1 3.9435 -1.7334 1.8984 45 1 4.1884 -0.3821 0.6676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663645066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:56 Heat of formation + Delta-G solvation = -26.865426 kcal Electronic energy + Delta-G solvation = -21810.482180 eV Core-core repulsion = 18634.794571 eV Total energy + Delta-G solvation = -3175.687609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97136 -39.38238 -38.56947 -36.00885 -34.29655 -34.00647 -31.68469 -30.18730 -28.71321 -27.11419 -25.26187 -24.09430 -23.13794 -22.10693 -21.52698 -21.12491 -20.43146 -18.86260 -17.89643 -17.29634 -16.84261 -16.64419 -16.17530 -15.96388 -15.71817 -15.33236 -14.88425 -14.51911 -14.17801 -13.96992 -13.86321 -13.75354 -13.45942 -13.07480 -12.87891 -12.74777 -12.60149 -12.38324 -12.21785 -12.08638 -12.06429 -11.87232 -11.83456 -11.72585 -11.53099 -11.45476 -11.06521 -10.84136 -10.70037 -10.58631 -9.99123 -8.89785 -7.84521 -5.20130 1.46013 1.49392 1.55652 1.73734 2.27777 2.50133 2.96716 3.33679 3.61815 3.67742 3.81501 3.88862 4.02796 4.03792 4.06805 4.14809 4.24971 4.38172 4.46245 4.56656 4.62187 4.67199 4.73597 4.78023 4.83395 4.86694 4.93058 4.94093 5.05197 5.07982 5.08318 5.20029 5.24142 5.32916 5.37376 5.44166 5.45714 5.50166 5.60675 5.67549 5.78168 6.19945 6.64295 7.10101 7.34518 7.78118 8.43089 9.26000 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.002860 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.516386 B = 9786.822350 C =10254.956530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 H 0.059 0.941 4 C -0.129 4.129 5 C 0.507 3.493 6 O -0.581 6.581 7 N -0.721 5.721 8 C 0.145 3.855 9 C -0.094 4.094 10 H 0.090 0.910 11 C -0.124 4.124 12 C 0.183 3.817 13 N -0.630 5.630 14 C -0.243 4.243 15 H 0.084 0.916 16 C -0.069 4.069 17 N -0.953 5.953 18 Si 0.979 3.021 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.274 1.274 22 C 0.139 3.861 23 C -0.150 4.150 24 C -0.185 4.185 25 C -0.177 4.177 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.413 0.587 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.004 0.996 37 H 0.014 0.986 38 H 0.246 0.754 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 2.757 23.580 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 H 0.077 0.923 4 C -0.169 4.169 5 C 0.296 3.704 6 O -0.462 6.462 7 N -0.373 5.373 8 C 0.020 3.980 9 C -0.114 4.114 10 H 0.109 0.891 11 C -0.163 4.163 12 C 0.058 3.942 13 N -0.357 5.357 14 C -0.372 4.372 15 H 0.102 0.898 16 C -0.262 4.262 17 N -0.602 5.602 18 Si 0.807 3.193 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.200 1.200 22 C 0.014 3.986 23 C -0.169 4.169 24 C -0.222 4.222 25 C -0.214 4.214 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.249 0.751 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.022 0.978 37 H 0.032 0.968 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.220 3.398 23.447 23.910 hybrid contribution -0.073 -0.988 -1.223 1.574 sum 3.147 2.410 22.224 22.575 Atomic orbital electron populations 1.21874 0.95069 1.01781 1.01827 1.20373 0.95879 0.98115 0.91587 0.92254 1.21775 1.04284 1.00427 0.90380 1.21301 0.78285 0.85396 0.85463 1.90653 1.41656 1.26640 1.87229 1.46057 1.57581 1.28223 1.05417 1.21091 0.99302 0.94900 0.82678 1.22408 1.00338 0.95311 0.93310 0.89141 1.22723 1.02045 0.97279 0.94245 1.20993 0.97069 0.83890 0.92220 1.44930 1.83006 1.04836 1.02913 1.19448 1.40420 0.86522 0.90791 0.89846 1.25680 1.02448 1.00912 0.97155 1.70188 1.55836 1.28453 1.05754 0.85141 0.78174 0.79053 0.76904 1.20449 1.22205 1.19973 1.21743 0.96396 0.95972 0.84478 1.22333 0.95396 1.02124 0.97000 1.23082 1.04809 0.97533 0.96735 1.23046 0.93289 1.02032 1.03035 0.92211 0.92613 0.93210 0.86999 0.86843 0.75078 0.91165 0.92711 0.91287 0.89674 0.97817 0.96815 0.94452 0.93226 0.96624 0.86989 0.89373 0.88018 0.87714 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.92 71.98 0.64 -2.24 16 2 C -0.04 -0.70 2.19 -10.79 -0.02 -0.72 16 3 H 0.06 1.24 7.71 -2.39 -0.02 1.22 16 4 C -0.13 -2.02 5.09 29.85 0.15 -1.87 16 5 C 0.51 11.88 7.55 87.66 0.66 12.54 16 6 O -0.58 -18.26 13.96 -3.04 -0.04 -18.30 16 7 N -0.72 -15.95 5.50 -463.07 -2.55 -18.50 16 8 C 0.14 3.85 5.13 86.38 0.44 4.29 16 9 C -0.09 -2.90 3.05 -9.40 -0.03 -2.93 16 10 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 11 C -0.12 -4.40 6.41 31.78 0.20 -4.19 16 12 C 0.18 9.05 5.39 86.64 0.47 9.52 16 13 N -0.63 -32.17 3.41 -690.79 -2.35 -34.52 16 14 C -0.24 -13.57 10.28 84.03 0.86 -12.71 16 15 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 16 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 17 N -0.95 -57.84 10.31 21.65 0.22 -57.61 16 18 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C 0.14 5.37 6.65 86.86 0.58 5.95 16 23 C -0.15 -1.98 5.15 -10.79 -0.06 -2.04 16 24 C -0.18 -2.31 10.18 30.62 0.31 -2.00 16 25 C -0.18 -2.00 9.68 30.62 0.30 -1.71 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.26 5.95 -2.39 -0.01 1.25 16 29 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.33 7.13 -2.39 -0.02 1.31 16 31 H 0.41 7.28 8.47 -92.71 -0.79 6.49 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 34 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.00 0.20 7.51 -2.39 -0.02 0.18 16 37 H 0.01 0.75 7.39 -2.38 -0.02 0.73 16 38 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.02 0.63 7.90 -2.39 -0.02 0.61 16 41 H 0.11 1.33 8.11 -2.38 -0.02 1.31 16 42 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 1.07 7.59 -2.39 -0.02 1.05 16 Total: -1.00 -70.23 356.44 2.45 -67.78 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.17 Total: 15.03 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.98 Total: -1.60 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.68 Total: -110.63 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.04 Total: -18.30 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.23 2.45 -67.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.917 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds