Wall clock time and date at job start Tue Mar 31 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47000 * 2 1 4 4 C 1.53005 * 109.46987 * 120.00294 * 2 1 3 5 5 C 1.50692 * 109.46815 * 294.99507 * 4 2 1 6 6 O 1.21277 * 120.00505 * 0.02562 * 5 4 2 7 7 N 1.34785 * 119.99472 * 180.02562 * 5 4 2 8 8 C 1.46507 * 119.99642 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47045 * 179.97438 * 8 7 5 10 10 H 1.09000 * 110.64081 * 56.68831 * 9 8 7 11 11 C 1.55157 * 110.72175 * 180.02562 * 9 8 7 12 12 C 1.54912 * 101.57970 * 153.86848 * 11 9 8 13 13 N 1.47423 * 104.83318 * 322.98617 * 12 11 9 14 14 C 1.36932 * 125.64957 * 204.16681 * 13 12 11 15 15 H 1.08007 * 120.00362 * 161.47681 * 14 13 12 16 16 C 1.38812 * 120.00085 * 341.47767 * 14 13 12 17 17 N 1.31621 * 120.00048 * 157.61794 * 16 14 13 18 18 Si 1.86803 * 119.99916 * 337.61797 * 16 14 13 19 19 H 1.48498 * 109.46997 * 84.53766 * 18 16 14 20 20 H 1.48505 * 109.47130 * 204.53564 * 18 16 14 21 21 H 1.48493 * 109.46922 * 324.53662 * 18 16 14 22 22 C 1.47025 * 108.70162 * 24.13585 * 13 12 11 23 23 C 1.53001 * 109.46628 * 239.99842 * 2 1 3 24 24 C 1.53002 * 117.49522 * 128.74974 * 23 2 1 25 25 C 1.52999 * 117.50045 * 60.09086 * 23 2 1 26 26 H 1.09002 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46724 * 299.99663 * 1 2 3 28 28 H 1.09002 * 109.47329 * 59.99533 * 1 2 3 29 29 H 1.09000 * 109.46872 * 54.99914 * 4 2 1 30 30 H 1.09003 * 109.46250 * 174.99485 * 4 2 1 31 31 H 0.96993 * 120.00376 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47114 * 300.00214 * 8 7 5 33 33 H 1.09001 * 109.46948 * 60.00031 * 8 7 5 34 34 H 1.08998 * 110.99888 * 271.94113 * 11 9 8 35 35 H 1.09000 * 111.00225 * 35.79395 * 11 9 8 36 36 H 1.09003 * 110.36175 * 204.15336 * 12 11 9 37 37 H 1.08996 * 110.46514 * 81.87818 * 12 11 9 38 38 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.87869 * 239.52410 * 22 13 12 40 40 H 1.08999 * 110.01138 * 118.43044 * 22 13 12 41 41 H 1.09000 * 115.55283 * 274.41816 * 23 2 1 42 42 H 1.08997 * 117.49849 * 359.97438 * 24 23 2 43 43 H 1.09003 * 117.50173 * 145.02305 * 24 23 2 44 44 H 1.08997 * 117.50274 * 214.97668 * 25 23 2 45 45 H 1.09008 * 117.49702 * 359.97212 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4765 6 8 1.0111 1.0869 2.3633 7 7 1.9854 -0.3916 3.7001 8 6 1.5984 0.3654 4.8933 9 6 2.1082 -0.3559 6.1424 10 1 3.1878 -0.4971 6.0909 11 6 1.7130 0.4221 7.4253 12 6 1.6794 -0.7128 8.4793 13 7 1.1327 -1.8786 7.7612 14 6 0.4920 -2.9426 8.3379 15 1 -0.1279 -3.5906 7.7359 16 6 0.6392 -3.1884 9.6961 17 7 -0.2687 -3.8910 10.3399 18 14 2.1258 -2.5220 10.6102 19 1 1.8634 -1.1211 11.0271 20 1 2.3830 -3.3560 11.8116 21 1 3.3126 -2.5590 9.7185 22 6 1.3888 -1.7092 6.3234 23 6 2.0399 -0.7213 -1.2493 24 6 3.0762 0.0039 -2.1101 25 6 1.6373 -0.1484 -2.6096 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6053 -1.7199 1.2951 30 1 3.1263 -0.7996 1.2054 31 1 2.4899 -1.2151 3.7907 32 1 2.0331 1.3638 4.8469 33 1 0.5121 0.4437 4.9373 34 1 2.4670 1.1676 7.6779 35 1 0.7313 0.8829 7.3159 36 1 1.0287 -0.4397 9.3100 37 1 2.6851 -0.9272 8.8407 38 1 -0.1656 -4.0630 11.2889 39 1 0.4455 -1.7035 5.7771 40 1 2.0228 -2.5178 5.9596 41 1 2.1252 -1.8047 -1.1648 42 1 3.3944 0.9949 -1.7867 43 1 3.8431 -0.6024 -2.5923 44 1 1.4581 -0.8547 -3.4202 45 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663645067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:03 Heat of formation + Delta-G solvation = -4.697685 kcal Electronic energy + Delta-G solvation = -21859.546145 eV Core-core repulsion = 18684.819801 eV Total energy + Delta-G solvation = -3174.726344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.03222 -38.35939 -37.75347 -34.80628 -33.32450 -32.54927 -30.53985 -28.91983 -27.82566 -25.76302 -24.05174 -22.98493 -22.54538 -21.17962 -20.30894 -19.96920 -19.65474 -17.17550 -16.75001 -16.33432 -15.92352 -15.41606 -15.24997 -14.99633 -14.66761 -13.96625 -13.64110 -13.38696 -13.25035 -13.20884 -12.75430 -12.42960 -12.18737 -12.04528 -11.86331 -11.59527 -11.52399 -11.32023 -11.26292 -11.03118 -10.94879 -10.60667 -10.57137 -10.53920 -10.17099 -10.06649 -10.01701 -9.66765 -9.44042 -8.99818 -8.69437 -7.05651 -5.95675 -3.26076 2.65437 3.17905 3.33488 3.46520 3.48808 3.52832 4.35477 4.51483 4.53698 4.64544 4.71096 4.82296 4.94523 4.98632 5.07944 5.10459 5.21155 5.22137 5.33008 5.37595 5.46695 5.48989 5.61602 5.62015 5.65016 5.73638 5.80151 5.83657 5.85480 5.98873 6.03328 6.10697 6.19233 6.27125 6.28564 6.44644 6.51674 6.60838 6.71927 6.74821 7.51795 7.70446 8.24382 8.30282 8.82466 9.67891 10.16901 11.20531 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.002893 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.405381 B = 9675.796620 C = 9903.988361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.043 4.043 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.542 6.542 7 N -0.728 5.728 8 C 0.133 3.867 9 C -0.117 4.117 10 H 0.079 0.921 11 C -0.121 4.121 12 C 0.110 3.890 13 N -0.609 5.609 14 C -0.243 4.243 15 H 0.091 0.909 16 C 0.021 3.979 17 N -0.909 5.909 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.303 1.303 21 H -0.277 1.277 22 C 0.141 3.859 23 C -0.149 4.149 24 C -0.183 4.183 25 C -0.179 4.179 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.402 0.598 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 8.118 -21.488 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.420 6.420 7 N -0.379 5.379 8 C 0.009 3.991 9 C -0.136 4.136 10 H 0.098 0.902 11 C -0.160 4.160 12 C -0.015 4.015 13 N -0.336 5.336 14 C -0.370 4.370 15 H 0.109 0.891 16 C -0.177 4.177 17 N -0.552 5.552 18 Si 0.715 3.285 19 H -0.212 1.212 20 H -0.231 1.231 21 H -0.203 1.203 22 C 0.015 3.985 23 C -0.167 4.167 24 C -0.220 4.220 25 C -0.216 4.216 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.236 0.764 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.917 8.696 -21.368 24.085 hybrid contribution 1.194 -0.285 0.730 1.428 sum 8.111 8.412 -20.638 23.717 Atomic orbital electron populations 1.21934 0.94324 1.01641 1.02936 1.20444 0.96486 0.98811 0.90462 0.90461 1.21728 1.02917 1.00385 0.92564 1.20665 0.79159 0.85729 0.84664 1.90661 1.39856 1.24798 1.86700 1.46107 1.57828 1.27985 1.05999 1.21383 1.00439 0.94606 0.82671 1.22468 1.00266 0.96998 0.93858 0.90217 1.22715 1.01420 0.97364 0.94527 1.21963 0.97186 0.87116 0.95247 1.44774 1.67923 1.19721 1.01203 1.18638 1.21032 1.04512 0.92800 0.89116 1.25002 0.98302 0.98228 0.96215 1.69848 1.32966 1.43333 1.09093 0.86951 0.85272 0.77565 0.78727 1.21189 1.23064 1.20339 1.21383 0.96778 0.93113 0.87192 1.22376 1.03491 0.99168 0.91645 1.23045 0.92481 1.02099 1.04337 1.22933 0.98049 1.03384 0.97197 0.93197 0.90531 0.92987 0.88729 0.88896 0.76407 0.91654 0.91127 0.91391 0.90793 0.92212 0.95708 0.92700 0.94777 0.95422 0.87771 0.88823 0.88995 0.88966 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.77 37.16 0.33 -1.21 16 2 C -0.04 -0.40 2.19 -90.62 -0.20 -0.59 16 3 H 0.08 0.81 7.71 -51.93 -0.40 0.41 16 4 C -0.14 -1.18 5.16 -27.88 -0.14 -1.32 16 5 C 0.51 6.17 7.55 -10.99 -0.08 6.09 16 6 O -0.54 -8.43 13.96 5.56 0.08 -8.35 16 7 N -0.73 -8.36 5.40 -60.30 -0.33 -8.68 16 8 C 0.13 1.75 4.99 -4.04 -0.02 1.73 16 9 C -0.12 -1.72 3.02 -88.79 -0.27 -1.99 16 10 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.12 -1.95 6.53 -24.58 -0.16 -2.11 16 12 C 0.11 2.35 4.70 -2.53 -0.01 2.34 16 13 N -0.61 -14.60 3.21 -170.07 -0.55 -15.15 16 14 C -0.24 -6.90 10.57 -15.06 -0.16 -7.06 16 15 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 17 N -0.91 -28.11 13.97 55.49 0.78 -27.34 16 18 Si 0.88 22.56 24.27 -169.99 -4.13 18.43 16 19 H -0.28 -6.98 6.49 56.52 0.37 -6.61 16 20 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 21 H -0.28 -6.95 6.66 56.52 0.38 -6.57 16 22 C 0.14 2.65 6.52 -3.06 -0.02 2.63 16 23 C -0.15 -1.13 5.15 -90.62 -0.47 -1.59 16 24 C -0.18 -1.28 10.18 -26.69 -0.27 -1.55 16 25 C -0.18 -1.28 9.74 -26.69 -0.26 -1.54 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.97 5.95 -51.92 -0.31 0.66 16 28 H 0.05 0.48 7.29 -51.93 -0.38 0.11 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.40 3.83 8.33 -40.82 -0.34 3.49 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 36 H 0.06 1.38 6.64 -51.93 -0.34 1.03 16 37 H 0.03 0.55 5.57 -51.93 -0.29 0.26 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.03 0.66 7.76 -51.93 -0.40 0.25 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.69 7.61 -51.92 -0.40 0.30 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -32.78 350.34 -8.65 -41.43 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.96 Total: 0.05 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.83 Total: -5.67 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.10 Total: -51.17 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.13 Total: 18.43 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.78 -8.65 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.732 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds