Wall clock time and date at job start Tue Mar 31 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47000 * 2 1 4 4 C 1.53005 * 109.46987 * 120.00294 * 2 1 3 5 5 C 1.50692 * 109.46815 * 294.99507 * 4 2 1 6 6 O 1.21277 * 120.00505 * 0.02562 * 5 4 2 7 7 N 1.34785 * 119.99472 * 180.02562 * 5 4 2 8 8 C 1.46507 * 119.99642 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47045 * 179.97438 * 8 7 5 10 10 H 1.09000 * 110.64081 * 56.68831 * 9 8 7 11 11 C 1.55157 * 110.72175 * 180.02562 * 9 8 7 12 12 C 1.54912 * 101.57970 * 153.86848 * 11 9 8 13 13 N 1.47423 * 104.83318 * 322.98617 * 12 11 9 14 14 C 1.36932 * 125.64957 * 204.16681 * 13 12 11 15 15 H 1.08007 * 120.00362 * 161.47681 * 14 13 12 16 16 C 1.38812 * 120.00085 * 341.47767 * 14 13 12 17 17 N 1.31621 * 120.00048 * 157.61794 * 16 14 13 18 18 Si 1.86803 * 119.99916 * 337.61797 * 16 14 13 19 19 H 1.48498 * 109.46997 * 84.53766 * 18 16 14 20 20 H 1.48505 * 109.47130 * 204.53564 * 18 16 14 21 21 H 1.48493 * 109.46922 * 324.53662 * 18 16 14 22 22 C 1.47025 * 108.70162 * 24.13585 * 13 12 11 23 23 C 1.53001 * 109.46628 * 239.99842 * 2 1 3 24 24 C 1.53002 * 117.49522 * 128.74974 * 23 2 1 25 25 C 1.52999 * 117.50045 * 60.09086 * 23 2 1 26 26 H 1.09002 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46724 * 299.99663 * 1 2 3 28 28 H 1.09002 * 109.47329 * 59.99533 * 1 2 3 29 29 H 1.09000 * 109.46872 * 54.99914 * 4 2 1 30 30 H 1.09003 * 109.46250 * 174.99485 * 4 2 1 31 31 H 0.96993 * 120.00376 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47114 * 300.00214 * 8 7 5 33 33 H 1.09001 * 109.46948 * 60.00031 * 8 7 5 34 34 H 1.08998 * 110.99888 * 271.94113 * 11 9 8 35 35 H 1.09000 * 111.00225 * 35.79395 * 11 9 8 36 36 H 1.09003 * 110.36175 * 204.15336 * 12 11 9 37 37 H 1.08996 * 110.46514 * 81.87818 * 12 11 9 38 38 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.87869 * 239.52410 * 22 13 12 40 40 H 1.08999 * 110.01138 * 118.43044 * 22 13 12 41 41 H 1.09000 * 115.55283 * 274.41816 * 23 2 1 42 42 H 1.08997 * 117.49849 * 359.97438 * 24 23 2 43 43 H 1.09003 * 117.50173 * 145.02305 * 24 23 2 44 44 H 1.08997 * 117.50274 * 214.97668 * 25 23 2 45 45 H 1.09008 * 117.49702 * 359.97212 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4765 6 8 1.0111 1.0869 2.3633 7 7 1.9854 -0.3916 3.7001 8 6 1.5984 0.3654 4.8933 9 6 2.1082 -0.3559 6.1424 10 1 3.1878 -0.4971 6.0909 11 6 1.7130 0.4221 7.4253 12 6 1.6794 -0.7128 8.4793 13 7 1.1327 -1.8786 7.7612 14 6 0.4920 -2.9426 8.3379 15 1 -0.1279 -3.5906 7.7359 16 6 0.6392 -3.1884 9.6961 17 7 -0.2687 -3.8910 10.3399 18 14 2.1258 -2.5220 10.6102 19 1 1.8634 -1.1211 11.0271 20 1 2.3830 -3.3560 11.8116 21 1 3.3126 -2.5590 9.7185 22 6 1.3888 -1.7092 6.3234 23 6 2.0399 -0.7213 -1.2493 24 6 3.0762 0.0039 -2.1101 25 6 1.6373 -0.1484 -2.6096 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6053 -1.7199 1.2951 30 1 3.1263 -0.7996 1.2054 31 1 2.4899 -1.2151 3.7907 32 1 2.0331 1.3638 4.8469 33 1 0.5121 0.4437 4.9373 34 1 2.4670 1.1676 7.6779 35 1 0.7313 0.8829 7.3159 36 1 1.0287 -0.4397 9.3100 37 1 2.6851 -0.9272 8.8407 38 1 -0.1656 -4.0630 11.2889 39 1 0.4455 -1.7035 5.7771 40 1 2.0228 -2.5178 5.9596 41 1 2.1252 -1.8047 -1.1648 42 1 3.3944 0.9949 -1.7867 43 1 3.8431 -0.6024 -2.5923 44 1 1.4581 -0.8547 -3.4202 45 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663645067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:01 Heat of formation + Delta-G solvation = -26.172987 kcal Electronic energy + Delta-G solvation = -21860.477384 eV Core-core repulsion = 18684.819801 eV Total energy + Delta-G solvation = -3175.657582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.98951 -39.61532 -38.63059 -36.06990 -34.42961 -34.04557 -32.21826 -30.31502 -28.86724 -27.26842 -25.24507 -24.11423 -23.07595 -22.77659 -21.37741 -21.07260 -20.56571 -18.92714 -17.92373 -17.30531 -17.20148 -16.87820 -16.20299 -16.12772 -15.60193 -15.44163 -15.09157 -14.66780 -14.37966 -14.09991 -13.96445 -13.90272 -13.67495 -13.26397 -13.01991 -12.97661 -12.64824 -12.41250 -12.25347 -12.20374 -12.05778 -11.97593 -11.81994 -11.70787 -11.59070 -11.37112 -11.15796 -10.81844 -10.76892 -10.62371 -10.00319 -9.05554 -8.19094 -5.45694 1.30794 1.38590 1.48137 1.73187 2.27363 2.41210 2.96119 3.02677 3.30843 3.65010 3.76816 3.81304 3.85870 3.89141 4.06011 4.12688 4.26926 4.38614 4.39871 4.42446 4.54163 4.57487 4.67794 4.76856 4.79140 4.82819 4.83745 4.84741 4.95396 5.01303 5.06140 5.07360 5.09479 5.19250 5.27759 5.31930 5.36922 5.44189 5.49898 5.59179 5.67553 6.09046 6.63077 6.76215 7.33936 7.53524 8.10157 9.00963 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.002893 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.405381 B = 9675.796620 C = 9903.988361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 H 0.060 0.940 4 C -0.129 4.129 5 C 0.507 3.493 6 O -0.581 6.581 7 N -0.722 5.722 8 C 0.142 3.858 9 C -0.096 4.096 10 H 0.105 0.895 11 C -0.111 4.111 12 C 0.099 3.901 13 N -0.630 5.630 14 C -0.237 4.237 15 H 0.056 0.944 16 C -0.040 4.040 17 N -0.959 5.959 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.309 1.309 21 H -0.265 1.265 22 C 0.136 3.864 23 C -0.150 4.150 24 C -0.179 4.179 25 C -0.183 4.183 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.414 0.586 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.024 0.976 40 H 0.037 0.963 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 9.112 -22.932 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 H 0.078 0.922 4 C -0.169 4.169 5 C 0.296 3.704 6 O -0.462 6.462 7 N -0.374 5.374 8 C 0.018 3.982 9 C -0.115 4.115 10 H 0.123 0.877 11 C -0.150 4.150 12 C -0.025 4.025 13 N -0.357 5.357 14 C -0.366 4.366 15 H 0.073 0.927 16 C -0.235 4.235 17 N -0.605 5.605 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.238 1.238 21 H -0.190 1.190 22 C 0.011 3.989 23 C -0.168 4.168 24 C -0.216 4.216 25 C -0.220 4.220 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.250 0.750 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.135 0.865 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.637 9.706 -22.849 26.630 hybrid contribution 0.255 -0.598 1.085 1.265 sum 9.892 9.108 -21.764 25.583 Atomic orbital electron populations 1.21884 0.95420 1.01616 1.01676 1.20374 0.95538 0.98305 0.91725 0.92154 1.21760 1.04513 1.00265 0.90331 1.21273 0.78250 0.85377 0.85516 1.90655 1.41575 1.26692 1.87237 1.46045 1.57669 1.28262 1.05445 1.21162 0.99230 0.95137 0.82680 1.22342 1.01128 0.94101 0.93904 0.87651 1.22693 1.02925 0.96324 0.93049 1.22111 0.96278 0.87930 0.96182 1.44910 1.67845 1.19393 1.03599 1.18579 1.20278 1.05025 0.92698 0.92657 1.25690 1.00858 0.99631 0.97296 1.69985 1.34956 1.46187 1.09411 0.85875 0.81602 0.77469 0.77110 1.19502 1.23779 1.19016 1.21564 0.97086 0.96049 0.84174 1.22327 1.03957 0.99611 0.90870 1.23099 0.92610 1.02043 1.03874 1.22997 0.98260 1.03416 0.97352 0.92534 0.93341 0.92674 0.87085 0.86386 0.75016 0.90521 0.93186 0.87620 0.90812 0.94502 0.95362 0.92871 0.95764 0.94481 0.86538 0.89212 0.87732 0.87942 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.77 71.98 0.63 -2.32 16 2 C -0.04 -0.68 2.19 -10.79 -0.02 -0.71 16 3 H 0.06 1.23 7.71 -2.39 -0.02 1.21 16 4 C -0.13 -1.92 5.16 29.85 0.15 -1.76 16 5 C 0.51 11.38 7.55 87.65 0.66 12.04 16 6 O -0.58 -17.76 13.96 -3.02 -0.04 -17.80 16 7 N -0.72 -14.76 5.40 -463.06 -2.50 -17.26 16 8 C 0.14 3.39 4.99 86.38 0.43 3.83 16 9 C -0.10 -2.50 3.02 -9.61 -0.03 -2.53 16 10 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 11 C -0.11 -3.21 6.53 31.99 0.21 -3.00 16 12 C 0.10 4.05 4.70 86.86 0.41 4.45 16 13 N -0.63 -29.83 3.21 -691.97 -2.22 -32.04 16 14 C -0.24 -13.77 10.57 84.03 0.89 -12.88 16 15 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 16 C -0.04 -2.41 5.43 84.86 0.46 -1.95 16 17 N -0.96 -61.23 13.97 21.65 0.30 -60.92 16 18 Si 0.95 46.76 24.27 68.60 1.66 48.43 16 19 H -0.27 -12.42 6.49 99.48 0.65 -11.77 16 20 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 21 H -0.27 -12.35 6.66 99.48 0.66 -11.69 16 22 C 0.14 4.89 6.52 86.73 0.57 5.46 16 23 C -0.15 -1.93 5.15 -10.79 -0.06 -1.98 16 24 C -0.18 -2.13 10.18 30.62 0.31 -1.81 16 25 C -0.18 -2.31 9.74 30.62 0.30 -2.01 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.24 5.95 -2.38 -0.01 1.23 16 28 H 0.05 1.02 7.29 -2.39 -0.02 1.00 16 29 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.41 6.52 8.33 -92.71 -0.77 5.75 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.42 8.06 -2.39 -0.02 1.40 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 36 H 0.04 1.65 6.64 -2.39 -0.02 1.64 16 37 H 0.03 1.16 5.57 -2.39 -0.01 1.15 16 38 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.02 0.92 7.76 -2.38 -0.02 0.90 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.12 1.25 8.11 -2.39 -0.02 1.23 16 42 H 0.09 1.13 8.05 -2.39 -0.02 1.11 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.21 7.61 -2.38 -0.02 1.19 16 Total: -1.00 -73.53 350.34 2.20 -71.33 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.08 Total: 13.45 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.91 Total: -5.18 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -4.42 Total: -110.22 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.04 Total: -17.80 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.66 Total: 48.43 kcal Total: -73.53 2.20 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.156 kcal (2) G-P(sol) polarization free energy of solvation -73.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds