Wall clock time and date at job start Tue Mar 31 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47309 * 2 1 4 4 C 1.53001 * 109.47193 * 120.00054 * 2 1 3 5 5 C 1.50707 * 109.46854 * 295.00046 * 4 2 1 6 6 O 1.21282 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00100 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00332 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47283 * 179.97438 * 8 7 5 10 10 H 1.08993 * 110.88641 * 308.88125 * 9 8 7 11 11 C 1.55156 * 111.00545 * 184.99999 * 9 8 7 12 12 C 1.54322 * 102.94542 * 206.42890 * 11 9 8 13 13 N 1.47016 * 107.40169 * 22.11215 * 12 11 9 14 14 C 1.36935 * 125.64824 * 181.10494 * 13 12 11 15 15 H 1.08009 * 119.99965 * 173.88672 * 14 13 12 16 16 C 1.38807 * 120.00079 * 353.88343 * 14 13 12 17 17 N 1.31617 * 119.99906 * 6.82734 * 16 14 13 18 18 Si 1.86807 * 120.00016 * 186.82351 * 16 14 13 19 19 H 1.48501 * 109.46673 * 94.98788 * 18 16 14 20 20 H 1.48498 * 109.46962 * 214.98492 * 18 16 14 21 21 H 1.48490 * 109.47113 * 334.98916 * 18 16 14 22 22 C 1.47747 * 108.53089 * 1.18323 * 13 12 11 23 23 C 1.52999 * 109.47091 * 239.99698 * 2 1 3 24 24 C 1.53000 * 117.49913 * 128.62527 * 23 2 1 25 25 C 1.52999 * 117.49807 * 60.00273 * 23 2 1 26 26 H 1.09000 * 109.46786 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46888 * 300.00321 * 1 2 3 28 28 H 1.09001 * 109.46550 * 59.99905 * 1 2 3 29 29 H 1.09000 * 109.47209 * 175.00340 * 4 2 1 30 30 H 1.08996 * 109.47493 * 54.99420 * 4 2 1 31 31 H 0.97004 * 119.99734 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.46942 * 59.99196 * 8 7 5 33 33 H 1.09004 * 109.46956 * 299.99895 * 8 7 5 34 34 H 1.09000 * 110.72008 * 88.05728 * 11 9 8 35 35 H 1.09011 * 110.87056 * 324.85930 * 11 9 8 36 36 H 1.08998 * 109.88471 * 141.61061 * 12 11 9 37 37 H 1.08999 * 109.88004 * 262.62071 * 12 11 9 38 38 H 0.97003 * 119.99609 * 179.97438 * 17 16 14 39 39 H 1.09000 * 110.29824 * 216.94324 * 22 13 12 40 40 H 1.09003 * 110.52443 * 94.67246 * 22 13 12 41 41 H 1.09005 * 115.55305 * 274.32778 * 23 2 1 42 42 H 1.09003 * 117.49700 * 359.97438 * 24 23 2 43 43 H 1.09000 * 117.50246 * 145.01985 * 24 23 2 44 44 H 1.09005 * 117.50003 * 214.97887 * 25 23 2 45 45 H 1.09001 * 117.49882 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0117 1.0875 2.3632 7 7 1.9853 -0.3913 3.7002 8 6 1.5982 0.3656 4.8932 9 6 2.1081 -0.3557 6.1425 10 1 1.8146 -1.4053 6.1322 11 6 1.6111 0.3482 7.4328 12 6 2.6935 -0.0235 8.4681 13 7 3.9120 -0.3737 7.7238 14 6 5.0959 -0.7820 8.2777 15 1 5.9044 -1.1116 7.6419 16 6 5.2570 -0.7723 9.6564 17 7 4.2326 -0.5005 10.4367 18 14 6.9278 -1.1452 10.4042 19 1 7.6476 0.1269 10.6664 20 1 6.7455 -1.8828 11.6801 21 1 7.7182 -1.9758 9.4607 22 6 3.6441 -0.2091 6.2802 23 6 2.0400 -0.7213 -1.2492 24 6 3.0742 0.0050 -2.1116 25 6 1.6358 -0.1496 -2.6096 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 3.1264 -0.7994 1.2056 30 1 1.6054 -1.7198 1.2953 31 1 2.4892 -1.2152 3.7908 32 1 0.5119 0.4440 4.9372 33 1 2.0329 1.3641 4.8469 34 1 0.6388 -0.0414 7.7345 35 1 1.5658 1.4283 7.2932 36 1 2.8896 0.8270 9.1211 37 1 2.3627 -0.8767 9.0602 38 1 4.3451 -0.4941 11.4002 39 1 4.1520 -0.9871 5.7102 40 1 3.9629 0.7770 5.9423 41 1 2.1268 -1.8046 -1.1642 42 1 3.3909 0.9970 -1.7893 43 1 3.8416 -0.6003 -2.5941 44 1 1.4568 -0.8567 -3.4196 45 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663645068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:09 Heat of formation + Delta-G solvation = -8.172384 kcal Electronic energy + Delta-G solvation = -21741.173433 eV Core-core repulsion = 18566.296415 eV Total energy + Delta-G solvation = -3174.877018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -39.96166 -38.19467 -37.50207 -34.66551 -33.30076 -32.49622 -29.95338 -28.67713 -27.53901 -25.46164 -24.11984 -23.06346 -22.51800 -20.65020 -20.02263 -19.97114 -19.52118 -17.11419 -16.66154 -16.35588 -15.58410 -15.49068 -15.03848 -14.61628 -14.46295 -13.84111 -13.68310 -13.36252 -13.20761 -12.99958 -12.34789 -12.25538 -11.98513 -11.84930 -11.75745 -11.50998 -11.39479 -11.29467 -10.95235 -10.91345 -10.80392 -10.54242 -10.36929 -10.15958 -10.12322 -10.00571 -9.89810 -9.66434 -9.55480 -8.91201 -8.59017 -6.83611 -5.73510 -3.05974 2.70671 3.25261 3.39244 3.44363 3.46392 3.55425 4.38352 4.48371 4.54197 4.67091 4.75016 4.96110 5.06199 5.14886 5.23174 5.23802 5.35741 5.39007 5.41262 5.48275 5.54726 5.64255 5.65966 5.69571 5.74814 5.86384 5.90035 5.98019 6.05995 6.07057 6.20784 6.28274 6.34822 6.48156 6.50990 6.53731 6.69758 6.91102 7.54457 7.59235 7.63383 7.81726 8.24919 8.30394 9.20726 9.81194 10.48421 11.38691 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.002827 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.508160 B = 9903.196577 C =10648.879455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.136 4.136 5 C 0.510 3.490 6 O -0.544 6.544 7 N -0.727 5.727 8 C 0.132 3.868 9 C -0.117 4.117 10 H 0.079 0.921 11 C -0.135 4.135 12 C 0.176 3.824 13 N -0.607 5.607 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.142 3.858 23 C -0.149 4.149 24 C -0.182 4.182 25 C -0.179 4.179 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.252 0.748 39 H 0.035 0.965 40 H 0.020 0.980 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -1.591 -21.230 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.297 3.703 6 O -0.422 6.422 7 N -0.378 5.378 8 C 0.008 3.992 9 C -0.137 4.137 10 H 0.097 0.903 11 C -0.174 4.174 12 C 0.051 3.949 13 N -0.333 5.333 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.016 3.984 23 C -0.167 4.167 24 C -0.219 4.219 25 C -0.216 4.216 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.903 -0.878 -21.066 22.186 hybrid contribution 1.199 -0.671 0.565 1.485 sum -5.704 -1.550 -20.502 21.337 Atomic orbital electron populations 1.21925 0.94442 1.01440 1.02915 1.20447 0.96376 0.98954 0.90487 0.90371 1.21725 1.03080 1.00162 0.92615 1.20661 0.79224 0.85758 0.84694 1.90657 1.40133 1.24686 1.86703 1.46140 1.57610 1.27959 1.06058 1.21381 0.99527 0.95342 0.82900 1.22604 0.98115 0.99609 0.93366 0.90289 1.22850 0.99695 0.99347 0.95478 1.21150 0.83401 0.99424 0.90901 1.44549 1.10350 1.79047 0.99382 1.19051 0.89827 1.36699 0.90195 0.90485 1.24832 0.97665 1.01890 0.96035 1.69982 1.28254 1.55284 1.03197 0.86120 0.83451 0.77673 0.78665 1.21607 1.21769 1.20641 1.21629 0.91487 0.97672 0.87634 1.22369 1.03604 0.99115 0.91611 1.23039 0.92461 1.02166 1.04224 1.22921 0.98155 1.03366 0.97170 0.93351 0.90560 0.93005 0.88774 0.88954 0.76459 0.91791 0.91437 0.92029 0.92191 0.93641 0.93941 0.93743 0.94694 0.96250 0.87826 0.88746 0.88967 0.89011 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.77 37.16 0.33 -1.16 16 2 C -0.04 -0.41 2.19 -90.62 -0.20 -0.61 16 3 H 0.08 0.86 7.71 -51.93 -0.40 0.46 16 4 C -0.14 -1.22 5.16 -27.88 -0.14 -1.37 16 5 C 0.51 6.41 7.55 -10.98 -0.08 6.32 16 6 O -0.54 -8.71 13.97 5.56 0.08 -8.63 16 7 N -0.73 -8.87 5.50 -60.29 -0.33 -9.20 16 8 C 0.13 1.89 5.13 -4.05 -0.02 1.87 16 9 C -0.12 -1.92 3.05 -88.47 -0.27 -2.19 16 10 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 11 C -0.13 -2.45 6.42 -24.90 -0.16 -2.61 16 12 C 0.18 4.25 5.37 -3.07 -0.02 4.23 16 13 N -0.61 -15.40 3.40 -169.82 -0.58 -15.98 16 14 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 15 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 16 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 17 N -0.92 -27.08 10.36 55.49 0.57 -26.50 16 18 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.14 2.83 6.67 -2.35 -0.02 2.81 16 23 C -0.15 -1.16 5.15 -90.62 -0.47 -1.63 16 24 C -0.18 -1.36 10.18 -26.73 -0.27 -1.63 16 25 C -0.18 -1.31 9.73 -26.73 -0.26 -1.57 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.94 5.95 -51.93 -0.31 0.63 16 28 H 0.05 0.47 7.29 -51.93 -0.38 0.09 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.04 8.04 -51.92 -0.42 0.62 16 36 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16 37 H 0.04 1.13 7.54 -51.93 -0.39 0.74 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 41 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.70 7.61 -51.93 -0.39 0.31 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -31.72 356.67 -9.77 -41.49 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.03 Total: 0.80 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.83 Total: -4.38 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.34 Total: -51.68 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.72 -9.77 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.322 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds