Wall clock time and date at job start Tue Mar 31 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47309 * 2 1 4 4 C 1.53001 * 109.47193 * 120.00054 * 2 1 3 5 5 C 1.50707 * 109.46854 * 295.00046 * 4 2 1 6 6 O 1.21282 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00100 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00332 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47283 * 179.97438 * 8 7 5 10 10 H 1.08993 * 110.88641 * 308.88125 * 9 8 7 11 11 C 1.55156 * 111.00545 * 184.99999 * 9 8 7 12 12 C 1.54322 * 102.94542 * 206.42890 * 11 9 8 13 13 N 1.47016 * 107.40169 * 22.11215 * 12 11 9 14 14 C 1.36935 * 125.64824 * 181.10494 * 13 12 11 15 15 H 1.08009 * 119.99965 * 173.88672 * 14 13 12 16 16 C 1.38807 * 120.00079 * 353.88343 * 14 13 12 17 17 N 1.31617 * 119.99906 * 6.82734 * 16 14 13 18 18 Si 1.86807 * 120.00016 * 186.82351 * 16 14 13 19 19 H 1.48501 * 109.46673 * 94.98788 * 18 16 14 20 20 H 1.48498 * 109.46962 * 214.98492 * 18 16 14 21 21 H 1.48490 * 109.47113 * 334.98916 * 18 16 14 22 22 C 1.47747 * 108.53089 * 1.18323 * 13 12 11 23 23 C 1.52999 * 109.47091 * 239.99698 * 2 1 3 24 24 C 1.53000 * 117.49913 * 128.62527 * 23 2 1 25 25 C 1.52999 * 117.49807 * 60.00273 * 23 2 1 26 26 H 1.09000 * 109.46786 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46888 * 300.00321 * 1 2 3 28 28 H 1.09001 * 109.46550 * 59.99905 * 1 2 3 29 29 H 1.09000 * 109.47209 * 175.00340 * 4 2 1 30 30 H 1.08996 * 109.47493 * 54.99420 * 4 2 1 31 31 H 0.97004 * 119.99734 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.46942 * 59.99196 * 8 7 5 33 33 H 1.09004 * 109.46956 * 299.99895 * 8 7 5 34 34 H 1.09000 * 110.72008 * 88.05728 * 11 9 8 35 35 H 1.09011 * 110.87056 * 324.85930 * 11 9 8 36 36 H 1.08998 * 109.88471 * 141.61061 * 12 11 9 37 37 H 1.08999 * 109.88004 * 262.62071 * 12 11 9 38 38 H 0.97003 * 119.99609 * 179.97438 * 17 16 14 39 39 H 1.09000 * 110.29824 * 216.94324 * 22 13 12 40 40 H 1.09003 * 110.52443 * 94.67246 * 22 13 12 41 41 H 1.09005 * 115.55305 * 274.32778 * 23 2 1 42 42 H 1.09003 * 117.49700 * 359.97438 * 24 23 2 43 43 H 1.09000 * 117.50246 * 145.01985 * 24 23 2 44 44 H 1.09005 * 117.50003 * 214.97887 * 25 23 2 45 45 H 1.09001 * 117.49882 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0117 1.0875 2.3632 7 7 1.9853 -0.3913 3.7002 8 6 1.5982 0.3656 4.8932 9 6 2.1081 -0.3557 6.1425 10 1 1.8146 -1.4053 6.1322 11 6 1.6111 0.3482 7.4328 12 6 2.6935 -0.0235 8.4681 13 7 3.9120 -0.3737 7.7238 14 6 5.0959 -0.7820 8.2777 15 1 5.9044 -1.1116 7.6419 16 6 5.2570 -0.7723 9.6564 17 7 4.2326 -0.5005 10.4367 18 14 6.9278 -1.1452 10.4042 19 1 7.6476 0.1269 10.6664 20 1 6.7455 -1.8828 11.6801 21 1 7.7182 -1.9758 9.4607 22 6 3.6441 -0.2091 6.2802 23 6 2.0400 -0.7213 -1.2492 24 6 3.0742 0.0050 -2.1116 25 6 1.6358 -0.1496 -2.6096 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 3.1264 -0.7994 1.2056 30 1 1.6054 -1.7198 1.2953 31 1 2.4892 -1.2152 3.7908 32 1 0.5119 0.4440 4.9372 33 1 2.0329 1.3641 4.8469 34 1 0.6388 -0.0414 7.7345 35 1 1.5658 1.4283 7.2932 36 1 2.8896 0.8270 9.1211 37 1 2.3627 -0.8767 9.0602 38 1 4.3451 -0.4941 11.4002 39 1 4.1520 -0.9871 5.7102 40 1 3.9629 0.7770 5.9423 41 1 2.1268 -1.8046 -1.1642 42 1 3.3909 0.9970 -1.7893 43 1 3.8416 -0.6003 -2.5941 44 1 1.4568 -0.8567 -3.4196 45 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663645068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:06 Heat of formation + Delta-G solvation = -27.164928 kcal Electronic energy + Delta-G solvation = -21741.997011 eV Core-core repulsion = 18566.296415 eV Total energy + Delta-G solvation = -3175.700596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95302 -39.38298 -38.59603 -36.01204 -34.30801 -34.02323 -31.67739 -30.14296 -28.65066 -27.13161 -25.39288 -24.16368 -23.07217 -22.08612 -21.51181 -20.99545 -20.53757 -18.86457 -17.86712 -17.39802 -16.72972 -16.50543 -16.42237 -15.96683 -15.68117 -15.26005 -14.92957 -14.35396 -14.27012 -13.96216 -13.92024 -13.77893 -13.47017 -13.10261 -12.93657 -12.76189 -12.64178 -12.40506 -12.19831 -12.00848 -12.00170 -11.87715 -11.84467 -11.65575 -11.54699 -11.45046 -11.15351 -10.76116 -10.70022 -10.60950 -9.98747 -8.89339 -7.86468 -5.20852 1.45627 1.47945 1.56552 1.74437 2.28785 2.49292 2.96731 3.32316 3.62067 3.68257 3.80131 3.84226 4.03196 4.04890 4.07503 4.14114 4.29402 4.41630 4.46700 4.55771 4.62022 4.68078 4.73948 4.78939 4.83346 4.84651 4.93051 4.96375 5.04561 5.07999 5.08818 5.10238 5.29232 5.32060 5.37335 5.45686 5.47103 5.51403 5.60826 5.67995 5.77296 6.19891 6.64904 7.09934 7.35152 7.77596 8.43207 9.24721 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.002827 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.508160 B = 9903.196577 C =10648.879455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 H 0.055 0.945 4 C -0.128 4.128 5 C 0.507 3.493 6 O -0.582 6.582 7 N -0.721 5.721 8 C 0.145 3.855 9 C -0.094 4.094 10 H 0.091 0.909 11 C -0.123 4.123 12 C 0.182 3.818 13 N -0.630 5.630 14 C -0.242 4.242 15 H 0.084 0.916 16 C -0.068 4.068 17 N -0.951 5.951 18 Si 0.977 3.023 19 H -0.290 1.290 20 H -0.295 1.295 21 H -0.265 1.265 22 C 0.138 3.862 23 C -0.148 4.148 24 C -0.185 4.185 25 C -0.180 4.180 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.413 0.587 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.005 0.995 37 H 0.009 0.991 38 H 0.246 0.754 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 -3.027 -23.370 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 H 0.073 0.927 4 C -0.168 4.168 5 C 0.296 3.704 6 O -0.462 6.462 7 N -0.373 5.373 8 C 0.020 3.980 9 C -0.113 4.113 10 H 0.109 0.891 11 C -0.162 4.162 12 C 0.057 3.943 13 N -0.356 5.356 14 C -0.371 4.371 15 H 0.102 0.898 16 C -0.261 4.261 17 N -0.600 5.600 18 Si 0.806 3.194 19 H -0.217 1.217 20 H -0.222 1.222 21 H -0.189 1.189 22 C 0.013 3.987 23 C -0.166 4.166 24 C -0.222 4.222 25 C -0.217 4.217 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.250 0.750 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.023 0.977 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.557 -2.334 -23.252 24.271 hybrid contribution 1.087 -0.188 1.190 1.622 sum -5.470 -2.522 -22.062 22.869 Atomic orbital electron populations 1.21866 0.94955 1.01846 1.01703 1.20387 0.95932 0.98106 0.91710 0.92663 1.21759 1.04262 1.00515 0.90253 1.21297 0.78268 0.85400 0.85465 1.90654 1.41849 1.26522 1.87213 1.46051 1.57605 1.28181 1.05434 1.21090 0.99646 0.94542 0.82702 1.22404 0.95202 1.00335 0.93402 0.89067 1.22717 0.98642 1.00306 0.94551 1.20920 0.84985 0.96467 0.91967 1.44887 1.10078 1.78781 1.01898 1.19476 0.90998 1.35934 0.90662 0.89790 1.25698 1.01124 1.02625 0.96686 1.70205 1.30141 1.56778 1.02901 0.85071 0.79337 0.77367 0.77661 1.21689 1.22177 1.18896 1.21814 0.94211 0.97845 0.84823 1.22336 1.03736 0.99681 0.90824 1.23087 0.92851 1.01988 1.04237 1.22985 0.97954 1.03418 0.97366 0.92051 0.93210 0.92774 0.87005 0.86404 0.75047 0.91131 0.92768 0.89645 0.91276 0.97652 0.97261 0.94440 0.93181 0.96525 0.86258 0.89571 0.87795 0.87745 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.77 71.98 0.63 -2.09 16 2 C -0.04 -0.72 2.19 -10.79 -0.02 -0.75 16 3 H 0.05 1.20 7.71 -2.39 -0.02 1.18 16 4 C -0.13 -1.95 5.16 29.85 0.15 -1.80 16 5 C 0.51 11.78 7.55 87.66 0.66 12.44 16 6 O -0.58 -18.24 13.97 -3.04 -0.04 -18.28 16 7 N -0.72 -15.77 5.50 -463.05 -2.55 -18.32 16 8 C 0.14 3.82 5.13 86.38 0.44 4.27 16 9 C -0.09 -2.88 3.05 -9.40 -0.03 -2.91 16 10 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 11 C -0.12 -4.36 6.42 31.78 0.20 -4.16 16 12 C 0.18 8.98 5.37 86.73 0.47 9.45 16 13 N -0.63 -32.12 3.40 -691.18 -2.35 -34.47 16 14 C -0.24 -13.50 10.28 84.03 0.86 -12.64 16 15 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 16 C -0.07 -3.91 5.48 84.86 0.47 -3.45 16 17 N -0.95 -57.79 10.36 21.65 0.22 -57.56 16 18 Si 0.98 45.74 29.56 68.60 2.03 47.77 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 20 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.14 5.31 6.67 86.79 0.58 5.89 16 23 C -0.15 -1.93 5.15 -10.79 -0.06 -1.98 16 24 C -0.18 -2.40 10.18 30.59 0.31 -2.09 16 25 C -0.18 -2.29 9.73 30.59 0.30 -1.99 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.20 5.95 -2.38 -0.01 1.19 16 28 H 0.05 0.94 7.29 -2.39 -0.02 0.93 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.41 7.13 8.47 -92.71 -0.79 6.35 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 33 H 0.05 1.61 7.96 -2.38 -0.02 1.59 16 34 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.07 2.33 8.04 -2.38 -0.02 2.31 16 36 H 0.01 0.30 7.36 -2.39 -0.02 0.28 16 37 H 0.01 0.50 7.54 -2.39 -0.02 0.49 16 38 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.02 0.67 7.90 -2.39 -0.02 0.65 16 41 H 0.12 1.22 8.11 -2.38 -0.02 1.20 16 42 H 0.09 1.25 8.05 -2.39 -0.02 1.23 16 43 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.09 1.22 7.61 -2.39 -0.02 1.20 16 Total: -1.00 -70.68 356.67 2.45 -68.24 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.17 Total: 14.43 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 4.97 Total: -1.81 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.68 Total: -110.35 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.04 Total: -18.28 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.68 2.45 -68.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.072 kcal (2) G-P(sol) polarization free energy of solvation -70.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds