Wall clock time and date at job start Tue Mar 31 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47672 * 2 1 4 4 C 1.52997 * 109.47281 * 239.99647 * 2 1 3 5 5 C 1.50699 * 109.47144 * 65.00149 * 4 2 1 6 6 O 1.21283 * 119.99886 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00535 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47358 * 179.97438 * 8 7 5 10 10 H 1.09008 * 110.88445 * 57.42402 * 9 8 7 11 11 C 1.55154 * 111.00682 * 181.34650 * 9 8 7 12 12 C 1.54325 * 102.94303 * 153.57509 * 11 9 8 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 11 15 15 H 1.08005 * 119.99558 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00146 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47204 * 119.99715 * 18 16 14 21 21 H 1.48508 * 109.46889 * 239.99519 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 23 23 C 1.52999 * 109.47015 * 119.99895 * 2 1 3 24 24 C 1.53000 * 117.49882 * 248.62128 * 23 2 1 25 25 C 1.53001 * 60.00232 * 252.51091 * 24 23 2 26 26 H 1.09000 * 109.46533 * 60.00291 * 1 2 3 27 27 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46746 * 300.00532 * 1 2 3 29 29 H 1.09003 * 109.47483 * 305.00134 * 4 2 1 30 30 H 1.08995 * 109.47455 * 185.00238 * 4 2 1 31 31 H 0.97004 * 119.99840 * 359.97438 * 7 5 4 32 32 H 1.08994 * 109.47369 * 59.99227 * 8 7 5 33 33 H 1.09004 * 109.47192 * 299.99245 * 8 7 5 34 34 H 1.09002 * 110.72290 * 271.94195 * 11 9 8 35 35 H 1.08994 * 110.71922 * 35.03664 * 11 9 8 36 36 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 37 37 H 1.08999 * 109.88411 * 218.39137 * 12 11 9 38 38 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 40 40 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 41 41 H 1.08999 * 115.55046 * 34.32747 * 23 2 1 42 42 H 1.08999 * 117.49759 * 359.97438 * 24 23 2 43 43 H 1.09004 * 117.50087 * 145.02019 * 24 23 2 44 44 H 1.08997 * 117.49522 * 252.51585 * 25 24 23 45 45 H 1.08992 * 117.51767 * 107.47902 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6415 0.0569 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9846 -0.3920 -3.7002 8 6 1.5975 0.3648 -4.8932 9 6 2.1074 -0.3565 -6.1425 10 1 1.7217 -1.3750 -6.1877 11 6 1.7455 0.4337 -7.4277 12 6 2.8445 0.0007 -8.4208 13 7 3.9865 -0.4837 -7.6266 14 6 5.1596 -0.9790 -8.1303 15 1 5.9384 -1.3099 -7.4591 16 6 5.3478 -1.0557 -9.5035 17 7 4.3986 -0.6529 -10.3214 18 14 6.9478 -1.7320 -10.1905 19 1 7.8452 -2.1140 -9.0706 20 1 6.6623 -2.9261 -11.0259 21 1 7.6082 -0.6931 -11.0211 22 6 3.6555 -0.3461 -6.1966 23 6 2.0400 -0.7212 1.2493 24 6 2.7419 0.1227 2.3151 25 6 3.5551 -0.8281 1.4343 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6055 -1.7199 -1.2951 30 1 3.1263 -0.7996 -1.2055 31 1 2.4885 -1.2159 -3.7908 32 1 2.0328 1.3630 -4.8474 33 1 0.5112 0.4438 -4.9369 34 1 0.7599 0.1452 -7.7932 35 1 1.7883 1.5074 -7.2451 36 1 2.4720 -0.7998 -9.0600 37 1 3.1506 0.8517 -9.0292 38 1 4.5299 -0.7068 -11.2809 39 1 4.0424 0.5953 -5.8065 40 1 4.0605 -1.1853 -5.6311 41 1 1.4310 -1.5584 1.5903 42 1 2.8407 1.1916 2.1261 43 1 2.5947 -0.1592 3.3578 44 1 3.9427 -1.7354 1.8975 45 1 4.1884 -0.3849 0.6659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663645069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:14 Heat of formation + Delta-G solvation = -8.454548 kcal Electronic energy + Delta-G solvation = -21841.208515 eV Core-core repulsion = 18666.319262 eV Total energy + Delta-G solvation = -3174.889253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.97672 -38.18796 -37.48963 -34.65792 -33.27043 -32.49472 -29.98067 -28.73223 -27.54816 -25.43871 -23.94428 -23.10734 -22.56382 -20.75192 -20.03493 -19.93568 -19.45237 -17.15709 -16.66255 -16.27268 -15.63742 -15.42028 -15.02938 -14.63877 -14.59797 -13.78357 -13.68574 -13.43424 -13.13265 -12.94444 -12.34916 -12.20430 -11.97834 -11.82653 -11.75306 -11.50457 -11.40395 -11.33143 -10.99944 -10.90667 -10.82042 -10.45650 -10.37729 -10.20347 -10.13494 -9.98606 -9.88044 -9.67226 -9.54619 -8.90748 -8.62035 -6.84394 -5.72690 -3.06134 2.71457 3.23848 3.38545 3.43865 3.46497 3.57648 4.38299 4.48132 4.59000 4.66636 4.77932 4.94949 5.02699 5.12797 5.24423 5.29033 5.33076 5.41410 5.42851 5.48809 5.53791 5.62437 5.65002 5.68656 5.86563 5.87427 5.90032 5.93539 6.05938 6.07213 6.19205 6.29046 6.33792 6.47808 6.52365 6.53165 6.69263 6.90710 7.54718 7.60226 7.61929 7.81330 8.24355 8.31197 9.20421 9.81105 10.47585 11.39398 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.003012 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.152696 B = 9292.627368 C =10189.278625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.510 3.490 6 O -0.544 6.544 7 N -0.726 5.726 8 C 0.133 3.867 9 C -0.118 4.118 10 H 0.079 0.921 11 C -0.135 4.135 12 C 0.177 3.823 13 N -0.607 5.607 14 C -0.228 4.228 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.143 3.857 23 C -0.149 4.149 24 C -0.180 4.180 25 C -0.183 4.183 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.252 0.748 39 H 0.018 0.982 40 H 0.035 0.965 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 -1.237 20.640 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.422 6.422 7 N -0.377 5.377 8 C 0.009 3.991 9 C -0.138 4.138 10 H 0.097 0.903 11 C -0.174 4.174 12 C 0.052 3.948 13 N -0.333 5.333 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.016 3.984 23 C -0.167 4.167 24 C -0.216 4.216 25 C -0.220 4.220 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.850 -0.531 20.485 21.606 hybrid contribution 1.160 -0.823 -0.534 1.519 sum -5.689 -1.353 19.951 20.791 Atomic orbital electron populations 1.21918 0.94335 1.01392 1.03051 1.20446 0.96495 0.98839 0.90469 0.90369 1.21744 1.03056 1.00286 0.92577 1.20687 0.79222 0.85750 0.84716 1.90654 1.40126 1.24742 1.86721 1.46134 1.57620 1.27960 1.06032 1.21369 0.99487 0.95304 0.82953 1.22614 0.98168 0.99520 0.93459 0.90278 1.22852 1.00057 0.98918 0.95547 1.21191 0.84559 0.98251 0.90787 1.44553 1.15372 1.74257 0.99143 1.19098 0.91700 1.34349 0.90474 0.90428 1.24812 0.98232 1.01579 0.95931 1.69973 1.32183 1.52670 1.02121 0.86046 0.82658 0.78211 0.78852 1.20513 1.21755 1.21750 1.21551 0.91110 0.97733 0.87984 1.22411 0.94700 1.01890 0.97682 1.23004 1.04726 0.97747 0.96173 1.22971 0.93958 1.01758 1.03285 0.90460 0.93367 0.92951 0.88919 0.88866 0.76423 0.91507 0.91814 0.92002 0.92221 0.93538 0.93894 0.93793 0.96386 0.94713 0.87832 0.88771 0.89016 0.88875 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.92 37.16 0.33 -1.15 16 2 C -0.04 -0.41 2.19 -90.62 -0.20 -0.61 16 3 H 0.08 0.87 7.71 -51.93 -0.40 0.47 16 4 C -0.14 -1.26 5.09 -27.88 -0.14 -1.40 16 5 C 0.51 6.46 7.55 -10.99 -0.08 6.38 16 6 O -0.54 -8.74 13.96 5.56 0.08 -8.67 16 7 N -0.73 -8.99 5.41 -60.30 -0.33 -9.32 16 8 C 0.13 1.90 5.12 -4.05 -0.02 1.88 16 9 C -0.12 -1.94 3.10 -88.47 -0.27 -2.21 16 10 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 11 C -0.13 -2.45 6.42 -24.90 -0.16 -2.61 16 12 C 0.18 4.26 5.38 -2.92 -0.02 4.25 16 13 N -0.61 -15.37 3.40 -169.85 -0.58 -15.95 16 14 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 15 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 17 N -0.92 -27.12 10.34 55.49 0.57 -26.55 16 18 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.14 2.83 6.40 -2.53 -0.02 2.82 16 23 C -0.15 -1.17 5.15 -90.62 -0.47 -1.63 16 24 C -0.18 -1.34 10.18 -26.73 -0.27 -1.62 16 25 C -0.18 -1.35 9.67 -26.73 -0.26 -1.61 16 26 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.76 7.12 -51.93 -0.37 0.39 16 31 H 0.40 4.25 8.34 -40.82 -0.34 3.91 16 32 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 36 H 0.05 1.24 7.39 -51.93 -0.38 0.85 16 37 H 0.04 1.15 7.52 -51.93 -0.39 0.76 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 42 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.72 7.58 -51.93 -0.39 0.33 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -31.63 356.25 -9.77 -41.39 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.03 Total: 1.08 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.83 Total: -4.36 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.33 Total: -51.81 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.63 -9.77 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.937 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds