Wall clock time and date at job start Tue Mar 31 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47672 * 2 1 4 4 C 1.52997 * 109.47281 * 239.99647 * 2 1 3 5 5 C 1.50699 * 109.47144 * 65.00149 * 4 2 1 6 6 O 1.21283 * 119.99886 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00535 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47358 * 179.97438 * 8 7 5 10 10 H 1.09008 * 110.88445 * 57.42402 * 9 8 7 11 11 C 1.55154 * 111.00682 * 181.34650 * 9 8 7 12 12 C 1.54325 * 102.94303 * 153.57509 * 11 9 8 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 11 15 15 H 1.08005 * 119.99558 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00146 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47204 * 119.99715 * 18 16 14 21 21 H 1.48508 * 109.46889 * 239.99519 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 23 23 C 1.52999 * 109.47015 * 119.99895 * 2 1 3 24 24 C 1.53000 * 117.49882 * 248.62128 * 23 2 1 25 25 C 1.53001 * 60.00232 * 252.51091 * 24 23 2 26 26 H 1.09000 * 109.46533 * 60.00291 * 1 2 3 27 27 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46746 * 300.00532 * 1 2 3 29 29 H 1.09003 * 109.47483 * 305.00134 * 4 2 1 30 30 H 1.08995 * 109.47455 * 185.00238 * 4 2 1 31 31 H 0.97004 * 119.99840 * 359.97438 * 7 5 4 32 32 H 1.08994 * 109.47369 * 59.99227 * 8 7 5 33 33 H 1.09004 * 109.47192 * 299.99245 * 8 7 5 34 34 H 1.09002 * 110.72290 * 271.94195 * 11 9 8 35 35 H 1.08994 * 110.71922 * 35.03664 * 11 9 8 36 36 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 37 37 H 1.08999 * 109.88411 * 218.39137 * 12 11 9 38 38 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 40 40 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 41 41 H 1.08999 * 115.55046 * 34.32747 * 23 2 1 42 42 H 1.08999 * 117.49759 * 359.97438 * 24 23 2 43 43 H 1.09004 * 117.50087 * 145.02019 * 24 23 2 44 44 H 1.08997 * 117.49522 * 252.51585 * 25 24 23 45 45 H 1.08992 * 117.51767 * 107.47902 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6415 0.0569 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9846 -0.3920 -3.7002 8 6 1.5975 0.3648 -4.8932 9 6 2.1074 -0.3565 -6.1425 10 1 1.7217 -1.3750 -6.1877 11 6 1.7455 0.4337 -7.4277 12 6 2.8445 0.0007 -8.4208 13 7 3.9865 -0.4837 -7.6266 14 6 5.1596 -0.9790 -8.1303 15 1 5.9384 -1.3099 -7.4591 16 6 5.3478 -1.0557 -9.5035 17 7 4.3986 -0.6529 -10.3214 18 14 6.9478 -1.7320 -10.1905 19 1 7.8452 -2.1140 -9.0706 20 1 6.6623 -2.9261 -11.0259 21 1 7.6082 -0.6931 -11.0211 22 6 3.6555 -0.3461 -6.1966 23 6 2.0400 -0.7212 1.2493 24 6 2.7419 0.1227 2.3151 25 6 3.5551 -0.8281 1.4343 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6055 -1.7199 -1.2951 30 1 3.1263 -0.7996 -1.2055 31 1 2.4885 -1.2159 -3.7908 32 1 2.0328 1.3630 -4.8474 33 1 0.5112 0.4438 -4.9369 34 1 0.7599 0.1452 -7.7932 35 1 1.7883 1.5074 -7.2451 36 1 2.4720 -0.7998 -9.0600 37 1 3.1506 0.8517 -9.0292 38 1 4.5299 -0.7068 -11.2809 39 1 4.0424 0.5953 -5.8065 40 1 4.0605 -1.1853 -5.6311 41 1 1.4310 -1.5584 1.5903 42 1 2.8407 1.1916 2.1261 43 1 2.5947 -0.1592 3.3578 44 1 3.9427 -1.7354 1.8975 45 1 4.1884 -0.3849 0.6659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663645069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:12 Heat of formation + Delta-G solvation = -27.277483 kcal Electronic energy + Delta-G solvation = -21842.024739 eV Core-core repulsion = 18666.319262 eV Total energy + Delta-G solvation = -3175.705477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.97635 -39.39865 -38.57404 -36.01177 -34.29391 -34.00876 -31.69882 -30.17784 -28.69966 -27.13577 -25.27256 -24.10982 -23.14234 -22.13433 -21.44790 -21.15234 -20.43284 -18.86826 -17.91092 -17.35361 -16.71250 -16.48368 -16.44930 -16.00323 -15.70283 -15.31060 -14.89950 -14.46133 -14.23535 -13.97089 -13.82437 -13.80828 -13.41774 -13.07556 -12.89198 -12.74940 -12.64428 -12.39062 -12.22036 -12.08133 -11.97718 -11.87255 -11.83784 -11.72654 -11.53246 -11.46002 -11.06931 -10.84369 -10.72275 -10.58850 -9.99151 -8.89894 -7.85296 -5.20717 1.46189 1.47190 1.57489 1.73678 2.27565 2.49596 2.96286 3.33519 3.61515 3.67647 3.83439 3.88165 4.01944 4.03614 4.06356 4.14610 4.25609 4.38069 4.45845 4.56714 4.61923 4.67262 4.72983 4.78676 4.82344 4.86213 4.92375 4.94253 5.05348 5.07625 5.08798 5.20371 5.24476 5.32272 5.38637 5.44788 5.45881 5.49387 5.60777 5.67153 5.77572 6.19839 6.64024 7.09957 7.34256 7.77763 8.42817 9.25852 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.003012 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.152696 B = 9292.627368 C =10189.278625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 H 0.056 0.944 4 C -0.129 4.129 5 C 0.507 3.493 6 O -0.581 6.581 7 N -0.721 5.721 8 C 0.145 3.855 9 C -0.095 4.095 10 H 0.090 0.910 11 C -0.124 4.124 12 C 0.183 3.817 13 N -0.630 5.630 14 C -0.240 4.240 15 H 0.085 0.915 16 C -0.070 4.070 17 N -0.954 5.954 18 Si 0.979 3.021 19 H -0.263 1.263 20 H -0.292 1.292 21 H -0.295 1.295 22 C 0.139 3.861 23 C -0.148 4.148 24 C -0.185 4.185 25 C -0.180 4.180 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.013 0.987 37 H 0.003 0.997 38 H 0.246 0.754 39 H 0.016 0.984 40 H 0.050 0.950 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 -2.665 22.782 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 H 0.074 0.926 4 C -0.169 4.169 5 C 0.296 3.704 6 O -0.462 6.462 7 N -0.373 5.373 8 C 0.021 3.979 9 C -0.115 4.115 10 H 0.108 0.892 11 C -0.162 4.162 12 C 0.057 3.943 13 N -0.356 5.356 14 C -0.369 4.369 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.603 5.603 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.219 1.219 21 H -0.222 1.222 22 C 0.014 3.986 23 C -0.166 4.166 24 C -0.222 4.222 25 C -0.217 4.217 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.249 0.751 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.637 -1.977 22.673 23.707 hybrid contribution 1.096 -0.335 -1.161 1.632 sum -5.541 -2.311 21.512 22.334 Atomic orbital electron populations 1.21864 0.94724 1.01932 1.01865 1.20385 0.96156 0.97977 0.91578 0.92599 1.21773 1.04095 1.00608 0.90404 1.21295 0.78289 0.85392 0.85447 1.90652 1.41788 1.26511 1.87211 1.46054 1.57614 1.28164 1.05463 1.21091 0.99662 0.94512 0.82683 1.22416 0.95454 1.00057 0.93535 0.89195 1.22718 0.98904 0.99761 0.94844 1.20960 0.86033 0.95554 0.91707 1.44890 1.15070 1.74017 1.01665 1.19522 0.92829 1.33600 0.90915 0.89726 1.25683 1.01559 1.02582 0.96445 1.70198 1.34077 1.54147 1.01867 0.85001 0.79017 0.77054 0.78214 1.18723 1.21867 1.22209 1.21732 0.93636 0.98038 0.85221 1.22343 0.95200 1.02107 0.96931 1.23070 1.04849 0.97458 0.96822 1.23030 0.93480 1.02077 1.03065 0.93088 0.91901 0.92675 0.86565 0.87317 0.75115 0.92761 0.91068 0.89652 0.91253 0.96860 0.97894 0.94473 0.96616 0.93125 0.86665 0.89557 0.87893 0.87646 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.92 71.98 0.64 -2.06 16 2 C -0.04 -0.73 2.19 -10.79 -0.02 -0.75 16 3 H 0.06 1.22 7.71 -2.39 -0.02 1.20 16 4 C -0.13 -2.05 5.09 29.85 0.15 -1.90 16 5 C 0.51 11.94 7.55 87.66 0.66 12.61 16 6 O -0.58 -18.26 13.96 -3.04 -0.04 -18.30 16 7 N -0.72 -16.08 5.41 -463.08 -2.50 -18.59 16 8 C 0.14 3.84 5.12 86.38 0.44 4.29 16 9 C -0.10 -2.93 3.10 -9.40 -0.03 -2.96 16 10 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 11 C -0.12 -4.37 6.42 31.78 0.20 -4.17 16 12 C 0.18 9.01 5.38 86.68 0.47 9.48 16 13 N -0.63 -32.05 3.40 -691.30 -2.35 -34.40 16 14 C -0.24 -13.35 10.28 84.03 0.86 -12.48 16 15 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 16 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 17 N -0.95 -57.88 10.34 21.65 0.22 -57.65 16 18 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 C 0.14 5.32 6.40 86.85 0.56 5.88 16 23 C -0.15 -1.97 5.15 -10.79 -0.06 -2.02 16 24 C -0.19 -2.44 10.18 30.59 0.31 -2.13 16 25 C -0.18 -2.21 9.67 30.60 0.30 -1.91 16 26 H 0.05 1.23 5.95 -2.39 -0.01 1.21 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 1.43 7.12 -2.39 -0.02 1.41 16 31 H 0.41 7.44 8.34 -92.71 -0.77 6.67 16 32 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 36 H 0.01 0.73 7.39 -2.38 -0.02 0.71 16 37 H 0.00 0.16 7.52 -2.39 -0.02 0.14 16 38 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.12 1.30 8.11 -2.39 -0.02 1.28 16 42 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 43 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 1.19 7.58 -2.39 -0.02 1.18 16 Total: -1.00 -70.23 356.25 2.48 -67.75 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.18 Total: 15.17 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.95 Total: -1.67 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.63 Total: -110.64 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.04 Total: -18.30 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.23 2.48 -67.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663645069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.472 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds