Wall clock time and date at job start Tue Mar 31 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47314 * 119.99989 * 2 1 3 5 5 C 1.50704 * 109.47000 * 295.00205 * 4 2 1 6 6 O 1.21284 * 119.99954 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00211 * 179.97438 * 5 4 2 8 8 C 1.46490 * 120.00173 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47286 * 35.00331 * 8 7 5 10 10 C 1.53005 * 109.47100 * 155.00275 * 8 7 5 11 11 N 1.46492 * 109.47178 * 305.00128 * 10 8 7 12 12 C 1.36942 * 120.00167 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99526 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00016 * 179.97438 * 12 11 10 15 15 N 1.31615 * 119.99867 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47187 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46948 * 119.99776 * 16 14 12 19 19 H 1.48495 * 109.47191 * 239.99712 * 16 14 12 20 20 C 1.52997 * 109.47264 * 275.00131 * 8 7 5 21 21 C 1.53002 * 117.50137 * 128.74646 * 20 8 7 22 22 C 1.53006 * 117.49814 * 60.08863 * 20 8 7 23 23 C 1.53003 * 109.47408 * 240.00295 * 2 1 3 24 24 C 1.53000 * 117.49792 * 59.99743 * 23 2 1 25 25 C 1.53002 * 60.02940 * 107.48056 * 24 23 2 26 26 H 1.08998 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47285 * 300.00169 * 1 2 3 28 28 H 1.09003 * 109.46949 * 59.99964 * 1 2 3 29 29 H 1.09001 * 109.47093 * 54.99656 * 4 2 1 30 30 H 1.08998 * 109.47423 * 175.00343 * 4 2 1 31 31 H 0.97005 * 119.99555 * 0.02562 * 7 5 4 32 32 H 1.09007 * 109.46767 * 64.99844 * 10 8 7 33 33 H 1.08994 * 109.46988 * 184.99724 * 10 8 7 34 34 H 0.97003 * 120.00086 * 0.02562 * 11 10 8 35 35 H 0.96997 * 119.99896 * 180.02562 * 15 14 12 36 36 H 1.09002 * 115.55374 * 274.41674 * 20 8 7 37 37 H 1.09007 * 117.49459 * 0.02562 * 21 20 8 38 38 H 1.08998 * 117.50020 * 145.01665 * 21 20 8 39 39 H 1.08999 * 117.49420 * 214.97810 * 22 20 8 40 40 H 1.08993 * 117.49863 * 359.97438 * 22 20 8 41 41 H 1.08999 * 115.55832 * 274.31360 * 23 2 1 42 42 H 1.09002 * 117.49833 * 214.98161 * 24 23 2 43 43 H 1.09002 * 117.49953 * 359.97438 * 24 23 2 44 44 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 45 45 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0108 1.0870 2.3633 7 7 1.9844 -0.3918 3.7002 8 6 1.5964 0.3644 4.8933 9 1 0.6202 0.8218 4.7320 10 6 1.5247 -0.5800 6.0949 11 7 0.6215 -1.6921 5.7887 12 6 0.3994 -2.6703 6.7209 13 1 0.8898 -2.6217 7.6819 14 6 -0.4569 -3.7238 6.4310 15 7 -1.0548 -3.7826 5.2600 16 14 -0.7604 -5.0577 7.7029 17 1 0.0246 -4.7613 8.9282 18 1 -2.2060 -5.1004 8.0400 19 1 -0.3416 -6.3715 7.1519 20 6 2.6329 1.4567 5.1643 21 6 2.1193 2.8839 5.3650 22 6 2.8523 2.5083 4.0748 23 6 2.0401 -0.7212 -1.2493 24 6 1.6358 -0.1494 -2.6096 25 6 3.0743 0.0059 -2.1122 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 2.4884 -1.2157 3.7908 32 1 2.5198 -0.9691 6.3110 33 1 1.1508 -0.0365 6.9624 34 1 0.1814 -1.7359 4.9254 35 1 -1.6534 -4.5185 5.0576 36 1 3.5004 1.1474 5.7473 37 1 1.0428 3.0446 5.3044 38 1 2.6491 3.5136 6.0798 39 1 3.8642 2.8910 3.9413 40 1 2.2586 2.4217 3.1649 41 1 2.1271 -1.8044 -1.1644 42 1 1.4569 -0.8564 -3.4197 43 1 1.0060 0.7403 -2.6146 44 1 3.8419 -0.5989 -2.5951 45 1 3.3909 0.9978 -1.7897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716631799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:57 Heat of formation + Delta-G solvation = 7.936706 kcal Electronic energy + Delta-G solvation = -22459.302398 eV Core-core repulsion = 19285.123923 eV Total energy + Delta-G solvation = -3174.178475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92607 -38.15429 -36.97275 -34.98448 -33.33968 -33.01469 -31.11238 -28.57118 -27.02942 -24.14617 -23.55991 -22.35352 -22.11411 -21.49060 -20.51015 -19.91879 -19.61612 -17.29262 -16.60864 -16.20565 -15.51693 -15.31775 -14.96298 -14.70799 -14.30625 -14.06104 -13.33801 -13.20279 -13.17460 -12.90933 -12.79347 -12.22296 -11.86965 -11.67948 -11.64826 -11.35571 -11.11041 -11.06213 -10.95981 -10.89302 -10.83237 -10.65953 -10.33597 -10.16111 -10.08585 -9.93570 -9.90408 -9.68526 -9.29586 -8.92846 -8.52469 -6.97280 -5.79825 -3.09415 3.01050 3.40840 3.45820 3.47579 3.49166 3.73533 4.16997 4.54731 4.61734 4.78817 4.86117 4.91543 4.99227 5.18386 5.22838 5.30444 5.36028 5.47142 5.51277 5.52526 5.54975 5.66260 5.79586 5.81576 5.83985 5.87247 5.93411 5.96402 6.00516 6.02393 6.10869 6.24324 6.25847 6.38641 6.46673 6.50236 6.54156 6.63807 6.73456 7.01620 7.67333 7.96172 8.38199 8.64984 9.50185 10.06068 10.41724 11.42633 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.004649 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.861208 B = 6020.839980 C = 7652.857724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.518 3.482 6 O -0.546 6.546 7 N -0.709 5.709 8 C 0.168 3.832 9 H 0.087 0.913 10 C 0.148 3.852 11 N -0.731 5.731 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.292 1.292 20 C -0.162 4.162 21 C -0.172 4.172 22 C -0.185 4.185 23 C -0.147 4.147 24 C -0.179 4.179 25 C -0.183 4.183 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.403 0.597 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.412 9.076 -10.983 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.059 4.059 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.305 3.695 6 O -0.425 6.425 7 N -0.358 5.358 8 C 0.064 3.936 9 H 0.105 0.895 10 C 0.020 3.980 11 N -0.376 5.376 12 C -0.373 4.373 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.182 4.182 21 C -0.210 4.210 22 C -0.222 4.222 23 C -0.165 4.165 24 C -0.216 4.216 25 C -0.220 4.220 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.238 0.762 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.960 9.697 -10.887 17.113 hybrid contribution -0.021 -1.321 0.532 1.424 sum 8.939 8.377 -10.355 16.041 Atomic orbital electron populations 1.21927 0.94289 1.01832 1.02741 1.20411 0.96493 0.98536 0.90430 0.90666 1.21716 1.02561 1.00743 0.92634 1.20541 0.78755 0.85454 0.84724 1.90558 1.40357 1.24950 1.86674 1.45995 1.57174 1.27307 1.05343 1.20761 0.96691 0.91038 0.85155 0.89539 1.20912 0.94405 0.89041 0.93649 1.42352 1.53179 1.24137 1.17966 1.19266 1.21914 1.00385 0.95726 0.91101 1.24740 0.99866 0.99086 0.97092 1.69674 1.33787 1.33129 1.21328 0.86126 0.77621 0.81881 0.80595 1.20551 1.21858 1.21872 1.22652 1.01422 0.90419 1.03688 1.22889 1.00718 0.97211 1.00159 1.23263 1.01212 1.02724 0.94964 1.22406 1.03169 0.99238 0.91662 1.22907 0.97948 1.03359 0.97383 1.23026 0.92462 1.02029 1.04517 0.93084 0.90364 0.93314 0.88577 0.89248 0.76211 0.95833 0.94831 0.77990 0.93542 0.88044 0.88793 0.89328 0.90061 0.86384 0.87783 0.89086 0.88811 0.89139 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.77 37.16 0.33 -1.70 16 2 C -0.04 -0.48 2.19 -90.62 -0.20 -0.68 16 3 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 4 C -0.14 -1.69 5.16 -27.88 -0.14 -1.83 16 5 C 0.52 8.00 6.88 -10.98 -0.08 7.92 16 6 O -0.55 -9.65 10.99 5.55 0.06 -9.59 16 7 N -0.71 -11.11 4.50 -53.81 -0.24 -11.35 16 8 C 0.17 2.84 2.43 -67.93 -0.17 2.67 16 9 H 0.09 1.67 7.33 -51.93 -0.38 1.29 16 10 C 0.15 2.89 5.80 -4.04 -0.02 2.87 16 11 N -0.73 -17.99 5.43 -59.91 -0.33 -18.32 16 12 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 13 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 16 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C -0.16 -2.32 5.36 -90.62 -0.49 -2.81 16 21 C -0.17 -2.31 10.18 -26.69 -0.27 -2.58 16 22 C -0.18 -2.55 9.74 -26.69 -0.26 -2.81 16 23 C -0.15 -1.50 5.15 -90.58 -0.47 -1.97 16 24 C -0.18 -1.67 9.73 -26.73 -0.26 -1.93 16 25 C -0.18 -1.66 10.18 -26.69 -0.27 -1.94 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.25 5.95 -51.93 -0.31 0.94 16 28 H 0.05 0.59 7.29 -51.93 -0.38 0.21 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.40 6.06 8.60 -40.82 -0.35 5.70 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.39 10.11 7.33 -40.82 -0.30 9.81 16 35 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 37 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.12 1.87 5.02 -51.93 -0.26 1.61 16 41 H 0.10 1.04 8.11 -51.93 -0.42 0.61 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.89 7.61 -51.93 -0.39 0.49 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.83 8.05 -51.93 -0.42 0.42 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -30.11 360.51 -9.72 -39.83 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -7.80 Total: 15.91 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.54 Total: -11.99 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.16 Total: -56.70 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.06 Total: -9.59 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.11 -9.72 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.769 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds