Wall clock time and date at job start Tue Mar 31 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47314 * 119.99989 * 2 1 3 5 5 C 1.50704 * 109.47000 * 295.00205 * 4 2 1 6 6 O 1.21284 * 119.99954 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00211 * 179.97438 * 5 4 2 8 8 C 1.46490 * 120.00173 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47286 * 35.00331 * 8 7 5 10 10 C 1.53005 * 109.47100 * 155.00275 * 8 7 5 11 11 N 1.46492 * 109.47178 * 305.00128 * 10 8 7 12 12 C 1.36942 * 120.00167 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99526 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00016 * 179.97438 * 12 11 10 15 15 N 1.31615 * 119.99867 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47187 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46948 * 119.99776 * 16 14 12 19 19 H 1.48495 * 109.47191 * 239.99712 * 16 14 12 20 20 C 1.52997 * 109.47264 * 275.00131 * 8 7 5 21 21 C 1.53002 * 117.50137 * 128.74646 * 20 8 7 22 22 C 1.53006 * 117.49814 * 60.08863 * 20 8 7 23 23 C 1.53003 * 109.47408 * 240.00295 * 2 1 3 24 24 C 1.53000 * 117.49792 * 59.99743 * 23 2 1 25 25 C 1.53002 * 60.02940 * 107.48056 * 24 23 2 26 26 H 1.08998 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47285 * 300.00169 * 1 2 3 28 28 H 1.09003 * 109.46949 * 59.99964 * 1 2 3 29 29 H 1.09001 * 109.47093 * 54.99656 * 4 2 1 30 30 H 1.08998 * 109.47423 * 175.00343 * 4 2 1 31 31 H 0.97005 * 119.99555 * 0.02562 * 7 5 4 32 32 H 1.09007 * 109.46767 * 64.99844 * 10 8 7 33 33 H 1.08994 * 109.46988 * 184.99724 * 10 8 7 34 34 H 0.97003 * 120.00086 * 0.02562 * 11 10 8 35 35 H 0.96997 * 119.99896 * 180.02562 * 15 14 12 36 36 H 1.09002 * 115.55374 * 274.41674 * 20 8 7 37 37 H 1.09007 * 117.49459 * 0.02562 * 21 20 8 38 38 H 1.08998 * 117.50020 * 145.01665 * 21 20 8 39 39 H 1.08999 * 117.49420 * 214.97810 * 22 20 8 40 40 H 1.08993 * 117.49863 * 359.97438 * 22 20 8 41 41 H 1.08999 * 115.55832 * 274.31360 * 23 2 1 42 42 H 1.09002 * 117.49833 * 214.98161 * 24 23 2 43 43 H 1.09002 * 117.49953 * 359.97438 * 24 23 2 44 44 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 45 45 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0108 1.0870 2.3633 7 7 1.9844 -0.3918 3.7002 8 6 1.5964 0.3644 4.8933 9 1 0.6202 0.8218 4.7320 10 6 1.5247 -0.5800 6.0949 11 7 0.6215 -1.6921 5.7887 12 6 0.3994 -2.6703 6.7209 13 1 0.8898 -2.6217 7.6819 14 6 -0.4569 -3.7238 6.4310 15 7 -1.0548 -3.7826 5.2600 16 14 -0.7604 -5.0577 7.7029 17 1 0.0246 -4.7613 8.9282 18 1 -2.2060 -5.1004 8.0400 19 1 -0.3416 -6.3715 7.1519 20 6 2.6329 1.4567 5.1643 21 6 2.1193 2.8839 5.3650 22 6 2.8523 2.5083 4.0748 23 6 2.0401 -0.7212 -1.2493 24 6 1.6358 -0.1494 -2.6096 25 6 3.0743 0.0059 -2.1122 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 2.4884 -1.2157 3.7908 32 1 2.5198 -0.9691 6.3110 33 1 1.1508 -0.0365 6.9624 34 1 0.1814 -1.7359 4.9254 35 1 -1.6534 -4.5185 5.0576 36 1 3.5004 1.1474 5.7473 37 1 1.0428 3.0446 5.3044 38 1 2.6491 3.5136 6.0798 39 1 3.8642 2.8910 3.9413 40 1 2.2586 2.4217 3.1649 41 1 2.1271 -1.8044 -1.1644 42 1 1.4569 -0.8564 -3.4197 43 1 1.0060 0.7403 -2.6146 44 1 3.8419 -0.5989 -2.5951 45 1 3.3909 0.9978 -1.7897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716631799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:56 Heat of formation + Delta-G solvation = -9.178793 kcal Electronic energy + Delta-G solvation = -22460.044582 eV Core-core repulsion = 19285.123923 eV Total energy + Delta-G solvation = -3174.920659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.16395 -39.14168 -38.10515 -36.60793 -34.91917 -34.01303 -32.96574 -30.07847 -28.31702 -25.92733 -24.66212 -23.25986 -23.06865 -23.04468 -21.67084 -21.19302 -20.58409 -19.23315 -17.89388 -17.39445 -16.66803 -16.63199 -16.41726 -15.84256 -15.68806 -15.35044 -14.96944 -14.70127 -14.46268 -14.15665 -13.96200 -13.69394 -13.17971 -13.01031 -12.82693 -12.68763 -12.49359 -12.37820 -12.33879 -12.10763 -12.03765 -11.99318 -11.84404 -11.66430 -11.22992 -11.14266 -11.06371 -10.99207 -10.75150 -10.50042 -9.82825 -9.01511 -7.94621 -5.24185 1.48363 1.49310 1.59074 1.78088 2.25643 2.56026 2.96124 3.05475 3.39936 3.59984 3.72319 3.82665 3.97578 4.06770 4.11192 4.14592 4.18471 4.25527 4.36541 4.44736 4.48811 4.57134 4.65427 4.68018 4.76616 4.83406 4.84171 4.91342 4.95821 5.04300 5.06089 5.08968 5.13749 5.27168 5.30828 5.32750 5.37900 5.47291 5.50632 5.54637 5.68850 6.26313 6.70949 7.33792 7.41130 8.06655 8.31208 9.28650 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.004649 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.861208 B = 6020.839980 C = 7652.857724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 H 0.066 0.934 4 C -0.130 4.130 5 C 0.512 3.488 6 O -0.571 6.571 7 N -0.708 5.708 8 C 0.179 3.821 9 H 0.055 0.945 10 C 0.150 3.850 11 N -0.742 5.742 12 C -0.244 4.244 13 H 0.078 0.922 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.972 3.028 17 H -0.265 1.265 18 H -0.297 1.297 19 H -0.292 1.292 20 C -0.164 4.164 21 C -0.168 4.168 22 C -0.179 4.179 23 C -0.156 4.156 24 C -0.180 4.180 25 C -0.174 4.174 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.407 0.593 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.380 9.102 -10.908 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 H 0.085 0.915 4 C -0.169 4.169 5 C 0.301 3.699 6 O -0.452 6.452 7 N -0.358 5.358 8 C 0.074 3.926 9 H 0.073 0.927 10 C 0.023 3.977 11 N -0.386 5.386 12 C -0.376 4.376 13 H 0.096 0.904 14 C -0.264 4.264 15 N -0.618 5.618 16 Si 0.801 3.199 17 H -0.189 1.189 18 H -0.225 1.225 19 H -0.219 1.219 20 C -0.184 4.184 21 C -0.205 4.205 22 C -0.216 4.216 23 C -0.174 4.174 24 C -0.217 4.217 25 C -0.210 4.210 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.243 0.757 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.966 9.745 -10.791 18.212 hybrid contribution -0.646 -1.246 0.512 1.493 sum 10.320 8.500 -10.279 16.865 Atomic orbital electron populations 1.21867 0.95724 1.01165 1.01710 1.20311 0.95204 0.98326 0.91337 0.91529 1.21734 1.04152 0.99942 0.91111 1.21104 0.78138 0.85336 0.85341 1.90557 1.41351 1.26236 1.87027 1.45988 1.57189 1.27417 1.05213 1.20482 0.96355 0.91117 0.84654 0.92675 1.21027 0.93823 0.88060 0.94749 1.42516 1.53924 1.25028 1.17082 1.19666 1.21055 1.00625 0.96236 0.90396 1.25529 1.00344 1.01548 0.98982 1.69830 1.34873 1.33843 1.23280 0.85095 0.77008 0.78972 0.78788 1.18949 1.22478 1.21926 1.22558 1.01220 0.89928 1.04667 1.22971 1.00264 0.96774 1.00499 1.23201 1.02013 1.02323 0.94063 1.22311 1.04602 0.99379 0.91085 1.22980 0.98310 1.03369 0.97011 1.23091 0.92520 1.01997 1.03435 0.93495 0.93436 0.92238 0.88655 0.86644 0.75740 0.94243 0.94922 0.79321 0.94090 0.86284 0.90221 0.86773 0.87873 0.88592 0.87252 0.87949 0.89198 0.87666 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.77 71.98 0.63 -3.43 16 2 C -0.03 -0.78 2.19 -10.79 -0.02 -0.80 16 3 H 0.07 1.70 7.71 -2.38 -0.02 1.68 16 4 C -0.13 -3.14 5.16 29.85 0.15 -2.99 16 5 C 0.51 16.01 6.88 87.66 0.60 16.62 16 6 O -0.57 -20.90 10.99 -3.04 -0.03 -20.93 16 7 N -0.71 -22.22 4.50 -442.54 -1.99 -24.21 16 8 C 0.18 6.05 2.43 44.99 0.11 6.16 16 9 H 0.06 2.21 7.33 -2.39 -0.02 2.20 16 10 C 0.15 5.79 5.80 86.38 0.50 6.29 16 11 N -0.74 -36.74 5.43 -343.45 -1.87 -38.61 16 12 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 13 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 14 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 15 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 16 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 20 C -0.16 -4.47 5.36 -10.79 -0.06 -4.53 16 21 C -0.17 -4.25 10.18 30.62 0.31 -3.94 16 22 C -0.18 -4.69 9.74 30.62 0.30 -4.40 16 23 C -0.16 -2.95 5.15 -10.77 -0.06 -3.01 16 24 C -0.18 -3.07 9.73 30.60 0.30 -2.77 16 25 C -0.17 -2.78 10.18 30.62 0.31 -2.46 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.60 5.95 -2.39 -0.01 1.58 16 28 H 0.06 1.46 7.29 -2.39 -0.02 1.44 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.41 12.06 8.60 -92.70 -0.80 11.26 16 32 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.37 20.09 7.33 -92.71 -0.68 19.41 16 35 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 37 H 0.08 2.25 8.05 -2.38 -0.02 2.23 16 38 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.10 3.03 5.02 -2.39 -0.01 3.02 16 41 H 0.11 1.98 8.11 -2.39 -0.02 1.96 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.60 7.61 -2.39 -0.02 1.58 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16 Total: -1.00 -64.81 360.51 2.31 -62.50 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.50 Total: 47.37 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.39 Total: -15.30 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -3.57 Total: -121.14 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.03 Total: -20.93 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -64.81 2.31 -62.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.323 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds