Wall clock time and date at job start Tue Mar 31 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00263 * 2 1 3 5 5 C 1.50702 * 109.46812 * 295.00122 * 4 2 1 6 6 O 1.21277 * 120.00379 * 359.97438 * 5 4 2 7 7 N 1.34784 * 120.00038 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00058 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47359 * 324.99960 * 8 7 5 10 10 C 1.53003 * 109.46914 * 204.99893 * 8 7 5 11 11 N 1.46496 * 109.47175 * 54.99919 * 10 8 7 12 12 C 1.36939 * 119.99936 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00007 * 0.02562 * 12 11 10 14 14 C 1.38809 * 119.99830 * 179.97438 * 12 11 10 15 15 N 1.31622 * 120.00409 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99956 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46949 * 90.00539 * 16 14 12 18 18 H 1.48498 * 109.47428 * 210.00359 * 16 14 12 19 19 H 1.48498 * 109.47386 * 330.00435 * 16 14 12 20 20 C 1.52996 * 109.47058 * 85.00150 * 8 7 5 21 21 C 1.53003 * 117.50120 * 8.74633 * 20 8 7 22 22 C 1.52996 * 117.49921 * 300.08423 * 20 8 7 23 23 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 24 24 C 1.53000 * 117.49997 * 179.97438 * 23 2 1 25 25 C 1.53002 * 60.02940 * 252.49592 * 24 23 2 26 26 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 27 27 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47238 * 54.99814 * 4 2 1 30 30 H 1.08998 * 109.47246 * 175.00238 * 4 2 1 31 31 H 0.97007 * 119.99605 * 359.97438 * 7 5 4 32 32 H 1.09005 * 109.46955 * 175.00166 * 10 8 7 33 33 H 1.09003 * 109.46869 * 294.99742 * 10 8 7 34 34 H 0.96999 * 120.00171 * 0.02562 * 11 10 8 35 35 H 0.96992 * 120.00173 * 179.97438 * 15 14 12 36 36 H 1.09007 * 115.55086 * 154.41332 * 20 8 7 37 37 H 1.08994 * 117.49678 * 359.97438 * 21 20 8 38 38 H 1.09001 * 117.50233 * 145.02493 * 21 20 8 39 39 H 1.09009 * 117.50094 * 214.98154 * 22 20 8 40 40 H 1.08997 * 117.50154 * 359.97438 * 22 20 8 41 41 H 1.09008 * 115.56055 * 325.68508 * 23 2 1 42 42 H 1.09002 * 117.49833 * 359.97438 * 24 23 2 43 43 H 1.09002 * 117.49953 * 144.99738 * 24 23 2 44 44 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 45 45 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0570 2.4765 6 8 1.0116 1.0873 2.3633 7 7 1.9853 -0.3914 3.7001 8 6 1.5982 0.3654 4.8932 9 1 1.6293 1.4324 4.6726 10 6 2.5692 0.0518 6.0333 11 7 3.9411 0.3167 5.5931 12 6 4.9878 0.1073 6.4509 13 1 4.8020 -0.2534 7.4517 14 6 6.2878 0.3578 6.0336 15 7 6.5144 0.7970 4.8137 16 14 7.7157 0.0716 7.2035 17 1 8.2024 -1.3239 7.0584 18 1 8.8161 1.0154 6.8818 19 1 7.2640 0.2955 8.6002 20 6 0.1794 -0.0283 5.3088 21 6 -0.4630 -1.2168 4.5906 22 6 -0.9439 0.2065 4.2970 23 6 2.0399 -0.7211 -1.2493 24 6 3.5550 -0.8274 -1.4346 25 6 2.7419 0.1229 -2.3160 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7994 1.2055 31 1 2.4893 -1.2154 3.7907 32 1 2.3355 0.6803 6.8927 33 1 2.4736 -0.9972 6.3137 34 1 4.1080 0.6410 4.6944 35 1 7.4228 0.9723 4.5223 36 1 -0.0567 0.1096 6.3640 37 1 0.1250 -1.7179 3.8218 38 1 -1.1222 -1.8605 5.1731 39 1 -1.9193 0.4985 4.6864 40 1 -0.6723 0.6418 3.3353 41 1 1.4309 -1.5583 -1.5906 42 1 4.1883 -0.3832 -0.6668 43 1 3.9430 -1.7349 -1.8974 44 1 2.8404 1.1920 -2.1278 45 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716631800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:01 Heat of formation + Delta-G solvation = 12.119281 kcal Electronic energy + Delta-G solvation = -22696.399714 eV Core-core repulsion = 19522.402609 eV Total energy + Delta-G solvation = -3173.997105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11167 -38.17859 -36.88398 -34.88396 -33.23313 -33.02580 -31.17278 -28.67932 -27.16702 -24.11244 -23.44079 -22.36652 -22.21849 -21.47700 -20.75539 -19.59853 -19.51145 -17.33391 -16.70737 -15.99854 -15.84545 -15.47250 -14.87719 -14.52779 -14.42434 -13.87525 -13.53332 -13.25232 -13.08667 -12.91443 -12.78808 -12.04683 -12.01462 -11.59028 -11.56513 -11.37199 -11.30050 -11.19964 -11.07115 -10.88271 -10.83358 -10.74902 -10.22993 -10.20209 -10.07984 -9.97071 -9.79756 -9.55735 -9.29864 -8.92180 -8.56565 -6.97236 -5.79707 -3.09306 2.97949 3.41148 3.46754 3.48300 3.49039 3.80521 4.09512 4.54769 4.61680 4.82824 4.89776 4.94109 5.01886 5.20497 5.22992 5.23248 5.28347 5.46369 5.53155 5.57290 5.62196 5.64828 5.71633 5.80704 5.85800 5.87215 5.87655 6.03236 6.04065 6.08694 6.12968 6.16345 6.24930 6.34201 6.40495 6.45464 6.51645 6.60371 6.72511 7.00177 7.66808 7.92791 8.38359 8.61879 9.50256 10.06206 10.41793 11.42700 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.005103 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.069270 B = 5485.736482 C = 7315.948971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 H 0.079 0.921 4 C -0.137 4.137 5 C 0.516 3.484 6 O -0.543 6.543 7 N -0.710 5.710 8 C 0.168 3.832 9 H 0.090 0.910 10 C 0.148 3.852 11 N -0.731 5.731 12 C -0.242 4.242 13 H 0.070 0.930 14 C -0.011 4.011 15 N -0.931 5.931 16 Si 0.907 3.093 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.187 4.187 23 C -0.148 4.148 24 C -0.182 4.182 25 C -0.180 4.180 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.404 0.596 32 H 0.033 0.967 33 H 0.025 0.975 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 -5.305 -9.694 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 H 0.097 0.903 4 C -0.177 4.177 5 C 0.303 3.697 6 O -0.422 6.422 7 N -0.360 5.360 8 C 0.063 3.937 9 H 0.108 0.892 10 C 0.020 3.980 11 N -0.376 5.376 12 C -0.373 4.373 13 H 0.088 0.912 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.180 4.180 21 C -0.214 4.214 22 C -0.224 4.224 23 C -0.166 4.166 24 C -0.219 4.219 25 C -0.217 4.217 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.239 0.761 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.030 -4.599 -9.608 16.830 hybrid contribution 1.246 -0.541 0.469 1.437 sum -11.784 -5.140 -9.139 15.774 Atomic orbital electron populations 1.21913 0.94523 1.01168 1.02908 1.20425 0.96224 0.98971 0.90495 0.90301 1.21734 1.03446 0.99917 0.92605 1.20600 0.78800 0.85594 0.84720 1.90569 1.40353 1.24636 1.86606 1.46028 1.56691 1.27878 1.05436 1.20711 0.91080 0.96866 0.85043 0.89243 1.20907 0.85359 0.98136 0.93622 1.42342 0.99578 1.80178 1.15509 1.19217 0.85884 1.37203 0.95018 0.91156 1.24738 0.97357 1.01990 0.96682 1.69663 1.19915 1.51481 1.16923 0.86193 0.82484 0.77411 0.80096 1.21724 1.21781 1.20756 1.22697 0.93939 1.03503 0.97838 1.22873 1.03659 0.91240 1.03664 1.23344 0.97715 0.98930 1.02411 1.22402 0.94791 1.01764 0.97682 1.22989 0.93973 1.01615 1.03288 1.23002 1.04938 0.97818 0.95973 0.90431 0.93151 0.93562 0.89329 0.88570 0.76102 0.94979 0.95679 0.78005 0.93500 0.87466 0.89029 0.89664 0.89921 0.86423 0.88039 0.88345 0.88993 0.88782 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.92 37.16 0.33 -1.38 16 2 C -0.04 -0.51 2.19 -90.63 -0.20 -0.70 16 3 H 0.08 1.10 7.71 -51.93 -0.40 0.70 16 4 C -0.14 -1.69 5.09 -27.88 -0.14 -1.83 16 5 C 0.52 7.88 6.38 -10.98 -0.07 7.81 16 6 O -0.54 -9.57 11.00 5.56 0.06 -9.51 16 7 N -0.71 -10.97 3.05 -53.81 -0.16 -11.13 16 8 C 0.17 2.81 2.59 -67.93 -0.18 2.64 16 9 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 10 C 0.15 2.87 5.80 -4.04 -0.02 2.85 16 11 N -0.73 -17.95 5.43 -59.91 -0.33 -18.27 16 12 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 16 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.16 -2.28 5.70 -90.62 -0.52 -2.79 16 21 C -0.18 -2.25 9.74 -26.69 -0.26 -2.51 16 22 C -0.19 -2.57 9.82 -26.69 -0.26 -2.83 16 23 C -0.15 -1.53 5.15 -90.59 -0.47 -2.00 16 24 C -0.18 -1.89 9.67 -26.73 -0.26 -2.15 16 25 C -0.18 -1.80 10.18 -26.69 -0.27 -2.07 16 26 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 1.22 7.13 -51.93 -0.37 0.85 16 31 H 0.40 6.04 8.60 -40.82 -0.35 5.68 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.39 10.09 7.33 -40.82 -0.30 9.79 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 37 H 0.09 1.17 6.67 -51.93 -0.35 0.82 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.12 1.84 5.02 -51.93 -0.26 1.58 16 41 H 0.10 0.95 8.11 -51.92 -0.42 0.53 16 42 H 0.10 1.14 7.59 -51.93 -0.39 0.75 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -30.02 357.42 -9.64 -39.66 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -7.74 Total: 16.01 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.56 Total: -12.20 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.23 Total: -56.45 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.06 Total: -9.51 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.02 -9.64 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.782 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds