Wall clock time and date at job start Tue Mar 31 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 O 1.21274 * 120.00042 * 359.72068 * 5 4 2 7 7 N 1.34777 * 119.99766 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00266 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46908 * 35.00463 * 8 7 5 10 10 C 1.52995 * 109.47468 * 155.00186 * 8 7 5 11 11 N 1.46499 * 109.47232 * 305.00535 * 10 8 7 12 12 C 1.36935 * 120.00152 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00578 * 359.97438 * 12 11 10 14 14 C 1.38812 * 119.99978 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00176 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00268 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47082 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47479 * 119.99814 * 16 14 12 19 19 H 1.48498 * 109.47530 * 240.00317 * 16 14 12 20 20 C 1.53000 * 109.47519 * 275.00721 * 8 7 5 21 21 C 1.52992 * 117.50327 * 128.74325 * 20 8 7 22 22 C 1.53000 * 117.50080 * 60.07803 * 20 8 7 23 23 C 1.53003 * 109.46755 * 119.99953 * 2 1 3 24 24 C 1.52998 * 117.49971 * 248.61601 * 23 2 1 25 25 C 1.52996 * 60.00297 * 252.51291 * 24 23 2 26 26 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 28 28 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 29 29 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 30 30 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 31 31 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.46928 * 64.99895 * 10 8 7 33 33 H 1.08994 * 109.47527 * 185.00621 * 10 8 7 34 34 H 0.96995 * 119.99892 * 359.97438 * 11 10 8 35 35 H 0.97004 * 120.00257 * 179.97438 * 15 14 12 36 36 H 1.09002 * 115.54631 * 274.41350 * 20 8 7 37 37 H 1.09000 * 117.49863 * 359.97438 * 21 20 8 38 38 H 1.09003 * 117.50143 * 145.01815 * 21 20 8 39 39 H 1.08996 * 117.50520 * 214.98412 * 22 20 8 40 40 H 1.09001 * 117.49658 * 359.97438 * 22 20 8 41 41 H 1.08998 * 115.55019 * 34.33364 * 23 2 1 42 42 H 1.09004 * 117.49809 * 0.02562 * 24 23 2 43 43 H 1.08998 * 117.50049 * 145.01998 * 24 23 2 44 44 H 1.08993 * 117.50131 * 252.50699 * 25 24 23 45 45 H 1.09001 * 117.49506 * 107.48744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0070 1.0845 -2.3635 7 7 1.9853 -0.3914 -3.7001 8 6 1.5973 0.3649 -4.8932 9 1 1.6278 1.4319 -4.6729 10 6 2.5680 0.0517 -6.0336 11 7 3.9400 0.3176 -5.5939 12 6 4.9866 0.1078 -6.4516 13 1 4.8009 -0.2540 -7.4521 14 6 6.2865 0.3603 -6.0352 15 7 6.5131 0.8017 -4.8161 16 14 7.7144 0.0735 -7.2049 17 1 7.1967 -0.4201 -8.5064 18 1 8.4459 1.3486 -7.4152 19 1 8.6358 -0.9356 -6.6234 20 6 0.1786 -0.0298 -5.3083 21 6 -0.8297 1.0977 -5.5381 22 6 -0.9452 0.2082 -4.2977 23 6 2.0399 -0.7213 1.2493 24 6 2.7419 0.1225 2.3152 25 6 3.5550 -0.8282 1.4344 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6053 -1.7199 -1.2951 30 1 3.1263 -0.7995 -1.2056 31 1 2.4891 -1.2153 -3.7907 32 1 2.4732 -0.9974 -6.3137 33 1 2.3338 0.6799 -6.8930 34 1 4.1070 0.6422 -4.6953 35 1 7.4215 0.9777 -4.5249 36 1 0.1033 -0.9101 -5.9467 37 1 -0.4825 2.1207 -5.3932 38 1 -1.5686 0.9591 -6.3274 39 1 -1.7600 -0.5152 -4.2713 40 1 -0.6737 0.6455 -3.3369 41 1 1.4310 -1.5585 1.5902 42 1 2.8401 1.1916 2.1266 43 1 2.5947 -0.1593 3.3577 44 1 3.9427 -1.7355 1.8974 45 1 4.1883 -0.3846 0.6661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716631801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:06 Heat of formation + Delta-G solvation = 7.817021 kcal Electronic energy + Delta-G solvation = -22549.530053 eV Core-core repulsion = 19375.346387 eV Total energy + Delta-G solvation = -3174.183665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94769 -38.12952 -36.93453 -34.99025 -33.34784 -33.00771 -31.12074 -28.63654 -27.09057 -24.08267 -23.40341 -22.36983 -22.11626 -21.49400 -20.66523 -19.93740 -19.49392 -17.30773 -16.65230 -16.02668 -15.70967 -15.24869 -14.98375 -14.54645 -14.36712 -14.09116 -13.54523 -13.20138 -12.98180 -12.95438 -12.78808 -12.09256 -12.02407 -11.60640 -11.57863 -11.35194 -11.22326 -11.03092 -11.00170 -10.88905 -10.83324 -10.74582 -10.20552 -10.16101 -10.07301 -9.95974 -9.91292 -9.69234 -9.26982 -8.92704 -8.53777 -6.97443 -5.79992 -3.09610 3.01237 3.40714 3.44832 3.47225 3.49061 3.79490 4.18562 4.54616 4.63368 4.84264 4.90476 4.92095 5.03431 5.19901 5.24606 5.26427 5.33210 5.44329 5.52711 5.57735 5.59918 5.65709 5.72932 5.81788 5.86505 5.87962 5.88371 5.94556 6.08483 6.10722 6.13881 6.16008 6.24417 6.38411 6.41638 6.45890 6.53249 6.60666 6.72014 7.01309 7.67118 7.96410 8.37980 8.65090 9.49985 10.05866 10.41505 11.42460 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.005150 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.383948 B = 5435.893684 C = 7464.464749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.517 3.483 6 O -0.546 6.546 7 N -0.709 5.709 8 C 0.168 3.832 9 H 0.086 0.914 10 C 0.148 3.852 11 N -0.731 5.731 12 C -0.241 4.241 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.162 4.162 21 C -0.172 4.172 22 C -0.185 4.185 23 C -0.148 4.148 24 C -0.180 4.180 25 C -0.182 4.182 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.403 0.597 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.866 -4.777 9.439 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 H 0.097 0.903 4 C -0.177 4.177 5 C 0.305 3.695 6 O -0.426 6.426 7 N -0.358 5.358 8 C 0.063 3.937 9 H 0.104 0.896 10 C 0.020 3.980 11 N -0.376 5.376 12 C -0.373 4.373 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.182 4.182 21 C -0.210 4.210 22 C -0.222 4.222 23 C -0.166 4.166 24 C -0.217 4.217 25 C -0.219 4.219 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.204 -4.089 9.349 16.688 hybrid contribution 1.254 -0.551 -0.454 1.443 sum -11.951 -4.640 8.895 15.604 Atomic orbital electron populations 1.21913 0.94551 1.01151 1.02894 1.20429 0.96216 0.98961 0.90516 0.90322 1.21727 1.03403 0.99943 0.92578 1.20570 0.78739 0.85505 0.84716 1.90553 1.40367 1.25003 1.86647 1.45997 1.56607 1.27858 1.05354 1.20761 0.91022 0.96761 0.85111 0.89558 1.20912 0.85340 0.98038 0.93725 1.42350 0.99590 1.80158 1.15530 1.19266 0.85879 1.37053 0.95059 0.91088 1.24742 0.97369 1.02002 0.96695 1.69679 1.19820 1.51510 1.16952 0.86124 0.82772 0.77333 0.79968 1.20551 1.21869 1.21870 1.22647 0.91385 1.00569 1.03568 1.22889 1.01888 0.96183 1.00029 1.23278 0.99776 1.02844 0.96292 1.22393 0.94785 1.01757 0.97696 1.22990 1.04946 0.97817 0.95982 1.22986 0.93991 1.01609 1.03290 0.93577 0.93177 0.90412 0.89276 0.88627 0.76217 0.95820 0.94828 0.78006 0.93548 0.88052 0.88801 0.89328 0.90056 0.86326 0.88045 0.88789 0.89203 0.88998 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.92 37.16 0.33 -1.39 16 2 C -0.04 -0.51 2.19 -90.62 -0.20 -0.71 16 3 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 4 C -0.14 -1.70 5.09 -27.88 -0.14 -1.85 16 5 C 0.52 8.01 6.89 -10.98 -0.08 7.93 16 6 O -0.55 -9.67 10.97 5.56 0.06 -9.61 16 7 N -0.71 -11.13 4.50 -53.81 -0.24 -11.37 16 8 C 0.17 2.84 2.43 -67.94 -0.17 2.67 16 9 H 0.09 1.67 7.34 -51.93 -0.38 1.29 16 10 C 0.15 2.89 5.80 -4.05 -0.02 2.87 16 11 N -0.73 -18.02 5.43 -59.91 -0.33 -18.34 16 12 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 13 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 16 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C -0.16 -2.31 5.36 -90.62 -0.49 -2.80 16 21 C -0.17 -2.30 10.18 -26.70 -0.27 -2.57 16 22 C -0.19 -2.53 9.74 -26.69 -0.26 -2.79 16 23 C -0.15 -1.54 5.15 -90.62 -0.47 -2.00 16 24 C -0.18 -1.81 10.18 -26.73 -0.27 -2.08 16 25 C -0.18 -1.90 9.67 -26.73 -0.26 -2.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.06 5.94 -51.93 -0.31 0.75 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.22 7.12 -51.93 -0.37 0.85 16 31 H 0.40 6.08 8.60 -40.82 -0.35 5.73 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.39 10.13 7.33 -40.82 -0.30 9.83 16 35 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 37 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.12 1.85 5.01 -51.93 -0.26 1.59 16 41 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 42 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -30.12 360.30 -9.70 -39.82 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -7.79 Total: 16.12 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.53 Total: -12.10 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.16 Total: -56.79 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.06 Total: -9.61 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.12 -9.70 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.639 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds