Wall clock time and date at job start Tue Mar 31 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 O 1.21274 * 120.00042 * 359.72068 * 5 4 2 7 7 N 1.34777 * 119.99766 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00266 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46908 * 35.00463 * 8 7 5 10 10 C 1.52995 * 109.47468 * 155.00186 * 8 7 5 11 11 N 1.46499 * 109.47232 * 305.00535 * 10 8 7 12 12 C 1.36935 * 120.00152 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00578 * 359.97438 * 12 11 10 14 14 C 1.38812 * 119.99978 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00176 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00268 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47082 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47479 * 119.99814 * 16 14 12 19 19 H 1.48498 * 109.47530 * 240.00317 * 16 14 12 20 20 C 1.53000 * 109.47519 * 275.00721 * 8 7 5 21 21 C 1.52992 * 117.50327 * 128.74325 * 20 8 7 22 22 C 1.53000 * 117.50080 * 60.07803 * 20 8 7 23 23 C 1.53003 * 109.46755 * 119.99953 * 2 1 3 24 24 C 1.52998 * 117.49971 * 248.61601 * 23 2 1 25 25 C 1.52996 * 60.00297 * 252.51291 * 24 23 2 26 26 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 28 28 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 29 29 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 30 30 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 31 31 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.46928 * 64.99895 * 10 8 7 33 33 H 1.08994 * 109.47527 * 185.00621 * 10 8 7 34 34 H 0.96995 * 119.99892 * 359.97438 * 11 10 8 35 35 H 0.97004 * 120.00257 * 179.97438 * 15 14 12 36 36 H 1.09002 * 115.54631 * 274.41350 * 20 8 7 37 37 H 1.09000 * 117.49863 * 359.97438 * 21 20 8 38 38 H 1.09003 * 117.50143 * 145.01815 * 21 20 8 39 39 H 1.08996 * 117.50520 * 214.98412 * 22 20 8 40 40 H 1.09001 * 117.49658 * 359.97438 * 22 20 8 41 41 H 1.08998 * 115.55019 * 34.33364 * 23 2 1 42 42 H 1.09004 * 117.49809 * 0.02562 * 24 23 2 43 43 H 1.08998 * 117.50049 * 145.01998 * 24 23 2 44 44 H 1.08993 * 117.50131 * 252.50699 * 25 24 23 45 45 H 1.09001 * 117.49506 * 107.48744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0070 1.0845 -2.3635 7 7 1.9853 -0.3914 -3.7001 8 6 1.5973 0.3649 -4.8932 9 1 1.6278 1.4319 -4.6729 10 6 2.5680 0.0517 -6.0336 11 7 3.9400 0.3176 -5.5939 12 6 4.9866 0.1078 -6.4516 13 1 4.8009 -0.2540 -7.4521 14 6 6.2865 0.3603 -6.0352 15 7 6.5131 0.8017 -4.8161 16 14 7.7144 0.0735 -7.2049 17 1 7.1967 -0.4201 -8.5064 18 1 8.4459 1.3486 -7.4152 19 1 8.6358 -0.9356 -6.6234 20 6 0.1786 -0.0298 -5.3083 21 6 -0.8297 1.0977 -5.5381 22 6 -0.9452 0.2082 -4.2977 23 6 2.0399 -0.7213 1.2493 24 6 2.7419 0.1225 2.3152 25 6 3.5550 -0.8282 1.4344 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6053 -1.7199 -1.2951 30 1 3.1263 -0.7995 -1.2056 31 1 2.4891 -1.2153 -3.7907 32 1 2.4732 -0.9974 -6.3137 33 1 2.3338 0.6799 -6.8930 34 1 4.1070 0.6422 -4.6953 35 1 7.4215 0.9777 -4.5249 36 1 0.1033 -0.9101 -5.9467 37 1 -0.4825 2.1207 -5.3932 38 1 -1.5686 0.9591 -6.3274 39 1 -1.7600 -0.5152 -4.2713 40 1 -0.6737 0.6455 -3.3369 41 1 1.4310 -1.5585 1.5902 42 1 2.8401 1.1916 2.1266 43 1 2.5947 -0.1593 3.3577 44 1 3.9427 -1.7355 1.8974 45 1 4.1883 -0.3846 0.6661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716631801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:05 Heat of formation + Delta-G solvation = -9.334632 kcal Electronic energy + Delta-G solvation = -22550.273804 eV Core-core repulsion = 19375.346387 eV Total energy + Delta-G solvation = -3174.927417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18630 -39.14903 -38.08575 -36.61201 -34.92980 -34.00145 -32.97733 -30.11106 -28.35263 -25.90988 -24.43528 -23.32225 -23.14313 -23.03821 -21.80049 -21.21296 -20.50234 -19.24261 -17.94824 -17.27159 -16.84113 -16.66763 -16.28697 -15.88522 -15.60006 -15.36870 -15.02920 -14.81711 -14.41897 -14.19565 -13.90126 -13.57487 -13.19450 -13.00567 -12.82474 -12.63107 -12.45300 -12.40805 -12.32370 -12.16237 -12.04548 -12.00704 -11.84482 -11.73018 -11.21272 -11.08493 -11.04233 -10.99727 -10.83878 -10.46906 -9.84435 -9.02144 -7.95203 -5.24834 1.48050 1.48963 1.58787 1.77558 2.24717 2.55598 2.92649 3.07435 3.39422 3.60051 3.71374 3.87610 3.97510 4.03180 4.11869 4.14865 4.19232 4.26568 4.32983 4.41156 4.48967 4.58515 4.64675 4.67241 4.77682 4.83458 4.84105 4.90910 4.93100 5.05511 5.06661 5.13036 5.19849 5.24389 5.30231 5.31058 5.38262 5.48273 5.50128 5.58468 5.68896 6.25663 6.70482 7.33117 7.40572 8.05996 8.30465 9.28087 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.005150 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.383948 B = 5435.893684 C = 7464.464749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 H 0.049 0.951 4 C -0.129 4.129 5 C 0.512 3.488 6 O -0.571 6.571 7 N -0.708 5.708 8 C 0.179 3.821 9 H 0.055 0.945 10 C 0.150 3.850 11 N -0.742 5.742 12 C -0.244 4.244 13 H 0.079 0.921 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.973 3.027 17 H -0.265 1.265 18 H -0.297 1.297 19 H -0.292 1.292 20 C -0.164 4.164 21 C -0.168 4.168 22 C -0.179 4.179 23 C -0.144 4.144 24 C -0.180 4.180 25 C -0.187 4.187 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.407 0.593 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 -6.604 9.212 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 H 0.068 0.932 4 C -0.169 4.169 5 C 0.301 3.699 6 O -0.452 6.452 7 N -0.358 5.358 8 C 0.074 3.926 9 H 0.073 0.927 10 C 0.023 3.977 11 N -0.386 5.386 12 C -0.375 4.375 13 H 0.096 0.904 14 C -0.265 4.265 15 N -0.619 5.619 16 Si 0.802 3.198 17 H -0.189 1.189 18 H -0.225 1.225 19 H -0.219 1.219 20 C -0.184 4.184 21 C -0.206 4.206 22 C -0.216 4.216 23 C -0.162 4.162 24 C -0.217 4.217 25 C -0.224 4.224 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.242 0.758 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.305 -5.934 9.094 17.960 hybrid contribution 1.527 0.067 -0.397 1.579 sum -12.778 -5.867 8.698 16.534 Atomic orbital electron populations 1.21834 0.93976 1.02037 1.02057 1.20362 0.96641 0.97592 0.91280 0.93199 1.21738 1.03223 1.00767 0.91165 1.21114 0.78154 0.85373 0.85301 1.90552 1.41475 1.26161 1.86984 1.45991 1.56725 1.27818 1.05259 1.20485 0.92206 0.95203 0.84720 0.92721 1.21030 0.83439 0.98609 0.94596 1.42517 1.01195 1.80078 1.14763 1.19670 0.86727 1.35607 0.95541 0.90354 1.25539 0.99967 1.02725 0.98240 1.69836 1.19899 1.53341 1.18832 0.85088 0.79438 0.76675 0.78614 1.18911 1.22487 1.21916 1.22548 0.89696 1.01656 1.04490 1.22969 1.01800 0.95178 1.00610 1.23225 0.99851 1.03172 0.95317 1.22362 0.94793 1.02138 0.96863 1.23058 1.04462 0.97239 0.96920 1.22996 0.93885 1.02306 1.03181 0.91739 0.92529 0.92712 0.86621 0.89035 0.75767 0.94222 0.94910 0.79367 0.94101 0.86308 0.90259 0.86791 0.87855 0.88399 0.86106 0.89866 0.87304 0.87454 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.92 71.98 0.64 -2.53 16 2 C -0.04 -0.95 2.19 -10.79 -0.02 -0.97 16 3 H 0.05 1.46 7.72 -2.39 -0.02 1.45 16 4 C -0.13 -3.17 5.09 29.85 0.15 -3.02 16 5 C 0.51 16.08 6.89 87.66 0.60 16.68 16 6 O -0.57 -20.93 10.97 -3.01 -0.03 -20.96 16 7 N -0.71 -22.31 4.50 -442.55 -1.99 -24.30 16 8 C 0.18 6.06 2.43 44.99 0.11 6.17 16 9 H 0.05 2.20 7.34 -2.39 -0.02 2.18 16 10 C 0.15 5.79 5.80 86.38 0.50 6.29 16 11 N -0.74 -36.85 5.43 -343.47 -1.87 -38.71 16 12 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 13 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 14 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 15 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 16 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 20 C -0.16 -4.46 5.36 -10.80 -0.06 -4.52 16 21 C -0.17 -4.25 10.18 30.62 0.31 -3.94 16 22 C -0.18 -4.64 9.74 30.62 0.30 -4.34 16 23 C -0.14 -2.76 5.15 -10.79 -0.06 -2.82 16 24 C -0.18 -3.42 10.18 30.59 0.31 -3.11 16 25 C -0.19 -3.75 9.67 30.59 0.30 -3.45 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.50 5.94 -2.39 -0.01 1.48 16 29 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.35 7.12 -2.39 -0.02 2.33 16 31 H 0.41 12.13 8.60 -92.71 -0.80 11.33 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.37 20.15 7.33 -92.71 -0.68 19.47 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.12 2.86 8.11 -2.39 -0.02 2.84 16 37 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 38 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.10 3.04 5.01 -2.39 -0.01 3.03 16 41 H 0.12 1.91 8.11 -2.39 -0.02 1.89 16 42 H 0.08 1.75 8.05 -2.38 -0.02 1.73 16 43 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 1.90 7.58 -2.39 -0.02 1.88 16 Total: -1.00 -65.05 360.30 2.31 -62.73 By element: Atomic # 1 Polarization: 48.36 SS G_CDS: -0.50 Total: 47.86 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 4.39 Total: -15.66 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -3.57 Total: -121.56 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.03 Total: -20.96 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -65.05 2.31 -62.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.397 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds