Wall clock time and date at job start Tue Mar 31 2020 02:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 O 1.21283 * 120.00019 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00071 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00359 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.46806 * 325.00601 * 8 7 5 10 10 C 1.52996 * 109.47680 * 205.00419 * 8 7 5 11 11 N 1.46507 * 109.47175 * 54.99685 * 10 8 7 12 12 C 1.36934 * 119.99878 * 180.02562 * 11 10 8 13 13 H 1.07991 * 120.00145 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99520 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99975 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47152 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47115 * 120.00042 * 16 14 12 19 19 H 1.48504 * 109.46917 * 240.00279 * 16 14 12 20 20 C 1.53000 * 109.47365 * 84.99960 * 8 7 5 21 21 C 1.53001 * 117.49730 * 8.74924 * 20 8 7 22 22 C 1.53002 * 117.49854 * 300.09325 * 20 8 7 23 23 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 24 24 C 1.52996 * 117.50276 * 248.62252 * 23 2 1 25 25 C 1.52993 * 60.00427 * 252.50569 * 24 23 2 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 30 30 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 31 31 H 0.97006 * 119.99703 * 0.02562 * 7 5 4 32 32 H 1.08997 * 109.47476 * 174.99700 * 10 8 7 33 33 H 1.09004 * 109.46735 * 295.00471 * 10 8 7 34 34 H 0.97001 * 119.99692 * 0.02562 * 11 10 8 35 35 H 0.96998 * 119.99831 * 180.02562 * 15 14 12 36 36 H 1.08998 * 115.55437 * 154.41505 * 20 8 7 37 37 H 1.09001 * 117.49703 * 0.02562 * 21 20 8 38 38 H 1.09001 * 117.49890 * 145.01683 * 21 20 8 39 39 H 1.09006 * 117.49808 * 214.97371 * 22 20 8 40 40 H 1.08993 * 117.49827 * 359.97438 * 22 20 8 41 41 H 1.09007 * 115.55057 * 34.33123 * 23 2 1 42 42 H 1.09003 * 117.49933 * 359.97438 * 24 23 2 43 43 H 1.09000 * 117.50148 * 145.01863 * 24 23 2 44 44 H 1.08997 * 117.50357 * 252.51377 * 25 24 23 45 45 H 1.08997 * 117.49776 * 107.48026 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3912 -3.7002 8 6 1.5982 0.3657 -4.8932 9 1 0.6219 0.8232 -4.7323 10 6 1.5271 -0.5781 -6.0953 11 7 0.6235 -1.6903 -5.7903 12 6 0.4019 -2.6679 -6.7232 13 1 0.8928 -2.6189 -7.6838 14 6 -0.4540 -3.7219 -6.4339 15 7 -1.0527 -3.7812 -5.2633 16 14 -0.7569 -5.0552 -7.7067 17 1 0.0279 -4.7576 -8.9317 18 1 -0.3375 -6.3692 -7.1565 19 1 -2.2026 -5.0983 -8.0439 20 6 2.6350 1.4580 -5.1630 21 6 3.9184 1.4348 -4.3304 22 6 2.8568 2.5066 -4.0711 23 6 2.0400 -0.7212 1.2491 24 6 2.7419 0.1225 2.3150 25 6 3.5551 -0.8281 1.4342 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 2.4892 -1.2151 -3.7908 32 1 1.1538 -0.0341 -6.9629 33 1 2.5223 -0.9673 -6.3109 34 1 0.1822 -1.7340 -4.9276 35 1 -1.6504 -4.5179 -5.0611 36 1 2.7133 1.7862 -6.1994 37 1 4.0243 0.6412 -3.5909 38 1 4.8410 1.7482 -4.8191 39 1 3.0814 3.5247 -4.3893 40 1 2.2638 2.4185 -3.1609 41 1 1.4311 -1.5586 1.5901 42 1 2.8408 1.1915 2.1262 43 1 2.5948 -0.1594 3.3576 44 1 3.9428 -1.7355 1.8972 45 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716631802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:10 Heat of formation + Delta-G solvation = 12.237868 kcal Electronic energy + Delta-G solvation = -22669.111014 eV Core-core repulsion = 19495.119051 eV Total energy + Delta-G solvation = -3173.991963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10510 -38.21807 -36.90543 -34.88193 -33.23003 -33.01469 -31.17497 -28.68455 -27.12143 -24.10065 -23.44453 -22.45426 -22.22322 -21.48029 -20.77335 -19.58630 -19.51400 -17.31661 -16.70632 -16.17174 -15.75586 -15.46730 -14.82376 -14.54220 -14.45246 -13.96448 -13.47366 -13.27336 -13.06050 -12.89183 -12.72494 -12.20440 -11.79389 -11.68308 -11.63004 -11.37157 -11.29099 -11.18899 -11.07272 -10.89426 -10.83771 -10.71857 -10.26231 -10.19825 -10.05306 -10.00582 -9.79918 -9.56078 -9.32886 -8.92916 -8.54893 -6.97088 -5.79735 -3.09244 2.97747 3.40936 3.46829 3.47965 3.49187 3.75458 4.09008 4.54515 4.58335 4.79681 4.84119 4.92855 5.02313 5.16804 5.20415 5.22891 5.29595 5.47990 5.52990 5.53297 5.56575 5.64993 5.76579 5.80790 5.83136 5.85683 5.91528 6.00017 6.03851 6.04705 6.11676 6.20096 6.24619 6.33734 6.43804 6.49897 6.53085 6.63313 6.73295 7.00391 7.67427 7.92672 8.38278 8.61895 9.50317 10.06247 10.41903 11.42710 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.004682 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.165339 B = 5978.994190 C = 7285.358733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.516 3.484 6 O -0.543 6.543 7 N -0.710 5.710 8 C 0.168 3.832 9 H 0.090 0.910 10 C 0.148 3.852 11 N -0.731 5.731 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.187 4.187 23 C -0.146 4.146 24 C -0.180 4.180 25 C -0.183 4.183 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.404 0.596 32 H 0.033 0.967 33 H 0.025 0.975 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.180 8.533 11.050 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.059 4.059 3 H 0.094 0.906 4 C -0.178 4.178 5 C 0.303 3.697 6 O -0.422 6.422 7 N -0.360 5.360 8 C 0.063 3.937 9 H 0.108 0.892 10 C 0.020 3.980 11 N -0.376 5.376 12 C -0.373 4.373 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.180 4.180 21 C -0.215 4.215 22 C -0.224 4.224 23 C -0.164 4.164 24 C -0.217 4.217 25 C -0.220 4.220 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.239 0.761 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.728 9.163 10.954 17.280 hybrid contribution -0.037 -1.307 -0.543 1.416 sum 9.691 7.857 10.411 16.249 Atomic orbital electron populations 1.21922 0.94156 1.01803 1.02902 1.20411 0.96639 0.98426 0.90391 0.90648 1.21743 1.02496 1.00898 0.92619 1.20593 0.78820 0.85527 0.84761 1.90569 1.40107 1.24817 1.86659 1.46027 1.57170 1.27406 1.05428 1.20711 0.97041 0.90845 0.85097 0.89229 1.20907 0.94438 0.89156 0.93527 1.42351 1.53081 1.24176 1.18008 1.19261 1.21891 1.00397 0.95717 0.91109 1.24739 0.99881 0.99081 0.97088 1.69675 1.33819 1.33065 1.21363 0.86127 0.77613 0.81886 0.80603 1.20559 1.21880 1.21864 1.22700 0.98302 1.00089 0.96874 1.22871 0.92718 1.02243 1.03638 1.23337 1.02969 0.93948 1.02125 1.22434 0.94528 1.01820 0.97647 1.22987 1.04960 0.97610 0.96174 1.22942 0.94202 1.01649 1.03199 0.93219 0.93085 0.90272 0.89378 0.88514 0.76104 0.94972 0.95681 0.77991 0.93550 0.87455 0.89062 0.89660 0.89917 0.86448 0.87772 0.88896 0.89123 0.88979 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.92 37.16 0.33 -1.67 16 2 C -0.04 -0.48 2.19 -90.62 -0.20 -0.67 16 3 H 0.08 0.97 7.71 -51.93 -0.40 0.56 16 4 C -0.14 -1.70 5.09 -27.88 -0.14 -1.84 16 5 C 0.52 7.87 6.38 -10.99 -0.07 7.80 16 6 O -0.54 -9.55 10.99 5.56 0.06 -9.49 16 7 N -0.71 -10.96 3.05 -53.81 -0.16 -11.12 16 8 C 0.17 2.81 2.59 -67.94 -0.18 2.64 16 9 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 10 C 0.15 2.87 5.80 -4.04 -0.02 2.84 16 11 N -0.73 -17.92 5.43 -59.91 -0.33 -18.25 16 12 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 13 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 16 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 C -0.16 -2.28 5.71 -90.62 -0.52 -2.80 16 21 C -0.18 -2.27 9.74 -26.70 -0.26 -2.53 16 22 C -0.19 -2.59 9.82 -26.69 -0.26 -2.85 16 23 C -0.15 -1.49 5.15 -90.62 -0.47 -1.95 16 24 C -0.18 -1.63 10.18 -26.74 -0.27 -1.90 16 25 C -0.18 -1.65 9.67 -26.73 -0.26 -1.91 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.26 5.95 -51.93 -0.31 0.95 16 29 H 0.09 0.92 7.13 -51.93 -0.37 0.55 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 6.03 8.60 -40.82 -0.35 5.68 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.39 10.07 7.33 -40.82 -0.30 9.77 16 35 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 37 H 0.09 1.17 6.67 -51.93 -0.35 0.82 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.12 1.86 5.01 -51.93 -0.26 1.60 16 41 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 42 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.83 7.58 -51.93 -0.39 0.43 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -30.00 357.41 -9.64 -39.64 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -7.74 Total: 15.78 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.56 Total: -12.04 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.23 Total: -56.38 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.06 Total: -9.49 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.00 -9.64 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.882 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds