Wall clock time and date at job start Tue Mar 31 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 O 1.21283 * 120.00019 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00071 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00359 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.46806 * 325.00601 * 8 7 5 10 10 C 1.52996 * 109.47680 * 205.00419 * 8 7 5 11 11 N 1.46507 * 109.47175 * 54.99685 * 10 8 7 12 12 C 1.36934 * 119.99878 * 180.02562 * 11 10 8 13 13 H 1.07991 * 120.00145 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99520 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99975 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47152 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47115 * 120.00042 * 16 14 12 19 19 H 1.48504 * 109.46917 * 240.00279 * 16 14 12 20 20 C 1.53000 * 109.47365 * 84.99960 * 8 7 5 21 21 C 1.53001 * 117.49730 * 8.74924 * 20 8 7 22 22 C 1.53002 * 117.49854 * 300.09325 * 20 8 7 23 23 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 24 24 C 1.52996 * 117.50276 * 248.62252 * 23 2 1 25 25 C 1.52993 * 60.00427 * 252.50569 * 24 23 2 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 30 30 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 31 31 H 0.97006 * 119.99703 * 0.02562 * 7 5 4 32 32 H 1.08997 * 109.47476 * 174.99700 * 10 8 7 33 33 H 1.09004 * 109.46735 * 295.00471 * 10 8 7 34 34 H 0.97001 * 119.99692 * 0.02562 * 11 10 8 35 35 H 0.96998 * 119.99831 * 180.02562 * 15 14 12 36 36 H 1.08998 * 115.55437 * 154.41505 * 20 8 7 37 37 H 1.09001 * 117.49703 * 0.02562 * 21 20 8 38 38 H 1.09001 * 117.49890 * 145.01683 * 21 20 8 39 39 H 1.09006 * 117.49808 * 214.97371 * 22 20 8 40 40 H 1.08993 * 117.49827 * 359.97438 * 22 20 8 41 41 H 1.09007 * 115.55057 * 34.33123 * 23 2 1 42 42 H 1.09003 * 117.49933 * 359.97438 * 24 23 2 43 43 H 1.09000 * 117.50148 * 145.01863 * 24 23 2 44 44 H 1.08997 * 117.50357 * 252.51377 * 25 24 23 45 45 H 1.08997 * 117.49776 * 107.48026 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3912 -3.7002 8 6 1.5982 0.3657 -4.8932 9 1 0.6219 0.8232 -4.7323 10 6 1.5271 -0.5781 -6.0953 11 7 0.6235 -1.6903 -5.7903 12 6 0.4019 -2.6679 -6.7232 13 1 0.8928 -2.6189 -7.6838 14 6 -0.4540 -3.7219 -6.4339 15 7 -1.0527 -3.7812 -5.2633 16 14 -0.7569 -5.0552 -7.7067 17 1 0.0279 -4.7576 -8.9317 18 1 -0.3375 -6.3692 -7.1565 19 1 -2.2026 -5.0983 -8.0439 20 6 2.6350 1.4580 -5.1630 21 6 3.9184 1.4348 -4.3304 22 6 2.8568 2.5066 -4.0711 23 6 2.0400 -0.7212 1.2491 24 6 2.7419 0.1225 2.3150 25 6 3.5551 -0.8281 1.4342 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 2.4892 -1.2151 -3.7908 32 1 1.1538 -0.0341 -6.9629 33 1 2.5223 -0.9673 -6.3109 34 1 0.1822 -1.7340 -4.9276 35 1 -1.6504 -4.5179 -5.0611 36 1 2.7133 1.7862 -6.1994 37 1 4.0243 0.6412 -3.5909 38 1 4.8410 1.7482 -4.8191 39 1 3.0814 3.5247 -4.3893 40 1 2.2638 2.4185 -3.1609 41 1 1.4311 -1.5586 1.5901 42 1 2.8408 1.1915 2.1262 43 1 2.5948 -0.1594 3.3576 44 1 3.9428 -1.7355 1.8972 45 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716631802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:08 Heat of formation + Delta-G solvation = -4.249133 kcal Electronic energy + Delta-G solvation = -22669.825944 eV Core-core repulsion = 19495.119051 eV Total energy + Delta-G solvation = -3174.706893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.33240 -39.18754 -38.03591 -36.53997 -34.74760 -34.00418 -33.00504 -30.19952 -28.39642 -25.93767 -24.46319 -23.44280 -23.16735 -22.95026 -21.87589 -20.83989 -20.50824 -19.23614 -17.94686 -17.36304 -17.10360 -16.57408 -16.32938 -15.74627 -15.56832 -15.28854 -15.06421 -14.76354 -14.56880 -14.11480 -13.79959 -13.66013 -13.13388 -12.94035 -12.81871 -12.73244 -12.64638 -12.40991 -12.30224 -12.18636 -12.07779 -12.04274 -11.83031 -11.69822 -11.23454 -11.06012 -10.99582 -10.84936 -10.79166 -10.51755 -9.84219 -9.00846 -7.94289 -5.23650 1.48443 1.49396 1.59103 1.75473 2.29981 2.56021 2.95001 2.99658 3.40364 3.62547 3.71434 3.88275 3.98582 4.04637 4.11210 4.14034 4.19530 4.23015 4.37115 4.45947 4.51543 4.56863 4.65282 4.67335 4.76433 4.85097 4.85600 4.90402 4.93651 5.05147 5.07669 5.15309 5.19638 5.23404 5.28562 5.32892 5.39431 5.43406 5.51007 5.53766 5.69189 6.26691 6.68205 7.34236 7.38937 8.07352 8.31839 9.28962 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.004682 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.165339 B = 5978.994190 C = 7285.358733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.033 4.033 3 H 0.067 0.933 4 C -0.131 4.131 5 C 0.511 3.489 6 O -0.568 6.568 7 N -0.708 5.708 8 C 0.179 3.821 9 H 0.058 0.942 10 C 0.151 3.849 11 N -0.742 5.742 12 C -0.244 4.244 13 H 0.078 0.922 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.972 3.028 17 H -0.265 1.265 18 H -0.292 1.292 19 H -0.297 1.297 20 C -0.169 4.169 21 C -0.159 4.159 22 C -0.189 4.189 23 C -0.157 4.157 24 C -0.177 4.177 25 C -0.175 4.175 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.408 0.592 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 8.459 11.019 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 H 0.085 0.915 4 C -0.170 4.170 5 C 0.300 3.700 6 O -0.448 6.448 7 N -0.359 5.359 8 C 0.074 3.926 9 H 0.076 0.924 10 C 0.024 3.976 11 N -0.385 5.385 12 C -0.375 4.375 13 H 0.096 0.904 14 C -0.264 4.264 15 N -0.618 5.618 16 Si 0.801 3.199 17 H -0.190 1.190 18 H -0.220 1.220 19 H -0.225 1.225 20 C -0.189 4.189 21 C -0.196 4.196 22 C -0.226 4.226 23 C -0.175 4.175 24 C -0.213 4.213 25 C -0.212 4.212 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.243 0.757 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.863 9.112 10.901 18.509 hybrid contribution -0.693 -1.201 -0.536 1.487 sum 11.169 7.911 10.366 17.169 Atomic orbital electron populations 1.21865 0.95540 1.01247 1.01860 1.20307 0.95408 0.98196 0.91249 0.91506 1.21759 1.04032 1.00033 0.91194 1.21126 0.78187 0.85366 0.85345 1.90568 1.41129 1.26131 1.87006 1.45999 1.57164 1.27457 1.05247 1.20410 0.96719 0.90898 0.84602 0.92412 1.21017 0.93745 0.88164 0.94701 1.42516 1.53820 1.25070 1.17119 1.19660 1.21003 1.00630 0.96226 0.90417 1.25522 1.00377 1.01539 0.98972 1.69830 1.34915 1.33770 1.23308 0.85099 0.76994 0.78993 0.78803 1.18968 1.21953 1.22495 1.22612 0.98766 0.99653 0.97825 1.22955 0.92715 1.01326 1.02646 1.23274 1.03370 0.94996 1.00939 1.22308 0.95640 1.02284 0.97290 1.23061 1.04162 0.97564 0.96555 1.23024 0.93062 1.02053 1.03071 0.92169 0.93344 0.93324 0.86836 0.88763 0.75676 0.94890 0.94299 0.79313 0.94110 0.86194 0.89047 0.87417 0.88292 0.88640 0.87693 0.88986 0.87924 0.87819 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.92 71.98 0.64 -3.40 16 2 C -0.03 -0.77 2.19 -10.79 -0.02 -0.79 16 3 H 0.07 1.69 7.71 -2.39 -0.02 1.68 16 4 C -0.13 -3.15 5.09 29.85 0.15 -3.00 16 5 C 0.51 15.77 6.38 87.66 0.56 16.33 16 6 O -0.57 -20.68 10.99 -3.04 -0.03 -20.72 16 7 N -0.71 -21.84 3.05 -442.55 -1.35 -23.19 16 8 C 0.18 6.01 2.59 44.99 0.12 6.13 16 9 H 0.06 2.31 7.58 -2.38 -0.02 2.29 16 10 C 0.15 5.77 5.80 86.38 0.50 6.27 16 11 N -0.74 -36.59 5.43 -343.45 -1.87 -38.46 16 12 C -0.24 -13.25 9.99 84.04 0.84 -12.41 16 13 H 0.08 4.05 7.83 -2.92 -0.02 4.02 16 14 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 15 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 16 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 C -0.17 -4.60 5.71 -10.79 -0.06 -4.66 16 21 C -0.16 -3.69 9.74 30.62 0.30 -3.39 16 22 C -0.19 -4.99 9.82 30.62 0.30 -4.69 16 23 C -0.16 -2.97 5.15 -10.80 -0.06 -3.03 16 24 C -0.18 -2.85 10.18 30.59 0.31 -2.54 16 25 C -0.18 -2.74 9.67 30.59 0.30 -2.45 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.62 5.95 -2.38 -0.01 1.61 16 29 H 0.11 2.14 7.13 -2.38 -0.02 2.13 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.41 11.96 8.60 -92.70 -0.80 11.16 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.37 20.01 7.33 -92.71 -0.68 19.33 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 37 H 0.09 2.12 6.67 -2.39 -0.02 2.11 16 38 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.10 3.02 5.01 -2.39 -0.01 3.01 16 41 H 0.10 1.99 8.11 -2.38 -0.02 1.97 16 42 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 45 H 0.10 1.46 7.58 -2.39 -0.02 1.44 16 Total: -1.00 -64.52 357.41 2.90 -61.61 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: -0.50 Total: 46.71 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.34 Total: -15.19 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -2.94 Total: -119.91 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.03 Total: -20.72 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -64.52 2.90 -61.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716631802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.365 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds