Wall clock time and date at job start Tue Mar 31 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46818 * 2 1 4 4 C 1.53000 * 109.47206 * 240.00035 * 2 1 3 5 5 N 1.46499 * 109.47197 * 185.00094 * 4 2 1 6 6 C 1.34769 * 120.00261 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99650 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00497 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.23346 * 60.51249 * 8 6 5 10 10 C 1.51395 * 109.26185 * 301.04064 * 8 6 5 11 11 C 1.50042 * 117.51217 * 165.81961 * 10 8 6 12 12 C 1.50518 * 112.73504 * 79.79423 * 11 10 8 13 13 C 1.31667 * 116.92347 * 275.28531 * 12 11 10 14 14 C 1.50797 * 118.08704 * 0.52756 * 13 12 11 15 15 C 1.52711 * 108.95884 * 104.85625 * 14 13 12 16 16 C 1.53854 * 109.27031 * 179.97438 * 8 6 5 17 17 N 1.46499 * 109.47097 * 119.99827 * 2 1 3 18 18 C 1.36937 * 119.99836 * 275.00316 * 17 2 1 19 19 H 1.07994 * 120.00477 * 359.97438 * 18 17 2 20 20 C 1.38819 * 119.99819 * 180.02562 * 18 17 2 21 21 N 1.31616 * 119.99880 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99859 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47071 * 89.99746 * 22 20 18 24 24 H 1.48498 * 109.46884 * 209.99850 * 22 20 18 25 25 H 1.48501 * 109.47291 * 329.99832 * 22 20 18 26 26 H 1.09004 * 109.46924 * 59.99980 * 1 2 3 27 27 H 1.08997 * 109.46818 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47303 * 300.00400 * 1 2 3 29 29 H 1.08992 * 109.46980 * 64.99824 * 4 2 1 30 30 H 1.09000 * 109.46809 * 305.00052 * 4 2 1 31 31 H 0.97003 * 119.99524 * 0.02562 * 5 4 2 32 32 H 1.09002 * 107.83604 * 287.95261 * 10 8 6 33 33 H 1.09000 * 107.83880 * 43.88836 * 10 8 6 34 34 H 1.08999 * 108.84579 * 319.02012 * 11 10 8 35 35 H 1.09000 * 109.01089 * 200.67505 * 11 10 8 36 36 H 1.08002 * 121.54113 * 95.56433 * 12 11 10 37 37 H 1.08001 * 120.95447 * 180.54339 * 13 12 11 38 38 H 1.09001 * 109.55702 * 224.70203 * 14 13 12 39 39 H 1.08999 * 109.55608 * 344.90884 * 14 13 12 40 40 H 1.09004 * 109.62086 * 61.90738 * 15 14 13 41 41 H 1.09000 * 109.62425 * 182.45944 * 15 14 13 42 42 H 1.09005 * 109.80051 * 106.58400 * 16 8 6 43 43 H 1.08996 * 109.80035 * 345.71553 * 16 8 6 44 44 H 0.97001 * 119.99959 * 94.99902 * 17 2 1 45 45 H 0.96998 * 120.00059 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4291 -2.1906 7 8 3.5698 -1.8849 -3.1389 8 6 5.6749 -1.5378 -2.1300 9 1 5.9582 -2.1090 -1.2459 10 6 6.2729 -0.1499 -2.0407 11 6 7.7164 -0.0412 -1.6461 12 6 8.6546 -0.3166 -2.7904 13 6 8.9504 -1.5773 -3.0286 14 6 8.3222 -2.6318 -2.1526 15 6 7.2118 -3.3297 -2.9349 16 6 6.1825 -2.2646 -3.3875 17 7 2.0183 -0.6906 1.1962 18 6 2.1490 -0.0074 2.3757 19 1 1.8926 1.0405 2.4242 20 6 2.6123 -0.6616 3.5091 21 7 2.9253 -1.9386 3.4500 22 14 2.7912 0.2705 5.1180 23 1 1.5238 0.1794 5.8865 24 1 3.8962 -0.3226 5.9133 25 1 3.0960 1.6957 4.8332 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.7517 -0.1583 -2.1369 30 1 1.6054 -1.7198 -1.2951 31 1 3.9823 -0.4628 -0.4315 32 1 6.1542 0.3280 -3.0131 33 1 5.6872 0.4203 -1.3195 34 1 7.9179 -0.7554 -0.8477 35 1 7.9071 0.9641 -1.2705 36 1 9.0696 0.4832 -3.3858 37 1 9.6239 -1.8484 -3.8283 38 1 9.0776 -3.3616 -1.8613 39 1 7.9041 -2.1639 -1.2613 40 1 7.6352 -3.8244 -3.8091 41 1 6.7210 -4.0647 -2.2970 42 1 6.6608 -1.5511 -4.0586 43 1 5.3488 -2.7491 -3.8957 44 1 2.2490 -1.6317 1.1527 45 1 3.2487 -2.3959 4.2420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265791105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:16 Heat of formation + Delta-G solvation = -43.024787 kcal Electronic energy + Delta-G solvation = -22708.014949 eV Core-core repulsion = 19531.626618 eV Total energy + Delta-G solvation = -3176.388331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31638 -39.25745 -37.86776 -35.24340 -34.25064 -33.95503 -33.30725 -30.56323 -28.31811 -27.47477 -26.26449 -25.52065 -23.17819 -22.12711 -21.71852 -20.72125 -19.36003 -18.86580 -18.34872 -17.14805 -16.83190 -16.39853 -16.21886 -15.92836 -15.55297 -15.36208 -14.84310 -14.72595 -14.48849 -13.91163 -13.86528 -13.68897 -13.60713 -13.29276 -13.07254 -12.84118 -12.78506 -12.49481 -12.33881 -12.18343 -12.14341 -11.74294 -11.70914 -11.67912 -11.62637 -11.29510 -10.99263 -10.90135 -10.74317 -9.99889 -9.71410 -9.01883 -7.90708 -5.19773 1.42009 1.50609 1.51726 1.59373 1.67341 2.31652 2.58692 3.43624 3.67291 3.68550 3.85914 3.93522 4.01296 4.11167 4.15819 4.24427 4.39752 4.42093 4.46563 4.57125 4.62967 4.66714 4.73249 4.78898 4.87182 4.87463 4.98436 5.03989 5.06076 5.14693 5.18788 5.25426 5.28765 5.33240 5.38438 5.45228 5.49683 5.57280 5.63182 5.86790 6.10416 6.29852 6.62582 7.27779 7.37407 8.09299 8.34303 9.32079 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.004621 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.466844 B = 6057.493333 C = 7067.824728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.122 3.878 5 N -0.711 5.711 6 C 0.511 3.489 7 O -0.585 6.585 8 C -0.097 4.097 9 H 0.098 0.902 10 C -0.098 4.098 11 C -0.094 4.094 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.106 4.106 17 N -0.731 5.731 18 C -0.235 4.235 19 H 0.078 0.922 20 C -0.069 4.069 21 N -0.967 5.967 22 Si 0.966 3.034 23 H -0.294 1.294 24 H -0.299 1.299 25 H -0.268 1.268 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.410 0.590 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.372 0.628 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.552 3.315 -13.058 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.078 0.922 4 C -0.002 4.002 5 N -0.362 5.362 6 C 0.299 3.701 7 O -0.467 6.467 8 C -0.118 4.118 9 H 0.116 0.884 10 C -0.136 4.136 11 C -0.130 4.130 12 C -0.184 4.184 13 C -0.172 4.172 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.143 4.143 17 N -0.372 5.372 18 C -0.366 4.366 19 H 0.096 0.904 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.796 3.204 23 H -0.221 1.221 24 H -0.226 1.226 25 H -0.193 1.193 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.246 0.754 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.204 0.796 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.100 3.180 -13.586 17.225 hybrid contribution 0.021 -0.049 1.489 1.490 sum 10.120 3.131 -12.097 16.080 Atomic orbital electron populations 1.22241 0.96863 1.01102 1.01356 1.20672 0.93550 0.95617 0.85055 0.92230 1.21558 0.80151 1.00233 0.98302 1.46032 1.07958 1.58705 1.23476 1.21132 0.91270 0.76351 0.81388 1.90603 1.71236 1.49779 1.35042 1.21224 0.89208 0.99484 1.01896 0.88356 1.20475 0.96561 0.93954 1.02622 1.20122 0.92291 1.03048 0.97579 1.23115 0.99098 0.97288 0.98937 1.23159 0.99669 0.94543 0.99837 1.21076 0.97680 0.97719 0.98472 1.21806 0.95556 0.96937 1.00343 1.22116 0.98661 0.98240 0.95326 1.42597 1.78331 1.10292 1.06016 1.19571 1.34767 0.94187 0.88113 0.90426 1.25431 1.03024 0.96666 1.01004 1.69811 1.52554 1.10151 1.29229 0.85254 0.76545 0.78267 0.80344 1.22133 1.22598 1.19273 0.90865 0.94000 0.93598 0.90311 0.93375 0.75368 0.91940 0.92125 0.90712 0.90405 0.85718 0.86090 0.90786 0.90507 0.90680 0.92301 0.90648 0.91917 0.79561 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.49 71.98 0.68 -4.46 16 2 C 0.16 5.79 3.05 44.99 0.14 5.93 16 3 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 4 C 0.12 4.12 5.23 86.38 0.45 4.57 16 5 N -0.71 -23.57 5.11 -463.08 -2.37 -25.94 16 6 C 0.51 16.89 7.14 87.66 0.63 17.51 16 7 O -0.59 -22.89 15.18 -3.04 -0.05 -22.93 16 8 C -0.10 -2.52 2.07 -11.78 -0.02 -2.54 16 9 H 0.10 2.58 6.57 -2.39 -0.02 2.56 16 10 C -0.10 -2.17 4.28 29.12 0.12 -2.05 16 11 C -0.09 -1.76 5.17 28.84 0.15 -1.61 16 12 C -0.17 -2.83 9.27 24.97 0.23 -2.59 16 13 C -0.15 -2.59 8.55 25.06 0.21 -2.37 16 14 C -0.11 -2.07 5.41 29.78 0.16 -1.90 16 15 C -0.11 -2.20 5.60 31.14 0.17 -2.03 16 16 C -0.11 -2.56 5.19 31.52 0.16 -2.40 16 17 N -0.73 -33.90 4.56 -322.94 -1.47 -35.37 16 18 C -0.23 -12.06 9.93 84.04 0.83 -11.23 16 19 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 20 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.97 -56.64 13.06 21.65 0.28 -56.35 16 22 Si 0.97 44.16 29.55 68.60 2.03 46.19 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.41 13.76 7.32 -92.71 -0.68 13.08 16 32 H 0.06 1.38 7.72 -2.39 -0.02 1.36 16 33 H 0.06 1.40 6.92 -2.39 -0.02 1.38 16 34 H 0.07 1.48 5.62 -2.39 -0.01 1.46 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.12 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.54 3.56 -2.39 -0.01 1.53 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.71 6.29 -2.38 -0.01 1.69 16 43 H 0.06 1.84 6.46 -2.39 -0.02 1.82 16 44 H 0.37 19.11 7.80 -92.71 -0.72 18.39 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -61.73 346.55 2.40 -59.33 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -0.42 Total: 43.52 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 4.39 Total: -8.44 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -3.56 Total: -117.67 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -61.73 2.40 -59.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265791105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.302 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds