Wall clock time and date at job start Tue Mar 31 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 C 1.53002 * 109.47016 * 239.99958 * 2 1 3 5 5 N 1.46496 * 109.47383 * 184.99936 * 4 2 1 6 6 C 1.34776 * 120.00526 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99395 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00419 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.26283 * 300.50697 * 8 6 5 10 10 C 1.51390 * 109.26431 * 60.00017 * 8 6 5 11 11 C 1.49506 * 117.52005 * 194.07777 * 10 8 6 12 12 C 1.50522 * 113.04378 * 280.28060 * 11 10 8 13 13 C 1.31665 * 116.92087 * 84.56429 * 12 11 10 14 14 C 1.50796 * 118.08814 * 359.73137 * 13 12 11 15 15 C 1.52720 * 108.95767 * 255.13632 * 14 13 12 16 16 C 1.53850 * 109.26650 * 181.03714 * 8 6 5 17 17 N 1.46501 * 109.47360 * 120.00070 * 2 1 3 18 18 C 1.36935 * 119.99801 * 275.00049 * 17 2 1 19 19 H 1.08003 * 120.00239 * 359.97438 * 18 17 2 20 20 C 1.38811 * 119.99745 * 180.02562 * 18 17 2 21 21 N 1.31620 * 120.00372 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99982 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99472 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00079 * 22 20 18 26 26 H 1.09003 * 109.46767 * 299.99604 * 1 2 3 27 27 H 1.08996 * 109.47708 * 59.99700 * 1 2 3 28 28 H 1.09006 * 109.47466 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46913 * 305.00037 * 4 2 1 30 30 H 1.08997 * 109.47255 * 64.99878 * 4 2 1 31 31 H 0.97003 * 119.99638 * 0.02562 * 5 4 2 32 32 H 1.09002 * 107.83797 * 316.11177 * 10 8 6 33 33 H 1.09002 * 107.83413 * 72.04160 * 10 8 6 34 34 H 1.09001 * 108.77223 * 41.19514 * 11 10 8 35 35 H 1.08995 * 108.77064 * 159.36412 * 11 10 8 36 36 H 1.07997 * 121.54073 * 264.59290 * 12 11 10 37 37 H 1.08007 * 120.95137 * 179.71156 * 13 12 11 38 38 H 1.08997 * 109.55899 * 14.98276 * 14 13 12 39 39 H 1.09000 * 109.55900 * 135.29725 * 14 13 12 40 40 H 1.08995 * 109.62085 * 177.54207 * 15 14 13 41 41 H 1.09001 * 109.62090 * 297.91105 * 15 14 13 42 42 H 1.08993 * 109.80376 * 253.41974 * 16 8 6 43 43 H 1.09009 * 109.80252 * 14.29156 * 16 8 6 44 44 H 0.97000 * 119.99781 * 94.99830 * 17 2 1 45 45 H 0.97000 * 119.99954 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1730 -1.4283 -2.1913 7 8 3.5699 -1.8825 -3.1405 8 6 5.6749 -1.5360 -2.1312 9 1 6.1052 -0.5360 -2.0762 10 6 6.0707 -2.3185 -0.8972 11 6 7.5044 -2.2666 -0.4766 12 6 8.3871 -3.1859 -1.2776 13 6 8.8432 -2.7254 -2.4236 14 6 8.4433 -1.3319 -2.8386 15 6 7.3891 -1.4254 -3.9397 16 6 6.1847 -2.2381 -3.4017 17 7 2.0184 -0.6906 1.1962 18 6 2.1491 -0.0075 2.3757 19 1 1.8926 1.0405 2.4241 20 6 2.6124 -0.6617 3.5089 21 7 2.9255 -1.9388 3.4499 22 14 2.7902 0.2700 5.1182 23 1 4.1520 0.8560 5.2030 24 1 1.7793 1.3564 5.1756 25 1 2.5806 -0.6618 6.2554 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2951 30 1 1.7516 -0.1584 -2.1370 31 1 3.9823 -0.4628 -0.4317 32 1 5.4655 -1.9585 -0.0652 33 1 5.8101 -3.3633 -1.0666 34 1 7.8668 -1.2450 -0.5910 35 1 7.5717 -2.5444 0.5752 36 1 8.6345 -4.1775 -0.9286 37 1 9.4857 -3.3283 -3.0484 38 1 8.0296 -0.8005 -1.9816 39 1 9.3164 -0.7982 -3.2140 40 1 7.0602 -0.4241 -4.2175 41 1 7.8126 -1.9263 -4.8102 42 1 6.5018 -3.2527 -3.1609 43 1 5.3936 -2.2657 -4.1511 44 1 2.2490 -1.6318 1.1525 45 1 2.8321 -2.4229 2.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265791106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:25 Heat of formation + Delta-G solvation = -25.584726 kcal Electronic energy + Delta-G solvation = -22837.204386 eV Core-core repulsion = 19661.572313 eV Total energy + Delta-G solvation = -3175.632074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17324 -38.23183 -36.44323 -33.84069 -33.21643 -32.99891 -31.81496 -28.48685 -27.33344 -26.45067 -25.07808 -23.47696 -22.16994 -21.17681 -20.37826 -19.56628 -18.06336 -17.59397 -17.20543 -15.85022 -15.60584 -15.19784 -15.02135 -14.61158 -14.25563 -13.89280 -13.76952 -13.61264 -13.40046 -12.93214 -12.63499 -12.30890 -12.19660 -12.03714 -11.94385 -11.45454 -11.36306 -11.23256 -10.88087 -10.80788 -10.75940 -10.59461 -10.34005 -10.30566 -10.06072 -10.02295 -9.53071 -9.23910 -9.01681 -8.92484 -8.66883 -7.13729 -6.16450 -3.18304 2.18627 2.91563 3.47250 3.50973 3.55760 3.65731 4.57925 4.60544 4.71037 4.92532 4.96053 5.00497 5.09398 5.26576 5.35917 5.37298 5.43099 5.43601 5.53259 5.54060 5.63003 5.76952 5.82880 5.84655 5.87097 5.98159 6.02285 6.09600 6.14832 6.17848 6.23990 6.26386 6.33573 6.41279 6.42926 6.64607 6.67473 6.78133 6.85725 6.96752 7.74788 7.90317 8.54683 8.68559 9.13528 10.00186 10.15094 11.31130 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.004882 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.987516 B = 5733.624717 C = 7072.478389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.165 3.835 3 H 0.054 0.946 4 C 0.113 3.887 5 N -0.714 5.714 6 C 0.513 3.487 7 O -0.553 6.553 8 C -0.101 4.101 9 H 0.094 0.906 10 C -0.109 4.109 11 C -0.093 4.093 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.111 4.111 15 C -0.112 4.112 16 C -0.112 4.112 17 N -0.734 5.734 18 C -0.334 4.334 19 H 0.065 0.935 20 C -0.041 4.041 21 N -0.941 5.941 22 Si 1.081 2.919 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.288 1.288 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.409 0.591 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 1.559 -11.996 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.072 0.928 4 C -0.011 4.011 5 N -0.365 5.365 6 C 0.299 3.701 7 O -0.432 6.432 8 C -0.122 4.122 9 H 0.112 0.888 10 C -0.147 4.147 11 C -0.130 4.130 12 C -0.174 4.174 13 C -0.177 4.177 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.150 4.150 17 N -0.378 5.378 18 C -0.465 4.465 19 H 0.083 0.917 20 C -0.239 4.239 21 N -0.586 5.586 22 Si 0.912 3.088 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.214 1.214 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.201 0.799 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.392 1.355 -11.008 14.533 hybrid contribution -0.278 -0.045 -1.150 1.184 sum 9.114 1.310 -12.158 15.251 Atomic orbital electron populations 1.22343 0.98258 1.01177 1.00466 1.20444 0.92652 0.95707 0.85730 0.92802 1.21693 0.79837 1.00961 0.98655 1.46030 1.08100 1.58907 1.23496 1.20619 0.90037 0.77296 0.82122 1.90623 1.70227 1.48552 1.33807 1.21208 0.91945 1.01675 0.97410 0.88790 1.20452 0.96569 1.01134 0.96562 1.20027 0.93717 0.99552 0.99718 1.23052 0.98527 0.99397 0.96419 1.22997 1.00277 0.97350 0.97029 1.21074 0.98639 0.95141 0.99903 1.21845 0.95409 1.00203 0.97509 1.22199 0.97684 0.98847 0.96232 1.42476 1.79212 1.09911 1.06226 1.20049 1.42262 0.95073 0.89101 0.91699 1.25726 0.99332 0.97416 1.01464 1.70860 1.51001 1.08259 1.28514 0.83220 0.75804 0.74189 0.75615 1.22321 1.22200 1.21434 0.92277 0.94081 0.93361 0.92049 0.91828 0.75425 0.90976 0.91833 0.90701 0.90973 0.86983 0.87509 0.89842 0.91900 0.91882 0.91940 0.91148 0.89690 0.79873 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.49 37.16 0.35 -2.50 16 2 C 0.16 3.12 3.05 -67.93 -0.21 2.91 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 5 N -0.71 -11.85 5.11 -60.30 -0.31 -12.15 16 6 C 0.51 8.43 7.13 -10.99 -0.08 8.35 16 7 O -0.55 -10.69 15.19 5.55 0.08 -10.61 16 8 C -0.10 -1.32 2.07 -92.14 -0.19 -1.51 16 9 H 0.09 1.11 6.57 -51.93 -0.34 0.77 16 10 C -0.11 -1.44 4.27 -29.27 -0.13 -1.57 16 11 C -0.09 -1.08 5.13 -29.69 -0.15 -1.23 16 12 C -0.16 -1.66 9.28 -36.27 -0.34 -1.99 16 13 C -0.16 -1.56 8.55 -36.13 -0.31 -1.87 16 14 C -0.11 -1.05 5.42 -27.98 -0.15 -1.21 16 15 C -0.11 -1.12 5.60 -25.86 -0.14 -1.27 16 16 C -0.11 -1.38 5.19 -25.27 -0.13 -1.51 16 17 N -0.73 -17.05 4.56 -53.42 -0.24 -17.29 16 18 C -0.33 -8.79 9.93 -15.06 -0.15 -8.94 16 19 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 20 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 21 N -0.94 -27.83 13.70 55.49 0.76 -27.07 16 22 Si 1.08 25.00 29.92 -169.99 -5.09 19.91 16 23 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.30 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.41 6.89 7.39 -40.82 -0.30 6.59 16 32 H 0.07 1.08 6.99 -51.93 -0.36 0.72 16 33 H 0.06 0.89 7.71 -51.93 -0.40 0.49 16 34 H 0.07 0.81 5.63 -51.93 -0.29 0.52 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.11 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.08 0.83 3.56 -51.93 -0.18 0.64 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.88 6.28 -51.93 -0.33 0.56 16 43 H 0.08 1.21 6.47 -51.92 -0.34 0.88 16 44 H 0.37 9.01 6.63 -40.82 -0.27 8.74 16 45 H 0.26 7.47 6.77 -40.82 -0.28 7.20 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -30.00 344.93 -8.70 -38.71 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -7.37 Total: 14.97 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.74 Total: -11.66 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.21 Total: -56.51 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.09 Total: 19.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.00 -8.70 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265791106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.120 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds