Wall clock time and date at job start Tue Mar 31 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 C 1.53002 * 109.47016 * 239.99958 * 2 1 3 5 5 N 1.46496 * 109.47383 * 184.99936 * 4 2 1 6 6 C 1.34776 * 120.00526 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99395 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00419 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.26283 * 300.50697 * 8 6 5 10 10 C 1.51390 * 109.26431 * 60.00017 * 8 6 5 11 11 C 1.49506 * 117.52005 * 194.07777 * 10 8 6 12 12 C 1.50522 * 113.04378 * 280.28060 * 11 10 8 13 13 C 1.31665 * 116.92087 * 84.56429 * 12 11 10 14 14 C 1.50796 * 118.08814 * 359.73137 * 13 12 11 15 15 C 1.52720 * 108.95767 * 255.13632 * 14 13 12 16 16 C 1.53850 * 109.26650 * 181.03714 * 8 6 5 17 17 N 1.46501 * 109.47360 * 120.00070 * 2 1 3 18 18 C 1.36935 * 119.99801 * 275.00049 * 17 2 1 19 19 H 1.08003 * 120.00239 * 359.97438 * 18 17 2 20 20 C 1.38811 * 119.99745 * 180.02562 * 18 17 2 21 21 N 1.31620 * 120.00372 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99982 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99472 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00079 * 22 20 18 26 26 H 1.09003 * 109.46767 * 299.99604 * 1 2 3 27 27 H 1.08996 * 109.47708 * 59.99700 * 1 2 3 28 28 H 1.09006 * 109.47466 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46913 * 305.00037 * 4 2 1 30 30 H 1.08997 * 109.47255 * 64.99878 * 4 2 1 31 31 H 0.97003 * 119.99638 * 0.02562 * 5 4 2 32 32 H 1.09002 * 107.83797 * 316.11177 * 10 8 6 33 33 H 1.09002 * 107.83413 * 72.04160 * 10 8 6 34 34 H 1.09001 * 108.77223 * 41.19514 * 11 10 8 35 35 H 1.08995 * 108.77064 * 159.36412 * 11 10 8 36 36 H 1.07997 * 121.54073 * 264.59290 * 12 11 10 37 37 H 1.08007 * 120.95137 * 179.71156 * 13 12 11 38 38 H 1.08997 * 109.55899 * 14.98276 * 14 13 12 39 39 H 1.09000 * 109.55900 * 135.29725 * 14 13 12 40 40 H 1.08995 * 109.62085 * 177.54207 * 15 14 13 41 41 H 1.09001 * 109.62090 * 297.91105 * 15 14 13 42 42 H 1.08993 * 109.80376 * 253.41974 * 16 8 6 43 43 H 1.09009 * 109.80252 * 14.29156 * 16 8 6 44 44 H 0.97000 * 119.99781 * 94.99830 * 17 2 1 45 45 H 0.97000 * 119.99954 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1730 -1.4283 -2.1913 7 8 3.5699 -1.8825 -3.1405 8 6 5.6749 -1.5360 -2.1312 9 1 6.1052 -0.5360 -2.0762 10 6 6.0707 -2.3185 -0.8972 11 6 7.5044 -2.2666 -0.4766 12 6 8.3871 -3.1859 -1.2776 13 6 8.8432 -2.7254 -2.4236 14 6 8.4433 -1.3319 -2.8386 15 6 7.3891 -1.4254 -3.9397 16 6 6.1847 -2.2381 -3.4017 17 7 2.0184 -0.6906 1.1962 18 6 2.1491 -0.0075 2.3757 19 1 1.8926 1.0405 2.4241 20 6 2.6124 -0.6617 3.5089 21 7 2.9255 -1.9388 3.4499 22 14 2.7902 0.2700 5.1182 23 1 4.1520 0.8560 5.2030 24 1 1.7793 1.3564 5.1756 25 1 2.5806 -0.6618 6.2554 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7198 -1.2951 30 1 1.7516 -0.1584 -2.1370 31 1 3.9823 -0.4628 -0.4317 32 1 5.4655 -1.9585 -0.0652 33 1 5.8101 -3.3633 -1.0666 34 1 7.8668 -1.2450 -0.5910 35 1 7.5717 -2.5444 0.5752 36 1 8.6345 -4.1775 -0.9286 37 1 9.4857 -3.3283 -3.0484 38 1 8.0296 -0.8005 -1.9816 39 1 9.3164 -0.7982 -3.2140 40 1 7.0602 -0.4241 -4.2175 41 1 7.8126 -1.9263 -4.8102 42 1 6.5018 -3.2527 -3.1609 43 1 5.3936 -2.2657 -4.1511 44 1 2.2490 -1.6318 1.1525 45 1 2.8321 -2.4229 2.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265791106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:20 Heat of formation + Delta-G solvation = -43.163039 kcal Electronic energy + Delta-G solvation = -22837.966639 eV Core-core repulsion = 19661.572313 eV Total energy + Delta-G solvation = -3176.394326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.39581 -39.33649 -38.05218 -35.47221 -34.34830 -34.01681 -33.37640 -30.31275 -28.39330 -27.52752 -26.28263 -25.44423 -23.24444 -22.17330 -21.92761 -20.78360 -19.50457 -18.93886 -18.50670 -17.29543 -16.68626 -16.64274 -16.16759 -16.01630 -15.67757 -15.44007 -15.16632 -14.79574 -14.46784 -14.03808 -13.89594 -13.73087 -13.71205 -13.37282 -13.03421 -12.88014 -12.59738 -12.43485 -12.36896 -12.17975 -11.91983 -11.87118 -11.74447 -11.71083 -11.34032 -11.21980 -11.00012 -10.93293 -10.80446 -10.09432 -9.75600 -9.12728 -8.33206 -5.29139 1.37758 1.58717 1.61467 1.70696 1.84442 2.23562 2.72931 3.45009 3.60553 3.61648 3.71357 3.82136 3.90515 4.07330 4.13147 4.19413 4.27016 4.37091 4.41390 4.51461 4.53352 4.60916 4.63371 4.74153 4.77815 4.83275 4.93666 4.94244 5.01992 5.12849 5.15462 5.17690 5.24149 5.28712 5.33255 5.39031 5.45301 5.53814 5.66280 5.84137 6.05697 6.52941 6.53426 7.10400 7.19193 8.00528 8.12973 9.17540 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.004882 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.987516 B = 5733.624717 C = 7072.478389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.058 0.942 4 C 0.122 3.878 5 N -0.713 5.713 6 C 0.510 3.490 7 O -0.583 6.583 8 C -0.092 4.092 9 H 0.113 0.887 10 C -0.099 4.099 11 C -0.090 4.090 12 C -0.172 4.172 13 C -0.149 4.149 14 C -0.112 4.112 15 C -0.105 4.105 16 C -0.108 4.108 17 N -0.742 5.742 18 C -0.324 4.324 19 H 0.068 0.932 20 C -0.098 4.098 21 N -0.975 5.975 22 Si 1.125 2.875 23 H -0.284 1.284 24 H -0.276 1.276 25 H -0.300 1.300 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.409 0.591 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.359 0.641 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 3.054 -12.936 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.076 0.924 4 C -0.003 4.003 5 N -0.364 5.364 6 C 0.298 3.702 7 O -0.464 6.464 8 C -0.113 4.113 9 H 0.131 0.869 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.190 4.190 13 C -0.167 4.167 14 C -0.148 4.148 15 C -0.143 4.143 16 C -0.146 4.146 17 N -0.385 5.385 18 C -0.456 4.456 19 H 0.086 0.914 20 C -0.290 4.290 21 N -0.623 5.623 22 Si 0.952 3.048 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.226 1.226 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.245 0.755 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.191 0.809 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.383 2.888 -11.986 16.119 hybrid contribution -0.646 -0.491 -0.954 1.252 sum 9.737 2.397 -12.940 16.371 Atomic orbital electron populations 1.22223 0.96784 1.01061 1.01398 1.20608 0.93547 0.95494 0.84747 0.92431 1.21567 0.80205 1.00197 0.98328 1.46050 1.07915 1.58892 1.23539 1.21190 0.91363 0.76309 0.81332 1.90609 1.71167 1.49709 1.34905 1.21208 0.89481 1.02812 0.97772 0.86886 1.20373 0.97564 1.00043 0.95703 1.19967 0.92693 1.00646 0.99383 1.23047 0.99269 0.99664 0.97061 1.23206 0.99429 0.97550 0.96521 1.21095 0.99135 0.95034 0.99557 1.21808 0.94306 1.00193 0.97978 1.22142 0.98188 0.99136 0.95128 1.42601 1.79532 1.09531 1.06867 1.20329 1.40071 0.95197 0.89963 0.91407 1.26972 0.99827 0.97476 1.04738 1.70970 1.53734 1.09515 1.28043 0.82629 0.76760 0.73477 0.71983 1.21059 1.20146 1.22643 0.93778 0.90648 0.94024 0.93386 0.90093 0.75503 0.93296 0.93265 0.89599 0.91874 0.86546 0.86000 0.90313 0.90068 0.91181 0.90685 0.91522 0.91645 0.80941 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.49 71.98 0.68 -4.53 16 2 C 0.16 6.08 3.05 44.99 0.14 6.22 16 3 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 4 C 0.12 4.11 5.23 86.38 0.45 4.57 16 5 N -0.71 -23.61 5.11 -463.06 -2.37 -25.98 16 6 C 0.51 16.72 7.13 87.66 0.63 17.35 16 7 O -0.58 -22.58 15.19 -3.05 -0.05 -22.63 16 8 C -0.09 -2.35 2.07 -11.78 -0.02 -2.37 16 9 H 0.11 2.48 6.57 -2.39 -0.02 2.46 16 10 C -0.10 -2.64 4.27 28.95 0.12 -2.51 16 11 C -0.09 -2.04 5.13 28.67 0.15 -1.89 16 12 C -0.17 -3.45 9.28 24.97 0.23 -3.22 16 13 C -0.15 -2.59 8.55 25.06 0.21 -2.38 16 14 C -0.11 -1.81 5.42 29.79 0.16 -1.65 16 15 C -0.11 -1.84 5.60 31.16 0.17 -1.67 16 16 C -0.11 -2.57 5.19 31.54 0.16 -2.40 16 17 N -0.74 -34.61 4.56 -322.94 -1.47 -36.08 16 18 C -0.32 -16.98 9.93 84.03 0.83 -16.15 16 19 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 20 C -0.10 -5.43 5.50 84.86 0.47 -4.96 16 21 N -0.97 -58.71 13.70 21.65 0.30 -58.42 16 22 Si 1.13 50.12 29.92 68.60 2.05 52.18 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.41 13.79 7.39 -92.71 -0.69 13.11 16 32 H 0.05 1.52 6.99 -2.39 -0.02 1.50 16 33 H 0.05 1.43 7.71 -2.39 -0.02 1.41 16 34 H 0.09 1.75 5.63 -2.39 -0.01 1.73 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.08 1.36 3.56 -2.39 -0.01 1.35 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.62 6.28 -2.39 -0.02 1.61 16 43 H 0.06 1.84 6.47 -2.38 -0.02 1.83 16 44 H 0.36 18.02 6.63 -92.71 -0.61 17.40 16 45 H 0.24 14.71 6.77 -92.71 -0.63 14.08 16 Total: -1.00 -64.17 344.93 2.68 -61.49 By element: Atomic # 1 Polarization: 45.22 SS G_CDS: -0.17 Total: 45.05 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.39 Total: -15.62 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -3.54 Total: -120.47 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.18 kcal Total: -64.17 2.68 -61.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265791106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.327 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds