Wall clock time and date at job start Tue Mar 31 2020 02:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47158 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00227 * 2 1 3 5 5 N 1.46499 * 109.47197 * 175.00024 * 4 2 1 6 6 C 1.34769 * 120.00261 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99650 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00497 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.23346 * 60.51249 * 8 6 5 10 10 C 1.51395 * 109.26185 * 301.04064 * 8 6 5 11 11 C 1.50042 * 117.51217 * 165.81961 * 10 8 6 12 12 C 1.50518 * 112.73504 * 79.79423 * 11 10 8 13 13 C 1.31667 * 116.92347 * 275.28531 * 12 11 10 14 14 C 1.50797 * 118.08704 * 0.52756 * 13 12 11 15 15 C 1.52711 * 108.95884 * 104.85625 * 14 13 12 16 16 C 1.53854 * 109.27031 * 179.97438 * 8 6 5 17 17 N 1.46504 * 109.47157 * 239.99993 * 2 1 3 18 18 C 1.36941 * 119.99864 * 84.99830 * 17 2 1 19 19 H 1.07999 * 119.99774 * 0.02562 * 18 17 2 20 20 C 1.38815 * 119.99887 * 180.02562 * 18 17 2 21 21 N 1.31614 * 119.99775 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99725 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47069 * 90.00208 * 22 20 18 24 24 H 1.48501 * 109.47002 * 209.99979 * 22 20 18 25 25 H 1.48497 * 109.47466 * 329.99988 * 22 20 18 26 26 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47177 * 300.00145 * 1 2 3 28 28 H 1.09001 * 109.47227 * 60.00183 * 1 2 3 29 29 H 1.08992 * 109.46980 * 54.99753 * 4 2 1 30 30 H 1.09000 * 109.46809 * 294.99981 * 4 2 1 31 31 H 0.97003 * 119.99524 * 0.02562 * 5 4 2 32 32 H 1.09002 * 107.83604 * 287.95261 * 10 8 6 33 33 H 1.09000 * 107.83880 * 43.88836 * 10 8 6 34 34 H 1.08999 * 108.84579 * 319.02012 * 11 10 8 35 35 H 1.09000 * 109.01089 * 200.67505 * 11 10 8 36 36 H 1.08002 * 121.54113 * 95.56433 * 12 11 10 37 37 H 1.08001 * 120.95447 * 180.54339 * 13 12 11 38 38 H 1.09001 * 109.55702 * 224.70203 * 14 13 12 39 39 H 1.08999 * 109.55608 * 344.90884 * 14 13 12 40 40 H 1.09004 * 109.62086 * 61.90738 * 15 14 13 41 41 H 1.09000 * 109.62425 * 182.45944 * 15 14 13 42 42 H 1.09005 * 109.80051 * 106.58400 * 16 8 6 43 43 H 1.08996 * 109.80035 * 345.71553 * 16 8 6 44 44 H 0.96998 * 120.00007 * 265.00399 * 17 2 1 45 45 H 0.97002 * 119.99629 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4283 2.1911 7 8 3.5700 -1.8825 3.1403 8 6 5.6750 -1.5360 2.1311 9 1 6.1055 -0.5353 2.0944 10 6 6.0718 -2.2964 0.8835 11 6 7.5108 -2.2357 0.4631 12 6 8.3870 -3.1720 1.2511 13 6 8.8421 -2.7327 2.4059 14 6 8.4425 -1.3467 2.8456 15 6 7.3869 -1.4594 3.9433 16 6 6.1828 -2.2608 3.3896 17 7 2.0184 -0.6906 -1.1962 18 6 2.1491 -0.0075 -2.3758 19 1 1.8926 1.0405 -2.4241 20 6 2.6113 -0.6620 -3.5094 21 7 2.7375 -0.0052 -4.6429 22 14 3.0543 -2.4747 -3.4257 23 1 1.8564 -3.2922 -3.7453 24 1 4.1295 -2.7674 -4.4074 25 1 3.5291 -2.8058 -2.0582 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7198 1.2951 30 1 1.7516 -0.1584 2.1369 31 1 3.9824 -0.4621 0.4319 32 1 5.8102 -3.3439 1.0336 33 1 5.4679 -1.9209 0.0574 34 1 7.8746 -1.2172 0.5988 35 1 7.5832 -2.4936 -0.5935 36 1 8.6349 -4.1571 0.8842 37 1 9.4834 -3.3472 3.0204 38 1 9.3156 -0.8204 3.2315 39 1 8.0320 -0.7990 1.9973 40 1 7.8080 -1.9792 4.8040 41 1 7.0583 -0.4631 4.2389 42 1 6.4995 -3.2713 3.1313 43 1 5.3907 -2.3011 4.1373 44 1 2.2490 -1.6318 -1.1526 45 1 3.0601 -0.4627 -5.4351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265791107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:31 Heat of formation + Delta-G solvation = -21.986576 kcal Electronic energy + Delta-G solvation = -22911.864157 eV Core-core repulsion = 19736.388110 eV Total energy + Delta-G solvation = -3175.476046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.22754 -38.28229 -36.49020 -33.79541 -33.25558 -32.96786 -31.80856 -29.41946 -27.38263 -26.49675 -25.13287 -23.35973 -22.24129 -21.20930 -20.28987 -19.62708 -18.15757 -17.93013 -17.11852 -15.80171 -15.63549 -15.40955 -15.12249 -14.58875 -14.30980 -13.98461 -13.84530 -13.45945 -13.18947 -12.78160 -12.71526 -12.56868 -12.27186 -12.09106 -12.00397 -11.68237 -11.46963 -11.31428 -11.00316 -10.93597 -10.84695 -10.81852 -10.45501 -10.38882 -10.09309 -10.08707 -9.66993 -9.58388 -9.04809 -8.98140 -8.73087 -7.38903 -5.85344 -3.22183 2.12932 2.85754 3.29689 3.34690 3.39665 3.49673 4.50888 4.52459 4.64338 4.86500 4.90662 4.94565 5.03651 5.19040 5.22132 5.30338 5.37301 5.38083 5.44127 5.47800 5.57761 5.69962 5.76918 5.79036 5.80892 5.93326 5.98015 6.07007 6.09819 6.10270 6.15882 6.21217 6.27689 6.36013 6.37302 6.58625 6.66723 6.73316 6.79786 6.94239 7.84188 7.90316 8.33198 8.48856 9.11151 9.83427 10.02859 11.32633 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.005379 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.953388 B = 5203.732291 C = 6435.192093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.062 0.938 4 C 0.111 3.889 5 N -0.716 5.716 6 C 0.513 3.487 7 O -0.552 6.552 8 C -0.102 4.102 9 H 0.096 0.904 10 C -0.111 4.111 11 C -0.094 4.094 12 C -0.158 4.158 13 C -0.156 4.156 14 C -0.111 4.111 15 C -0.112 4.112 16 C -0.112 4.112 17 N -0.748 5.748 18 C -0.247 4.247 19 H 0.091 0.909 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.881 3.119 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.276 1.276 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -3.172 14.920 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.080 0.920 4 C -0.013 4.013 5 N -0.368 5.368 6 C 0.299 3.701 7 O -0.430 6.430 8 C -0.123 4.123 9 H 0.114 0.886 10 C -0.149 4.149 11 C -0.131 4.131 12 C -0.176 4.176 13 C -0.174 4.174 14 C -0.148 4.148 15 C -0.149 4.149 16 C -0.150 4.150 17 N -0.392 5.392 18 C -0.377 4.377 19 H 0.109 0.891 20 C -0.187 4.187 21 N -0.578 5.578 22 Si 0.711 3.289 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.202 1.202 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.512 -3.292 15.378 18.380 hybrid contribution 0.502 -1.276 -0.632 1.510 sum 10.014 -4.569 14.746 18.401 Atomic orbital electron populations 1.22329 0.97796 1.01282 1.00910 1.20484 0.92858 0.96018 0.85129 0.92020 1.21734 0.79724 1.01039 0.98846 1.46059 1.08196 1.58957 1.23592 1.20607 0.90014 0.77327 0.82132 1.90626 1.70189 1.48503 1.33718 1.21217 0.92015 1.01820 0.97294 0.88562 1.20579 0.96550 1.01286 0.96479 1.20143 0.93701 0.99608 0.99675 1.23036 0.98712 0.99389 0.96481 1.23009 1.00075 0.97449 0.96903 1.21078 0.98708 0.95169 0.99851 1.21836 0.95345 1.00294 0.97474 1.22196 0.97777 0.98719 0.96295 1.42838 1.79672 1.09570 1.07113 1.19055 1.37409 0.95609 0.85577 0.89095 1.24650 1.01306 0.97271 0.95514 1.69694 1.52335 1.35553 1.00241 0.86622 0.78236 0.86987 0.77057 1.21152 1.21736 1.20246 0.93334 0.93859 0.91841 0.91985 0.91497 0.75386 0.91837 0.91184 0.90475 0.91092 0.87028 0.87478 0.91835 0.89819 0.91911 0.91771 0.91202 0.89604 0.80517 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 2 C 0.16 2.92 3.05 -67.93 -0.21 2.72 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C 0.11 1.79 5.23 -4.04 -0.02 1.76 16 5 N -0.72 -11.23 5.11 -60.30 -0.31 -11.54 16 6 C 0.51 8.00 7.14 -10.99 -0.08 7.92 16 7 O -0.55 -10.19 15.18 5.55 0.08 -10.10 16 8 C -0.10 -1.27 2.07 -92.14 -0.19 -1.46 16 9 H 0.10 1.06 6.57 -51.93 -0.34 0.72 16 10 C -0.11 -1.39 4.28 -29.01 -0.12 -1.51 16 11 C -0.09 -1.03 5.17 -29.44 -0.15 -1.18 16 12 C -0.16 -1.59 9.27 -36.27 -0.34 -1.92 16 13 C -0.16 -1.46 8.55 -36.13 -0.31 -1.77 16 14 C -0.11 -1.00 5.41 -27.98 -0.15 -1.15 16 15 C -0.11 -1.06 5.60 -25.89 -0.14 -1.20 16 16 C -0.11 -1.32 5.19 -25.30 -0.13 -1.45 16 17 N -0.75 -16.27 4.37 -53.42 -0.23 -16.50 16 18 C -0.25 -6.49 10.41 -15.06 -0.16 -6.65 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 21 N -0.93 -28.11 13.97 55.49 0.78 -27.33 16 22 Si 0.88 21.25 27.74 -169.99 -4.71 16.54 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.41 6.43 7.33 -40.82 -0.30 6.13 16 32 H 0.06 0.84 7.72 -51.93 -0.40 0.44 16 33 H 0.07 0.98 6.92 -51.93 -0.36 0.62 16 34 H 0.08 0.78 5.62 -51.93 -0.29 0.49 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.11 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.78 3.56 -51.93 -0.19 0.60 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 43 H 0.09 1.17 6.46 -51.93 -0.34 0.84 16 44 H 0.36 7.96 5.66 -40.82 -0.23 7.73 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -30.23 343.44 -8.40 -38.63 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.43 Total: 13.20 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.75 Total: -8.06 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.23 Total: -55.38 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.23 -8.40 -38.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265791107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.647 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds