Wall clock time and date at job start Tue Mar 31 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47158 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00227 * 2 1 3 5 5 N 1.46499 * 109.47197 * 175.00024 * 4 2 1 6 6 C 1.34769 * 120.00261 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99650 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00497 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.23346 * 60.51249 * 8 6 5 10 10 C 1.51395 * 109.26185 * 301.04064 * 8 6 5 11 11 C 1.50042 * 117.51217 * 165.81961 * 10 8 6 12 12 C 1.50518 * 112.73504 * 79.79423 * 11 10 8 13 13 C 1.31667 * 116.92347 * 275.28531 * 12 11 10 14 14 C 1.50797 * 118.08704 * 0.52756 * 13 12 11 15 15 C 1.52711 * 108.95884 * 104.85625 * 14 13 12 16 16 C 1.53854 * 109.27031 * 179.97438 * 8 6 5 17 17 N 1.46504 * 109.47157 * 239.99993 * 2 1 3 18 18 C 1.36941 * 119.99864 * 84.99830 * 17 2 1 19 19 H 1.07999 * 119.99774 * 0.02562 * 18 17 2 20 20 C 1.38815 * 119.99887 * 180.02562 * 18 17 2 21 21 N 1.31614 * 119.99775 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99725 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47069 * 90.00208 * 22 20 18 24 24 H 1.48501 * 109.47002 * 209.99979 * 22 20 18 25 25 H 1.48497 * 109.47466 * 329.99988 * 22 20 18 26 26 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47177 * 300.00145 * 1 2 3 28 28 H 1.09001 * 109.47227 * 60.00183 * 1 2 3 29 29 H 1.08992 * 109.46980 * 54.99753 * 4 2 1 30 30 H 1.09000 * 109.46809 * 294.99981 * 4 2 1 31 31 H 0.97003 * 119.99524 * 0.02562 * 5 4 2 32 32 H 1.09002 * 107.83604 * 287.95261 * 10 8 6 33 33 H 1.09000 * 107.83880 * 43.88836 * 10 8 6 34 34 H 1.08999 * 108.84579 * 319.02012 * 11 10 8 35 35 H 1.09000 * 109.01089 * 200.67505 * 11 10 8 36 36 H 1.08002 * 121.54113 * 95.56433 * 12 11 10 37 37 H 1.08001 * 120.95447 * 180.54339 * 13 12 11 38 38 H 1.09001 * 109.55702 * 224.70203 * 14 13 12 39 39 H 1.08999 * 109.55608 * 344.90884 * 14 13 12 40 40 H 1.09004 * 109.62086 * 61.90738 * 15 14 13 41 41 H 1.09000 * 109.62425 * 182.45944 * 15 14 13 42 42 H 1.09005 * 109.80051 * 106.58400 * 16 8 6 43 43 H 1.08996 * 109.80035 * 345.71553 * 16 8 6 44 44 H 0.96998 * 120.00007 * 265.00399 * 17 2 1 45 45 H 0.97002 * 119.99629 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4283 2.1911 7 8 3.5700 -1.8825 3.1403 8 6 5.6750 -1.5360 2.1311 9 1 6.1055 -0.5353 2.0944 10 6 6.0718 -2.2964 0.8835 11 6 7.5108 -2.2357 0.4631 12 6 8.3870 -3.1720 1.2511 13 6 8.8421 -2.7327 2.4059 14 6 8.4425 -1.3467 2.8456 15 6 7.3869 -1.4594 3.9433 16 6 6.1828 -2.2608 3.3896 17 7 2.0184 -0.6906 -1.1962 18 6 2.1491 -0.0075 -2.3758 19 1 1.8926 1.0405 -2.4241 20 6 2.6113 -0.6620 -3.5094 21 7 2.7375 -0.0052 -4.6429 22 14 3.0543 -2.4747 -3.4257 23 1 1.8564 -3.2922 -3.7453 24 1 4.1295 -2.7674 -4.4074 25 1 3.5291 -2.8058 -2.0582 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7198 1.2951 30 1 1.7516 -0.1584 2.1369 31 1 3.9824 -0.4621 0.4319 32 1 5.8102 -3.3439 1.0336 33 1 5.4679 -1.9209 0.0574 34 1 7.8746 -1.2172 0.5988 35 1 7.5832 -2.4936 -0.5935 36 1 8.6349 -4.1571 0.8842 37 1 9.4834 -3.3472 3.0204 38 1 9.3156 -0.8204 3.2315 39 1 8.0320 -0.7990 1.9973 40 1 7.8080 -1.9792 4.8040 41 1 7.0583 -0.4631 4.2389 42 1 6.4995 -3.2713 3.1313 43 1 5.3907 -2.3011 4.1373 44 1 2.2490 -1.6318 -1.1526 45 1 3.0601 -0.4627 -5.4351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265791107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:28 Heat of formation + Delta-G solvation = -40.328727 kcal Electronic energy + Delta-G solvation = -22912.659532 eV Core-core repulsion = 19736.388110 eV Total energy + Delta-G solvation = -3176.271421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.35830 -39.30293 -38.01324 -35.29474 -34.29038 -33.98629 -33.44797 -31.18153 -28.35028 -27.49119 -26.25426 -25.24964 -23.22459 -22.12838 -21.81343 -20.78862 -19.82448 -18.90998 -18.35984 -17.14060 -16.99330 -16.51783 -16.17780 -15.95399 -15.57648 -15.40620 -14.80671 -14.70357 -14.46554 -14.40625 -13.89759 -13.75876 -13.69959 -13.37849 -13.24064 -12.90177 -12.84462 -12.53290 -12.37742 -12.17615 -12.10992 -11.80554 -11.74193 -11.71136 -11.64368 -11.32441 -11.05541 -10.92124 -10.77950 -10.05053 -9.74254 -9.34705 -8.00429 -5.33892 1.37301 1.38871 1.40081 1.46633 1.63027 2.27363 2.48184 3.32221 3.53742 3.64339 3.66919 3.85672 3.94895 4.09150 4.14552 4.21338 4.32879 4.40316 4.43543 4.53885 4.59316 4.62753 4.71532 4.76309 4.84002 4.84710 4.96020 5.00381 5.03238 5.14127 5.17631 5.23065 5.26158 5.31712 5.36273 5.43282 5.48018 5.59447 5.80925 5.85148 6.06540 6.22795 6.57499 7.08633 7.23596 7.83430 8.02387 9.20834 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.005379 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.953388 B = 5203.732291 C = 6435.192093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.060 0.940 4 C 0.120 3.880 5 N -0.717 5.717 6 C 0.512 3.488 7 O -0.581 6.581 8 C -0.095 4.095 9 H 0.114 0.886 10 C -0.104 4.104 11 C -0.093 4.093 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.112 4.112 15 C -0.106 4.106 16 C -0.108 4.108 17 N -0.748 5.748 18 C -0.222 4.222 19 H 0.063 0.937 20 C -0.055 4.055 21 N -0.981 5.981 22 Si 0.944 3.056 23 H -0.289 1.289 24 H -0.298 1.298 25 H -0.251 1.251 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.410 0.590 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.363 0.637 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 -3.800 16.897 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.078 0.922 4 C -0.005 4.005 5 N -0.368 5.368 6 C 0.299 3.701 7 O -0.462 6.462 8 C -0.116 4.116 9 H 0.132 0.868 10 C -0.142 4.142 11 C -0.130 4.130 12 C -0.190 4.190 13 C -0.168 4.168 14 C -0.149 4.149 15 C -0.143 4.143 16 C -0.146 4.146 17 N -0.392 5.392 18 C -0.353 4.353 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.632 5.632 22 Si 0.773 3.227 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.176 1.176 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.247 0.753 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.196 0.804 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.563 -3.918 17.412 20.739 hybrid contribution 0.110 -0.991 -1.163 1.532 sum 10.673 -4.909 16.249 20.052 Atomic orbital electron populations 1.22220 0.96353 1.01622 1.01477 1.20650 0.93761 0.95748 0.84293 0.92171 1.21617 0.80008 1.00667 0.98200 1.46098 1.08092 1.58938 1.23694 1.21124 0.91225 0.76379 0.81358 1.90616 1.71090 1.49683 1.34780 1.21227 0.89714 1.02929 0.97704 0.86835 1.20533 0.97509 1.00422 0.95753 1.20109 0.92782 1.00538 0.99563 1.23058 0.99304 0.99670 0.96984 1.23197 0.99435 0.97622 0.96558 1.21093 0.99098 0.95110 0.99552 1.21799 0.94395 1.00266 0.97876 1.22132 0.98126 0.98990 0.95328 1.42806 1.79860 1.09547 1.06961 1.18987 1.34799 0.94516 0.86958 0.91938 1.25324 1.02570 1.01503 0.95271 1.69858 1.54765 1.37437 1.01113 0.85583 0.77418 0.81728 0.78018 1.21588 1.22474 1.17560 0.93114 0.90601 0.93975 0.92470 0.89878 0.75342 0.92872 0.92802 0.89587 0.91538 0.86513 0.86186 0.90310 0.90176 0.90853 0.91229 0.91473 0.91574 0.80363 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.49 71.98 0.68 -4.20 16 2 C 0.16 5.56 3.05 44.99 0.14 5.70 16 3 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 4 C 0.12 3.61 5.23 86.38 0.45 4.06 16 5 N -0.72 -21.39 5.11 -463.08 -2.37 -23.76 16 6 C 0.51 15.25 7.14 87.66 0.63 15.88 16 7 O -0.58 -20.81 15.18 -3.04 -0.05 -20.85 16 8 C -0.09 -2.20 2.07 -11.78 -0.02 -2.22 16 9 H 0.11 2.25 6.57 -2.39 -0.02 2.23 16 10 C -0.10 -2.46 4.28 29.12 0.12 -2.33 16 11 C -0.09 -1.87 5.17 28.84 0.15 -1.72 16 12 C -0.17 -3.11 9.27 24.97 0.23 -2.88 16 13 C -0.15 -2.40 8.55 25.06 0.21 -2.19 16 14 C -0.11 -1.68 5.41 29.78 0.16 -1.52 16 15 C -0.11 -1.72 5.60 31.14 0.17 -1.55 16 16 C -0.11 -2.35 5.19 31.52 0.16 -2.19 16 17 N -0.75 -31.75 4.37 -322.93 -1.41 -33.16 16 18 C -0.22 -11.70 10.41 84.03 0.87 -10.83 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 20 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 21 N -0.98 -60.57 13.97 21.65 0.30 -60.27 16 22 Si 0.94 43.97 27.74 68.60 1.90 45.87 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.41 12.31 7.33 -92.71 -0.68 11.63 16 32 H 0.05 1.35 7.72 -2.39 -0.02 1.33 16 33 H 0.05 1.44 6.92 -2.39 -0.02 1.42 16 34 H 0.09 1.57 5.62 -2.39 -0.01 1.55 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.12 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.27 3.56 -2.39 -0.01 1.26 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.49 6.29 -2.38 -0.01 1.48 16 43 H 0.07 1.74 6.46 -2.39 -0.02 1.72 16 44 H 0.36 15.34 5.66 -92.71 -0.52 14.82 16 45 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -65.01 343.44 2.54 -62.47 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.28 Total: 38.30 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 4.43 Total: -8.59 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -3.47 Total: -117.19 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.87 kcal Total: -65.01 2.54 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265791107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.144 kcal (2) G-P(sol) polarization free energy of solvation -65.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds