Wall clock time and date at job start Tue Mar 31 2020 01:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47121 * 2 1 4 4 C 1.53006 * 109.47308 * 119.99495 * 2 1 3 5 5 N 1.46493 * 109.47089 * 175.00375 * 4 2 1 6 6 C 1.46497 * 119.99947 * 270.00112 * 5 4 2 7 7 C 1.36933 * 120.00213 * 89.99914 * 5 4 2 8 8 H 1.08000 * 120.00054 * 23.61953 * 7 5 4 9 9 C 1.38812 * 120.00379 * 203.61480 * 7 5 4 10 10 N 1.31621 * 119.99985 * 11.31584 * 9 7 5 11 11 Si 1.86799 * 120.00245 * 191.32316 * 9 7 5 12 12 H 1.48496 * 109.47157 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47111 * 119.99673 * 11 9 7 14 14 H 1.48499 * 109.47243 * 239.99632 * 11 9 7 15 15 N 1.46495 * 109.47594 * 239.99620 * 2 1 3 16 16 C 1.34775 * 119.99965 * 84.99366 * 15 2 1 17 17 O 1.21289 * 120.00049 * 0.02562 * 16 15 2 18 18 C 1.50701 * 120.00487 * 180.02562 * 16 15 2 19 19 C 1.52998 * 109.47497 * 180.02562 * 18 16 15 20 20 H 1.08990 * 115.55249 * 29.32760 * 19 18 16 21 21 C 1.53003 * 117.49864 * 243.62290 * 19 18 16 22 22 C 1.53000 * 60.00002 * 252.51035 * 21 19 18 23 23 H 1.09006 * 117.51396 * 107.47829 * 22 21 19 24 24 C 1.52990 * 117.49811 * 252.50696 * 22 21 19 25 25 C 1.53001 * 117.50107 * 248.62353 * 24 22 21 26 26 C 1.53003 * 60.02949 * 252.49854 * 25 24 22 27 27 H 1.09000 * 109.47519 * 300.00003 * 1 2 3 28 28 H 1.08999 * 109.47323 * 60.00453 * 1 2 3 29 29 H 1.09002 * 109.46544 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46815 * 295.00415 * 4 2 1 31 31 H 1.08998 * 109.46880 * 55.00348 * 4 2 1 32 32 H 1.09002 * 109.47756 * 94.53309 * 6 5 4 33 33 H 1.09010 * 109.47304 * 214.53350 * 6 5 4 34 34 H 1.09007 * 109.47328 * 334.52779 * 6 5 4 35 35 H 0.96996 * 120.00304 * 180.02562 * 10 9 7 36 36 H 0.97002 * 120.00251 * 265.00631 * 15 2 1 37 37 H 1.09001 * 109.46691 * 60.00041 * 18 16 15 38 38 H 1.09000 * 109.46975 * 300.01219 * 18 16 15 39 39 H 1.08993 * 117.50298 * 145.01503 * 21 19 18 40 40 H 1.09004 * 117.49703 * 0.02562 * 21 19 18 41 41 H 1.09003 * 115.55018 * 34.29912 * 24 22 21 42 42 H 1.08999 * 117.49967 * 359.97438 * 25 24 22 43 43 H 1.08999 * 117.49961 * 145.00127 * 25 24 22 44 44 H 1.09001 * 117.49777 * 107.50782 * 26 25 24 45 45 H 1.09008 * 117.50070 * 252.51698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1259 -1.9917 0.5614 7 6 4.2798 0.1651 1.7240 8 1 3.8833 0.8073 2.4965 9 6 5.5799 0.3445 1.2719 10 7 5.9919 -0.2792 0.1885 11 14 6.7449 1.4710 2.2010 12 1 6.0434 2.0485 3.3756 13 1 7.9236 0.6935 2.6608 14 1 7.1936 2.5669 1.3050 15 7 2.0184 -0.6906 -1.1960 16 6 2.1471 -0.0184 -2.3571 17 8 1.8589 1.1585 -2.4115 18 6 2.6490 -0.7289 -3.5877 19 6 2.7010 0.2543 -4.7587 20 1 2.8769 1.2960 -4.4906 21 6 1.7887 -0.0232 -5.9552 22 6 3.2975 -0.2466 -6.0757 23 1 3.6531 -1.2765 -6.1076 24 6 4.0947 0.7532 -6.9156 25 6 4.6912 0.2523 -8.2325 26 6 5.6042 0.5299 -7.0366 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.7516 -0.1581 2.1370 31 1 1.6055 -1.7197 1.2953 32 1 4.3533 -1.7641 -0.4801 33 1 5.0473 -2.2385 1.0889 34 1 3.4428 -2.8400 0.6071 35 1 6.9004 -0.1541 -0.1273 36 1 2.2491 -1.6318 -1.1525 37 1 1.9761 -1.5508 -3.8324 38 1 3.6480 -1.1215 -3.3984 39 1 1.3640 0.8360 -6.4743 40 1 1.1510 -0.9060 -5.9078 41 1 3.7391 1.7831 -6.8836 42 1 4.5159 -0.7896 -8.5004 43 1 4.7279 0.9527 -9.0670 44 1 6.0294 -0.3294 -6.5179 45 1 6.2415 1.4130 -7.0841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:13 Heat of formation + Delta-G solvation = 22.394977 kcal Electronic energy + Delta-G solvation = -22460.905892 eV Core-core repulsion = 19287.354374 eV Total energy + Delta-G solvation = -3173.551518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.41323 -38.28249 -36.35721 -35.36931 -33.92013 -31.38826 -30.43037 -28.56643 -26.15922 -25.57573 -23.64614 -22.46804 -22.13249 -21.07041 -20.10248 -19.94811 -19.51481 -16.78010 -16.63959 -15.67080 -15.49213 -14.98531 -14.81907 -14.59505 -13.74507 -13.64869 -13.49236 -13.17816 -12.82864 -12.75758 -12.29625 -12.09105 -11.70860 -11.62930 -11.46369 -11.40872 -11.18456 -11.04173 -11.02289 -10.83717 -10.75121 -10.60965 -10.51805 -10.17513 -9.92703 -9.84251 -9.70810 -9.39707 -9.06884 -8.57357 -8.27134 -6.72616 -5.71795 -3.17546 3.33950 3.39340 3.46962 3.48414 3.48908 3.89131 4.20802 4.50044 4.52987 4.82165 4.88358 5.04870 5.21044 5.26510 5.33400 5.36721 5.44045 5.51174 5.58277 5.63268 5.72539 5.79376 5.84286 5.87692 5.94776 6.04774 6.05618 6.07334 6.13820 6.14133 6.28400 6.29058 6.50610 6.54544 6.58173 6.66712 6.94074 7.27172 7.34038 7.66790 7.82207 8.24545 8.40808 8.95813 9.24660 9.86928 10.35267 11.33574 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.004848 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.878748 B = 5774.502223 C = 7162.768860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.905 5.905 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.701 5.701 16 C 0.521 3.479 17 O -0.553 6.553 18 C -0.111 4.111 19 C -0.120 4.120 20 H 0.118 0.882 21 C -0.172 4.172 22 C -0.123 4.123 23 H 0.103 0.897 24 C -0.119 4.119 25 C -0.180 4.180 26 C -0.177 4.177 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.042 0.958 34 H -0.006 1.006 35 H 0.250 0.750 36 H 0.394 0.606 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 -4.062 -11.480 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.550 5.550 11 Si 0.733 3.267 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.350 5.350 16 C 0.307 3.693 17 O -0.432 6.432 18 C -0.151 4.151 19 C -0.139 4.139 20 H 0.136 0.864 21 C -0.209 4.209 22 C -0.141 4.141 23 H 0.121 0.879 24 C -0.138 4.138 25 C -0.217 4.217 26 C -0.214 4.214 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.061 0.939 36 H 0.228 0.772 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.117 -3.237 -11.551 13.948 hybrid contribution 0.940 0.203 0.371 1.031 sum -6.176 -3.034 -11.180 13.128 Atomic orbital electron populations 1.22149 0.97079 1.00941 1.01577 1.21815 0.91508 0.99142 0.86574 0.89803 1.21193 0.85794 0.97147 0.94416 1.43878 0.99063 1.20844 1.68152 1.20841 0.94512 0.85043 0.97871 1.19218 0.94570 1.10521 1.14198 0.91443 1.25004 0.98877 0.99032 0.96346 1.70036 1.17089 1.45710 1.22120 0.86216 0.81051 0.80278 0.79195 1.20344 1.21703 1.21762 1.45779 1.66275 1.13597 1.09320 1.20292 0.77219 0.87233 0.84584 1.90622 1.51087 1.16128 1.85354 1.21195 1.03233 0.98027 0.92606 1.22104 1.03187 1.00972 0.87606 0.86394 1.23087 0.92287 1.03017 1.02525 1.21835 0.94564 0.98596 0.99105 0.87932 1.21714 0.94821 0.98917 0.98306 1.22926 1.04990 1.02041 0.91785 1.22951 0.92890 1.03615 1.01900 0.92246 0.93024 0.93311 0.92437 0.94115 0.95039 0.93926 0.98744 0.93937 0.77245 0.89651 0.88300 0.88975 0.89005 0.87908 0.88929 0.89085 0.88578 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 37.16 0.35 -2.09 16 2 C 0.12 2.23 2.88 -67.93 -0.20 2.04 16 3 H 0.08 1.95 7.58 -51.93 -0.39 1.55 16 4 C 0.14 2.79 5.33 -4.04 -0.02 2.77 16 5 N -0.60 -14.37 2.78 -181.11 -0.50 -14.87 16 6 C 0.16 3.73 7.61 59.85 0.46 4.19 16 7 C -0.26 -6.96 9.66 -15.06 -0.15 -7.10 16 8 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -25.96 10.66 55.49 0.59 -25.37 16 11 Si 0.90 22.15 29.57 -169.99 -5.03 17.12 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 N -0.70 -12.80 4.41 -53.80 -0.24 -13.03 16 16 C 0.52 9.92 7.79 -10.99 -0.09 9.83 16 17 O -0.55 -12.52 15.23 5.55 0.08 -12.43 16 18 C -0.11 -1.65 5.98 -27.88 -0.17 -1.82 16 19 C -0.12 -1.75 5.13 -90.62 -0.47 -2.22 16 20 H 0.12 2.05 7.30 -51.93 -0.38 1.67 16 21 C -0.17 -2.05 9.90 -26.73 -0.26 -2.31 16 22 C -0.12 -1.49 5.57 -90.62 -0.50 -1.99 16 23 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 24 C -0.12 -1.39 5.85 -90.59 -0.53 -1.92 16 25 C -0.18 -1.77 10.25 -26.73 -0.27 -2.04 16 26 C -0.18 -1.96 10.26 -26.69 -0.27 -2.23 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 31 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.03 0.77 6.90 -51.93 -0.36 0.41 16 33 H 0.04 1.08 7.30 -51.92 -0.38 0.70 16 34 H -0.01 -0.12 7.84 -51.93 -0.41 -0.52 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.39 6.56 7.17 -40.82 -0.29 6.26 16 37 H 0.09 1.03 7.88 -51.93 -0.41 0.62 16 38 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 41 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -31.24 366.40 -9.84 -41.08 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.06 Total: 6.83 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.21 Total: -4.84 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.15 Total: -53.27 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.24 -9.84 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.473 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds