Wall clock time and date at job start Tue Mar 31 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47121 * 2 1 4 4 C 1.53006 * 109.47308 * 119.99495 * 2 1 3 5 5 N 1.46493 * 109.47089 * 175.00375 * 4 2 1 6 6 C 1.46497 * 119.99947 * 270.00112 * 5 4 2 7 7 C 1.36933 * 120.00213 * 89.99914 * 5 4 2 8 8 H 1.08000 * 120.00054 * 23.61953 * 7 5 4 9 9 C 1.38812 * 120.00379 * 203.61480 * 7 5 4 10 10 N 1.31621 * 119.99985 * 11.31584 * 9 7 5 11 11 Si 1.86799 * 120.00245 * 191.32316 * 9 7 5 12 12 H 1.48496 * 109.47157 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47111 * 119.99673 * 11 9 7 14 14 H 1.48499 * 109.47243 * 239.99632 * 11 9 7 15 15 N 1.46495 * 109.47594 * 239.99620 * 2 1 3 16 16 C 1.34775 * 119.99965 * 84.99366 * 15 2 1 17 17 O 1.21289 * 120.00049 * 0.02562 * 16 15 2 18 18 C 1.50701 * 120.00487 * 180.02562 * 16 15 2 19 19 C 1.52998 * 109.47497 * 180.02562 * 18 16 15 20 20 H 1.08990 * 115.55249 * 29.32760 * 19 18 16 21 21 C 1.53003 * 117.49864 * 243.62290 * 19 18 16 22 22 C 1.53000 * 60.00002 * 252.51035 * 21 19 18 23 23 H 1.09006 * 117.51396 * 107.47829 * 22 21 19 24 24 C 1.52990 * 117.49811 * 252.50696 * 22 21 19 25 25 C 1.53001 * 117.50107 * 248.62353 * 24 22 21 26 26 C 1.53003 * 60.02949 * 252.49854 * 25 24 22 27 27 H 1.09000 * 109.47519 * 300.00003 * 1 2 3 28 28 H 1.08999 * 109.47323 * 60.00453 * 1 2 3 29 29 H 1.09002 * 109.46544 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46815 * 295.00415 * 4 2 1 31 31 H 1.08998 * 109.46880 * 55.00348 * 4 2 1 32 32 H 1.09002 * 109.47756 * 94.53309 * 6 5 4 33 33 H 1.09010 * 109.47304 * 214.53350 * 6 5 4 34 34 H 1.09007 * 109.47328 * 334.52779 * 6 5 4 35 35 H 0.96996 * 120.00304 * 180.02562 * 10 9 7 36 36 H 0.97002 * 120.00251 * 265.00631 * 15 2 1 37 37 H 1.09001 * 109.46691 * 60.00041 * 18 16 15 38 38 H 1.09000 * 109.46975 * 300.01219 * 18 16 15 39 39 H 1.08993 * 117.50298 * 145.01503 * 21 19 18 40 40 H 1.09004 * 117.49703 * 0.02562 * 21 19 18 41 41 H 1.09003 * 115.55018 * 34.29912 * 24 22 21 42 42 H 1.08999 * 117.49967 * 359.97438 * 25 24 22 43 43 H 1.08999 * 117.49961 * 145.00127 * 25 24 22 44 44 H 1.09001 * 117.49777 * 107.50782 * 26 25 24 45 45 H 1.09008 * 117.50070 * 252.51698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1259 -1.9917 0.5614 7 6 4.2798 0.1651 1.7240 8 1 3.8833 0.8073 2.4965 9 6 5.5799 0.3445 1.2719 10 7 5.9919 -0.2792 0.1885 11 14 6.7449 1.4710 2.2010 12 1 6.0434 2.0485 3.3756 13 1 7.9236 0.6935 2.6608 14 1 7.1936 2.5669 1.3050 15 7 2.0184 -0.6906 -1.1960 16 6 2.1471 -0.0184 -2.3571 17 8 1.8589 1.1585 -2.4115 18 6 2.6490 -0.7289 -3.5877 19 6 2.7010 0.2543 -4.7587 20 1 2.8769 1.2960 -4.4906 21 6 1.7887 -0.0232 -5.9552 22 6 3.2975 -0.2466 -6.0757 23 1 3.6531 -1.2765 -6.1076 24 6 4.0947 0.7532 -6.9156 25 6 4.6912 0.2523 -8.2325 26 6 5.6042 0.5299 -7.0366 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.7516 -0.1581 2.1370 31 1 1.6055 -1.7197 1.2953 32 1 4.3533 -1.7641 -0.4801 33 1 5.0473 -2.2385 1.0889 34 1 3.4428 -2.8400 0.6071 35 1 6.9004 -0.1541 -0.1273 36 1 2.2491 -1.6318 -1.1525 37 1 1.9761 -1.5508 -3.8324 38 1 3.6480 -1.1215 -3.3984 39 1 1.3640 0.8360 -6.4743 40 1 1.1510 -0.9060 -5.9078 41 1 3.7391 1.7831 -6.8836 42 1 4.5159 -0.7896 -8.5004 43 1 4.7279 0.9527 -9.0670 44 1 6.0294 -0.3294 -6.5179 45 1 6.2415 1.4130 -7.0841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754319824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:12 Heat of formation + Delta-G solvation = 5.033365 kcal Electronic energy + Delta-G solvation = -22461.658748 eV Core-core repulsion = 19287.354374 eV Total energy + Delta-G solvation = -3174.304373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.83011 -39.36520 -38.00277 -36.41851 -35.66680 -33.16509 -32.09773 -29.81368 -27.95687 -27.39429 -24.57669 -23.82182 -23.21509 -22.56912 -21.49423 -21.01158 -20.89304 -18.77106 -18.02496 -17.17523 -16.79215 -16.43241 -16.12989 -16.00783 -15.49706 -15.18198 -14.87262 -14.50637 -14.37927 -14.02728 -13.75334 -13.53422 -13.14896 -12.98196 -12.85899 -12.68364 -12.55073 -12.48967 -12.37747 -12.27430 -12.09462 -12.07575 -12.02283 -11.81583 -11.68880 -11.51046 -10.78388 -10.68007 -10.63429 -10.21068 -9.84063 -8.70478 -7.82096 -5.28050 1.41702 1.44502 1.52854 1.85003 2.39086 2.50740 2.67591 3.26382 3.32253 3.53899 3.72690 3.82641 3.91702 4.03381 4.15406 4.23532 4.32252 4.34770 4.40945 4.43569 4.51599 4.59765 4.74667 4.78416 4.80112 4.86085 4.86564 4.92827 4.95047 5.01982 5.03961 5.22161 5.23235 5.27634 5.32736 5.38072 5.40487 5.42904 5.65855 5.77849 5.83289 6.35402 6.78796 7.19038 7.49263 7.91075 8.31384 9.20249 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.004848 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.878748 B = 5774.502223 C = 7162.768860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.122 3.878 3 H 0.031 0.969 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.174 3.826 7 C -0.261 4.261 8 H 0.065 0.935 9 C -0.047 4.047 10 N -0.928 5.928 11 Si 0.957 3.043 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.301 1.301 15 N -0.696 5.696 16 C 0.509 3.491 17 O -0.598 6.598 18 C -0.098 4.098 19 C -0.151 4.151 20 H 0.078 0.922 21 C -0.155 4.155 22 C -0.108 4.108 23 H 0.117 0.883 24 C -0.141 4.141 25 C -0.157 4.157 26 C -0.189 4.189 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.014 0.986 33 H 0.010 0.990 34 H 0.037 0.963 35 H 0.244 0.756 36 H 0.404 0.596 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -5.874 -12.123 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.029 3.971 7 C -0.392 4.392 8 H 0.083 0.917 9 C -0.242 4.242 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.215 1.215 14 H -0.229 1.229 15 N -0.346 5.346 16 C 0.297 3.703 17 O -0.480 6.480 18 C -0.137 4.137 19 C -0.170 4.170 20 H 0.096 0.904 21 C -0.191 4.191 22 C -0.126 4.126 23 H 0.135 0.865 24 C -0.159 4.159 25 C -0.194 4.194 26 C -0.226 4.226 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.239 0.761 37 H 0.141 0.859 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.473 -5.077 -12.172 15.675 hybrid contribution 1.304 0.789 0.606 1.641 sum -7.168 -4.288 -11.566 14.266 Atomic orbital electron populations 1.22003 0.93777 1.02819 1.01708 1.21620 0.93971 0.96250 0.86751 0.95041 1.21364 0.83282 0.99235 0.94550 1.44083 1.00855 1.20462 1.68003 1.20641 0.94253 0.86061 0.96115 1.19499 0.95116 1.10667 1.13901 0.91744 1.25648 1.00395 1.00825 0.97375 1.70177 1.16856 1.47137 1.23326 0.85356 0.79387 0.78428 0.78221 1.19251 1.21463 1.22852 1.45790 1.65845 1.13987 1.08947 1.21079 0.76452 0.86922 0.85823 1.90598 1.53055 1.18187 1.86153 1.21158 1.03377 0.98537 0.90647 1.21934 1.07092 0.99037 0.88890 0.90354 1.23180 0.92430 1.03781 0.99742 1.21892 0.94968 0.99077 0.96662 0.86531 1.21761 0.95192 0.98682 1.00246 1.23006 1.02285 1.03002 0.91076 1.23010 0.92647 1.03669 1.03276 0.90748 0.94323 0.90423 0.92099 0.90476 0.96818 0.97130 0.94429 0.94654 0.76054 0.85933 0.88884 0.88832 0.86795 0.88854 0.87636 0.87721 0.88913 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.48 71.98 0.68 -3.48 16 2 C 0.12 4.57 2.88 44.99 0.13 4.70 16 3 H 0.03 1.51 7.58 -2.39 -0.02 1.49 16 4 C 0.14 5.30 5.33 86.38 0.46 5.76 16 5 N -0.61 -29.04 2.78 -726.92 -2.02 -31.06 16 6 C 0.17 7.87 7.61 127.77 0.97 8.84 16 7 C -0.26 -14.32 9.66 84.03 0.81 -13.51 16 8 H 0.06 3.50 7.85 -2.91 -0.02 3.48 16 9 C -0.05 -2.65 5.13 84.86 0.44 -2.21 16 10 N -0.93 -54.47 10.66 21.65 0.23 -54.23 16 11 Si 0.96 46.29 29.57 68.60 2.03 48.32 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 14 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 15 N -0.70 -24.98 4.41 -442.53 -1.95 -26.93 16 16 C 0.51 19.66 7.79 87.66 0.68 20.34 16 17 O -0.60 -28.29 15.23 -3.06 -0.05 -28.34 16 18 C -0.10 -2.86 5.98 29.85 0.18 -2.68 16 19 C -0.15 -4.44 5.13 -10.79 -0.06 -4.49 16 20 H 0.08 2.93 7.30 -2.39 -0.02 2.91 16 21 C -0.15 -3.42 9.90 30.60 0.30 -3.12 16 22 C -0.11 -2.49 5.57 -10.80 -0.06 -2.55 16 23 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 24 C -0.14 -3.19 5.85 -10.77 -0.06 -3.25 16 25 C -0.16 -2.76 10.25 30.60 0.31 -2.44 16 26 C -0.19 -4.09 10.26 30.62 0.31 -3.77 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 2.23 8.03 -2.38 -0.02 2.21 16 31 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 32 H 0.01 0.66 6.90 -2.39 -0.02 0.65 16 33 H 0.01 0.51 7.30 -2.38 -0.02 0.49 16 34 H 0.04 1.35 7.84 -2.38 -0.02 1.33 16 35 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.40 12.71 7.17 -92.71 -0.66 12.04 16 37 H 0.12 2.62 7.88 -2.39 -0.02 2.60 16 38 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.11 2.03 8.03 -2.38 -0.02 2.01 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -70.35 366.40 3.63 -66.72 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.28 Total: 27.38 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.11 Total: -1.86 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -3.74 Total: -112.22 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -70.35 3.63 -66.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.754 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds