Wall clock time and date at job start Tue Mar 31 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.46898 * 2 1 4 4 C 1.52992 * 109.47182 * 239.99693 * 2 1 3 5 5 N 1.46497 * 109.47483 * 185.00149 * 4 2 1 6 6 C 1.46501 * 119.99894 * 270.00429 * 5 4 2 7 7 C 1.36938 * 120.00254 * 89.99554 * 5 4 2 8 8 H 1.07998 * 120.00082 * 20.30856 * 7 5 4 9 9 C 1.38806 * 120.00236 * 200.30807 * 7 5 4 10 10 N 1.31617 * 120.00249 * 15.01976 * 9 7 5 11 11 Si 1.86809 * 120.00159 * 195.01521 * 9 7 5 12 12 H 1.48502 * 109.46718 * 85.00413 * 11 9 7 13 13 H 1.48496 * 109.46989 * 205.00226 * 11 9 7 14 14 H 1.48497 * 109.46712 * 325.00389 * 11 9 7 15 15 N 1.46506 * 109.46899 * 119.99610 * 2 1 3 16 16 C 1.34771 * 119.99951 * 274.99798 * 15 2 1 17 17 O 1.21282 * 120.00441 * 0.02562 * 16 15 2 18 18 C 1.50707 * 119.99923 * 179.97438 * 16 15 2 19 19 C 1.52994 * 109.47111 * 180.02562 * 18 16 15 20 20 H 1.09004 * 115.56475 * 29.31091 * 19 18 16 21 21 C 1.53007 * 117.49946 * 243.62458 * 19 18 16 22 22 C 1.53000 * 117.49966 * 175.00312 * 19 18 16 23 23 H 1.08998 * 117.51751 * 0.02562 * 22 19 18 24 24 C 1.52995 * 117.50117 * 214.97930 * 22 19 18 25 25 C 1.53000 * 117.50181 * 179.97438 * 24 22 19 26 26 C 1.53010 * 60.03146 * 252.49866 * 25 24 22 27 27 H 1.09002 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47186 * 300.00372 * 1 2 3 29 29 H 1.08998 * 109.47016 * 60.00363 * 1 2 3 30 30 H 1.09004 * 109.47489 * 304.99989 * 4 2 1 31 31 H 1.08997 * 109.47255 * 65.00195 * 4 2 1 32 32 H 1.09002 * 109.47252 * 95.09983 * 6 5 4 33 33 H 1.09005 * 109.46657 * 215.09967 * 6 5 4 34 34 H 1.08996 * 109.46987 * 335.10032 * 6 5 4 35 35 H 0.96997 * 120.00635 * 179.97438 * 10 9 7 36 36 H 0.97001 * 119.99618 * 95.00142 * 15 2 1 37 37 H 1.09000 * 109.46713 * 60.00427 * 18 16 15 38 38 H 1.08999 * 109.47010 * 300.00480 * 18 16 15 39 39 H 1.09004 * 117.49887 * 145.01924 * 21 19 18 40 40 H 1.08997 * 117.51533 * 359.97438 * 21 19 18 41 41 H 1.09003 * 115.54877 * 325.65815 * 24 22 19 42 42 H 1.09004 * 117.49533 * 359.97438 * 25 24 22 43 43 H 1.08995 * 117.50528 * 144.99872 * 25 24 22 44 44 H 1.08996 * 117.49808 * 107.50274 * 26 25 24 45 45 H 1.08999 * 117.49145 * 252.51876 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0849 -1.9159 -0.6021 8 1 3.5229 -2.8298 -0.4787 9 6 5.4002 -1.8456 -0.1643 10 7 5.9902 -0.6759 -0.0379 11 14 6.3332 -3.4113 0.2457 12 1 6.9257 -3.9735 -0.9945 13 1 7.4146 -3.1035 1.2156 14 1 5.4006 -4.4014 0.8417 15 7 2.0183 -0.6906 1.1963 16 6 2.1470 -0.0181 2.3571 17 8 1.8582 1.1585 2.4117 18 6 2.6487 -0.7287 3.5879 19 6 2.6998 0.2544 4.7591 20 1 1.9706 1.0639 4.7258 21 6 4.0713 0.5635 5.3628 22 6 3.0738 -0.3034 6.1338 23 1 3.2839 -1.3706 6.2041 24 6 2.3956 0.3177 7.3566 25 6 2.7691 -0.2405 8.7313 26 6 1.3973 -0.5492 8.1280 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7199 -1.2951 31 1 1.7517 -0.1584 -2.1369 32 1 4.6151 0.9370 -0.9770 33 1 5.2330 -0.2046 -2.1949 34 1 3.7754 0.7584 -2.5363 35 1 6.9092 -0.6267 0.2684 36 1 2.2490 -1.6317 1.1527 37 1 3.6479 -1.1212 3.3987 38 1 1.9758 -1.5504 3.8327 39 1 4.2444 1.5763 5.7267 40 1 4.9373 0.0662 4.9261 41 1 2.1864 1.3851 7.2866 42 1 3.4978 -1.0506 8.7645 43 1 2.8060 0.4596 9.5658 44 1 1.2237 -1.5620 7.7645 45 1 0.5317 -0.0517 8.5655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:18 Heat of formation + Delta-G solvation = 21.745067 kcal Electronic energy + Delta-G solvation = -22558.250863 eV Core-core repulsion = 19384.671164 eV Total energy + Delta-G solvation = -3173.579700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.32190 -38.24416 -36.33571 -35.33976 -33.88629 -31.43442 -30.33374 -28.45586 -26.16181 -25.60132 -23.60065 -22.50064 -22.09862 -21.11125 -20.06713 -19.82189 -19.41700 -16.90579 -16.36122 -15.64451 -15.44777 -15.08322 -14.87463 -14.43606 -13.82817 -13.53469 -13.30487 -13.20571 -12.91560 -12.75366 -12.16935 -12.01220 -11.74304 -11.65314 -11.41609 -11.36567 -11.25845 -11.11410 -10.97920 -10.86104 -10.71247 -10.62751 -10.38769 -10.23242 -10.05826 -9.82554 -9.63309 -9.36245 -8.99382 -8.57833 -8.17022 -6.80784 -5.74994 -3.19233 3.32057 3.39262 3.40254 3.41522 3.53338 3.98309 4.25338 4.44808 4.52010 4.81551 4.91272 5.11489 5.26658 5.27748 5.34686 5.36245 5.47993 5.52397 5.53781 5.69556 5.77848 5.85879 5.87318 5.97401 5.99921 6.01644 6.05695 6.10652 6.17554 6.19465 6.28589 6.35644 6.47685 6.56591 6.61359 6.74921 6.92622 7.36478 7.39683 7.68966 7.78497 8.33945 8.41644 9.07105 9.18869 9.83844 10.33422 11.29060 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004997 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.464839 B = 5602.365678 C = 6843.392945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.257 4.257 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.690 5.690 16 C 0.521 3.479 17 O -0.563 6.563 18 C -0.111 4.111 19 C -0.120 4.120 20 H 0.116 0.884 21 C -0.168 4.168 22 C -0.128 4.128 23 H 0.102 0.898 24 C -0.117 4.117 25 C -0.180 4.180 26 C -0.179 4.179 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.029 0.971 33 H 0.042 0.958 34 H -0.003 1.003 35 H 0.252 0.748 36 H 0.403 0.597 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 -0.832 9.904 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.339 5.339 16 C 0.307 3.693 17 O -0.443 6.443 18 C -0.151 4.151 19 C -0.138 4.138 20 H 0.134 0.866 21 C -0.205 4.205 22 C -0.146 4.146 23 H 0.120 0.880 24 C -0.135 4.135 25 C -0.217 4.217 26 C -0.216 4.216 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.062 0.938 36 H 0.238 0.762 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.170 0.034 9.947 12.872 hybrid contribution 0.891 -1.238 0.279 1.551 sum -7.279 -1.204 10.226 12.610 Atomic orbital electron populations 1.22153 0.97079 1.01125 1.01434 1.21769 0.91652 0.98356 0.87200 0.90707 1.21179 0.85896 0.97867 0.93703 1.43905 0.98935 1.22655 1.66532 1.20793 0.92869 0.90448 0.94042 1.19071 0.95940 0.89870 1.33733 0.91538 1.24928 0.98528 0.96097 0.99722 1.70094 1.12737 1.21714 1.49652 0.86421 0.79962 0.83165 0.77832 1.21515 1.21840 1.20593 1.45713 1.65296 1.14265 1.08631 1.20274 0.77111 0.87123 0.84786 1.90595 1.51888 1.16259 1.85586 1.21186 1.03432 0.98131 0.92381 1.22079 0.99548 1.01068 0.91156 0.86642 1.23095 0.93565 1.00551 1.03239 1.21864 1.03478 0.98287 0.91013 0.88003 1.21727 1.02335 0.98382 0.91052 1.22930 0.98696 1.03723 0.96366 1.22936 0.93130 1.01235 1.04327 0.93109 0.93010 0.92414 0.93401 0.93083 0.95288 0.93905 0.98457 0.93764 0.76189 0.88537 0.89419 0.88969 0.88535 0.87896 0.88849 0.89044 0.88790 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.09 16 2 C 0.12 2.24 2.88 -67.93 -0.20 2.04 16 3 H 0.07 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.74 5.36 -4.05 -0.02 2.72 16 5 N -0.60 -14.21 2.82 -181.13 -0.51 -14.72 16 6 C 0.16 3.99 9.02 59.85 0.54 4.53 16 7 C -0.26 -6.46 8.02 -15.06 -0.12 -6.58 16 8 H 0.07 1.61 7.86 -52.49 -0.41 1.20 16 9 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 10 N -0.90 -25.24 10.67 55.49 0.59 -24.65 16 11 Si 0.90 20.75 29.58 -169.99 -5.03 15.72 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 N -0.69 -13.26 4.49 -53.81 -0.24 -13.50 16 16 C 0.52 10.28 7.79 -10.98 -0.09 10.20 16 17 O -0.56 -12.80 15.23 5.56 0.08 -12.71 16 18 C -0.11 -1.80 5.98 -27.88 -0.17 -1.97 16 19 C -0.12 -1.83 5.13 -90.62 -0.47 -2.30 16 20 H 0.12 1.93 7.31 -51.93 -0.38 1.56 16 21 C -0.17 -2.41 9.90 -26.73 -0.26 -2.68 16 22 C -0.13 -1.63 5.57 -90.62 -0.50 -2.13 16 23 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 24 C -0.12 -1.31 5.85 -90.58 -0.53 -1.84 16 25 C -0.18 -1.73 10.25 -26.73 -0.27 -2.01 16 26 C -0.18 -1.76 10.26 -26.69 -0.27 -2.03 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 32 H 0.03 0.79 7.40 -51.93 -0.38 0.40 16 33 H 0.04 1.12 7.21 -51.93 -0.37 0.74 16 34 H 0.00 -0.07 7.83 -51.93 -0.41 -0.47 16 35 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.40 7.57 7.40 -40.82 -0.30 7.27 16 37 H 0.10 1.65 7.88 -51.93 -0.41 1.24 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.44 8.03 -51.93 -0.42 1.03 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -29.68 366.92 -9.76 -39.44 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.09 Total: 8.95 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.10 Total: -4.06 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.16 Total: -52.87 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.68 -9.76 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.187 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds