Wall clock time and date at job start Tue Mar 31 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00033 * 2 1 4 4 H 1.08005 * 120.00232 * 316.67302 * 3 2 1 5 5 C 1.38819 * 120.00164 * 136.66779 * 3 2 1 6 6 N 1.31611 * 120.00199 * 170.39799 * 5 3 2 7 7 Si 1.86796 * 119.99697 * 350.39584 * 5 3 2 8 8 H 1.48505 * 109.47201 * 92.38218 * 7 5 3 9 9 H 1.48495 * 109.47106 * 212.38088 * 7 5 3 10 10 H 1.48499 * 109.47320 * 332.38423 * 7 5 3 11 11 C 1.46491 * 120.00004 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47523 * 90.00261 * 11 2 1 13 13 N 1.46497 * 109.47539 * 180.02562 * 12 11 2 14 14 C 1.46501 * 119.99329 * 269.99652 * 13 12 11 15 15 C 1.34769 * 120.00434 * 89.99788 * 13 12 11 16 16 O 1.21287 * 120.00051 * 354.02438 * 15 13 12 17 17 C 1.50709 * 120.00172 * 174.02839 * 15 13 12 18 18 C 1.53002 * 109.46687 * 214.11677 * 17 15 13 19 19 C 1.52997 * 117.49387 * 104.18769 * 18 17 15 20 20 C 1.53002 * 117.49359 * 172.84126 * 18 17 15 21 21 C 1.52999 * 109.47089 * 94.11794 * 17 15 13 22 22 C 1.52994 * 117.49700 * 256.53183 * 21 17 15 23 23 C 1.52994 * 117.49792 * 187.87310 * 21 17 15 24 24 H 1.08995 * 109.47296 * 275.03023 * 1 2 3 25 25 H 1.09008 * 109.47000 * 35.02899 * 1 2 3 26 26 H 1.09005 * 109.47312 * 155.02589 * 1 2 3 27 27 H 0.96997 * 120.00320 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47589 * 329.99850 * 11 2 1 29 29 H 1.09008 * 109.47373 * 209.99917 * 11 2 1 30 30 H 1.09001 * 109.47392 * 59.99540 * 12 11 2 31 31 H 1.09008 * 109.46515 * 300.00181 * 12 11 2 32 32 H 1.09001 * 109.47548 * 271.75007 * 14 13 12 33 33 H 1.08997 * 109.47744 * 31.76034 * 14 13 12 34 34 H 1.09007 * 109.46907 * 151.75870 * 14 13 12 35 35 H 1.08993 * 109.46780 * 334.11806 * 17 15 13 36 36 H 1.08996 * 115.55257 * 318.51680 * 18 17 15 37 37 H 1.09002 * 117.49698 * 214.99407 * 19 18 17 38 38 H 1.09001 * 117.50738 * 0.02562 * 19 18 17 39 39 H 1.09002 * 117.50075 * 359.97438 * 20 18 17 40 40 H 1.09000 * 117.49526 * 144.97407 * 20 18 17 41 41 H 1.09000 * 115.55137 * 42.20466 * 21 17 15 42 42 H 1.08998 * 117.50163 * 0.02562 * 22 21 17 43 43 H 1.09007 * 117.49722 * 145.02258 * 22 21 17 44 44 H 1.08996 * 117.50215 * 214.98244 * 23 21 17 45 45 H 1.09006 * 117.49739 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.8304 1.9938 -0.6418 5 6 3.2540 1.3498 0.8250 6 7 4.0232 2.4095 0.6922 7 14 3.6483 0.0663 2.1236 8 1 4.5913 -0.9336 1.5612 9 1 4.2702 0.7266 3.2993 10 1 2.3969 -0.6146 2.5427 11 6 2.1974 -1.2686 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 7 3.1845 -2.9787 -1.4438 14 6 4.6495 -2.9792 -1.4436 15 6 2.5102 -4.1456 -1.4445 16 8 1.3023 -4.1481 -1.3353 17 6 3.2572 -5.4475 -1.5809 18 6 2.4054 -6.4438 -2.3701 19 6 2.7921 -6.7049 -3.8272 20 6 3.0544 -7.7727 -2.7623 21 6 3.5499 -6.0156 -0.1907 22 6 4.9755 -5.8713 0.3455 23 6 4.4621 -7.2408 -0.1061 24 1 -0.3633 0.0901 1.0236 25 1 -0.3633 0.8416 -0.5899 26 1 -0.3634 -0.9316 -0.4339 27 1 4.7946 2.5242 1.2688 28 1 1.6084 -2.0286 0.5129 29 1 3.1499 -1.1386 0.5133 30 1 3.0416 -0.9499 -1.9568 31 1 1.5000 -1.8398 -1.9571 32 1 5.0130 -2.9474 -2.4708 33 1 5.0131 -2.1059 -0.9023 34 1 5.0125 -3.8849 -0.9578 35 1 4.1955 -5.2744 -2.1076 36 1 1.3444 -6.4560 -2.1210 37 1 1.9853 -6.8890 -4.5367 38 1 3.6534 -6.1673 -4.2235 39 1 4.0883 -7.9369 -2.4585 40 1 2.4204 -8.6593 -2.7707 41 1 2.7326 -5.9460 0.5272 42 1 5.7048 -5.3714 -0.2919 43 1 5.0962 -5.7072 1.4163 44 1 4.2454 -7.9772 0.6677 45 1 4.8535 -7.6425 -1.0408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699001503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:39 Heat of formation + Delta-G solvation = 47.200765 kcal Electronic energy + Delta-G solvation = -23145.600599 eV Core-core repulsion = 19973.124741 eV Total energy + Delta-G solvation = -3172.475858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -40.31788 -38.03524 -36.31771 -36.07018 -34.82383 -31.68241 -30.25785 -28.51005 -26.55272 -25.87476 -23.59190 -23.07161 -22.09533 -21.63858 -20.98268 -20.47542 -18.88660 -17.21335 -16.76016 -16.13333 -15.79066 -15.36905 -15.01434 -14.82337 -14.46101 -13.88394 -13.67737 -13.20897 -13.03344 -12.86820 -12.73015 -12.56099 -12.28456 -12.07375 -11.72222 -11.66717 -11.56540 -11.52273 -11.26375 -10.98105 -10.69280 -10.58733 -10.48740 -10.43364 -10.41080 -9.93462 -9.79491 -9.48328 -9.34932 -8.60529 -8.39592 -6.70494 -5.98579 -3.52915 2.80383 3.20644 3.24868 3.42589 3.50092 3.50985 3.78327 4.33147 4.48428 4.54180 4.60239 4.78029 4.82193 4.97017 5.02178 5.08346 5.18938 5.28717 5.30944 5.35311 5.39006 5.53244 5.54110 5.56608 5.69245 5.74394 5.79169 5.86727 5.90743 5.96419 6.04575 6.10877 6.20861 6.28688 6.39345 6.50781 6.58339 6.75570 6.80507 6.95607 7.69499 8.09718 8.40113 8.43777 8.97974 9.68133 10.13076 11.15992 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.005058 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.537008 B = 5534.639552 C = 6114.230814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.614 5.614 3 C -0.269 4.269 4 H 0.079 0.921 5 C 0.035 3.965 6 N -0.909 5.909 7 Si 0.896 3.104 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.271 1.271 11 C 0.129 3.871 12 C 0.097 3.903 13 N -0.609 5.609 14 C 0.068 3.932 15 C 0.521 3.479 16 O -0.539 6.539 17 C -0.045 4.045 18 C -0.131 4.131 19 C -0.182 4.182 20 C -0.177 4.177 21 C -0.139 4.139 22 C -0.184 4.184 23 C -0.172 4.172 24 H 0.009 0.991 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -20.347 -5.462 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.338 5.338 3 C -0.398 4.398 4 H 0.097 0.903 5 C -0.165 4.165 6 N -0.551 5.551 7 Si 0.728 3.272 8 H -0.215 1.215 9 H -0.232 1.232 10 H -0.196 1.196 11 C 0.002 3.998 12 C -0.027 4.027 13 N -0.342 5.342 14 C -0.076 4.076 15 C 0.308 3.692 16 O -0.416 6.416 17 C -0.067 4.067 18 C -0.149 4.149 19 C -0.219 4.219 20 C -0.214 4.214 21 C -0.157 4.157 22 C -0.221 4.221 23 C -0.208 4.208 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.614 -20.194 -5.336 21.050 hybrid contribution 0.526 -0.499 0.752 1.044 sum 3.140 -20.693 -4.584 21.426 Atomic orbital electron populations 1.21089 0.84130 0.98751 0.97914 1.43977 1.01053 1.01620 1.87186 1.18858 1.10295 0.91474 1.19214 0.90310 1.25587 0.97979 0.96089 0.96873 1.69768 1.16508 1.28670 1.40108 0.86655 0.78002 0.80779 0.81729 1.21465 1.23194 1.19624 1.21469 0.96214 0.88248 0.93835 1.22380 0.96783 0.82537 1.00982 1.47978 1.06884 1.06628 1.72738 1.22000 0.80166 1.03745 1.01656 1.20327 0.87778 0.84839 0.76209 1.90663 1.14329 1.87133 1.49492 1.20426 0.98690 0.92189 0.95373 1.22005 1.00365 0.96442 0.96105 1.23037 1.03429 1.03365 0.92027 1.23085 1.01983 0.92858 1.03475 1.22001 0.94620 1.02545 0.96569 1.23164 0.96527 1.00402 1.01969 1.23084 1.03480 0.91137 1.03140 0.97243 0.94216 0.94753 0.92684 0.93883 0.93424 0.90008 0.90672 0.92753 0.90416 0.90902 0.89354 0.86541 0.88734 0.88942 0.88422 0.88758 0.87209 0.88371 0.88429 0.88632 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.75 10.69 59.84 0.64 3.39 16 2 N -0.61 -15.36 2.45 -181.12 -0.44 -15.80 16 3 C -0.27 -7.67 9.99 -15.06 -0.15 -7.82 16 4 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 5 C 0.04 1.02 5.45 -17.43 -0.09 0.92 16 6 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 7 Si 0.90 22.90 24.66 -169.99 -4.19 18.71 16 8 H -0.29 -6.90 6.77 56.52 0.38 -6.51 16 9 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 10 H -0.27 -7.00 6.94 56.52 0.39 -6.61 16 11 C 0.13 2.96 4.59 -4.05 -0.02 2.94 16 12 C 0.10 1.94 5.70 -4.04 -0.02 1.91 16 13 N -0.61 -10.25 2.87 -181.56 -0.52 -10.77 16 14 C 0.07 0.91 9.77 59.85 0.58 1.49 16 15 C 0.52 8.60 6.66 -10.98 -0.07 8.53 16 16 O -0.54 -10.76 15.74 5.55 0.09 -10.68 16 17 C -0.05 -0.55 1.68 -91.77 -0.15 -0.70 16 18 C -0.13 -1.49 4.85 -90.62 -0.44 -1.92 16 19 C -0.18 -1.74 10.18 -26.70 -0.27 -2.01 16 20 C -0.18 -1.52 9.35 -26.69 -0.25 -1.77 16 21 C -0.14 -1.56 4.96 -90.63 -0.45 -2.01 16 22 C -0.18 -1.77 9.22 -26.70 -0.25 -2.02 16 23 C -0.17 -1.46 9.33 -26.70 -0.25 -1.71 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.04 0.82 8.08 -51.92 -0.42 0.40 16 26 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.05 1.16 3.01 -51.92 -0.16 1.00 16 30 H 0.08 1.67 8.07 -51.93 -0.42 1.25 16 31 H 0.07 1.55 7.51 -51.92 -0.39 1.16 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 34 H 0.07 0.82 3.64 -51.93 -0.19 0.63 16 35 H 0.09 0.93 6.31 -51.93 -0.33 0.61 16 36 H 0.12 1.55 7.58 -51.93 -0.39 1.15 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.10 0.73 5.51 -51.93 -0.29 0.45 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.10 0.86 6.45 -51.93 -0.33 0.52 16 43 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.73 5.54 -51.93 -0.29 0.45 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -32.47 350.28 -7.64 -40.10 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.43 Total: 0.84 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.19 Total: -0.78 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.19 Total: -53.48 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.19 Total: 18.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.47 -7.64 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699001503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.305 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.88 seconds