Wall clock time and date at job start Tue Mar 31 2020 02:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99695 * 3 2 1 5 5 H 1.48497 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99972 * 3 2 1 7 7 C 1.40167 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.39863 * 119.99790 * 0.27846 * 7 2 1 10 10 N 1.31576 * 125.28932 * 179.71916 * 9 7 2 11 11 C 1.31268 * 115.82424 * 179.97438 * 10 9 7 12 12 C 1.48138 * 122.48382 * 180.02562 * 11 10 9 13 13 C 1.40544 * 119.73664 * 179.69872 * 12 11 10 14 14 C 1.35736 * 120.86218 * 179.77650 * 13 12 11 15 15 C 1.40713 * 120.00211 * 0.47370 * 14 13 12 16 16 C 1.40471 * 121.05762 * 179.80682 * 15 14 13 17 17 C 1.36156 * 119.71736 * 179.97438 * 16 15 14 18 18 C 1.39359 * 121.00896 * 0.02562 * 17 16 15 19 19 C 1.36102 * 120.95282 * 0.02562 * 18 17 16 20 20 C 1.40650 * 119.65927 * 359.97438 * 19 18 17 21 21 C 1.38391 * 119.73196 * 359.97438 * 12 11 10 22 22 C 1.37270 * 115.03638 * 0.02562 * 11 10 9 23 23 S 1.71006 * 109.07806 * 359.76605 * 22 11 10 24 24 H 0.96996 * 120.00367 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.56515 * 0.02562 * 13 12 11 26 26 H 1.08000 * 120.00017 * 180.28255 * 14 13 12 27 27 H 1.08004 * 120.14721 * 359.96325 * 16 15 14 28 28 H 1.08005 * 119.49908 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.52755 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.16973 * 180.02562 * 19 18 17 31 31 H 1.07999 * 120.27833 * 0.02562 * 21 12 11 32 32 H 1.08002 * 125.46333 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0082 -1.2139 0.0005 8 1 3.0882 -1.2138 0.0001 9 6 1.3089 -2.4251 -0.0048 10 7 1.8590 -3.6204 -0.0101 11 6 1.0246 -4.6338 -0.0141 12 6 1.4837 -6.0422 -0.0197 13 6 0.5394 -7.0832 -0.0173 14 6 0.9345 -8.3817 -0.0269 15 6 2.3052 -8.7001 -0.0293 16 6 2.7388 -10.0362 -0.0351 17 6 4.0719 -10.3132 -0.0379 18 6 5.0178 -9.2898 -0.0346 19 6 4.6358 -7.9835 -0.0279 20 6 3.2673 -7.6585 -0.0248 21 6 2.8389 -6.3224 -0.0215 22 6 -0.3048 -4.2917 -0.0126 23 16 -0.4434 -2.5874 0.0008 24 1 -0.4850 0.8400 0.0004 25 1 -0.5144 -6.8467 -0.0118 26 1 0.1970 -9.1706 -0.0295 27 1 2.0179 -10.8404 -0.0372 28 1 4.4014 -11.3417 -0.0428 29 1 6.0692 -9.5367 -0.0364 30 1 5.3796 -7.2004 -0.0257 31 1 3.5610 -5.5193 -0.0184 32 1 -1.1308 -4.9875 -0.0156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000818321.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:38 Heat of formation + Delta-G solvation = 53.710861 kcal Electronic energy + Delta-G solvation = -17695.223364 eV Core-core repulsion = 14903.706745 eV Total energy + Delta-G solvation = -2791.516619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.96388 -37.76732 -35.79443 -34.12079 -32.38857 -30.66937 -29.12765 -28.27312 -26.40154 -23.64284 -22.90133 -21.73881 -21.38856 -18.80653 -17.81612 -16.91068 -16.38755 -16.05966 -15.26794 -14.88140 -14.31991 -14.21269 -13.44176 -13.37197 -13.00985 -12.96231 -12.71875 -12.54678 -12.21141 -11.88611 -11.49704 -11.47711 -10.93432 -10.83748 -10.68882 -10.56100 -10.35259 -9.80512 -9.58556 -9.54860 -8.44165 -7.94721 -7.85474 -7.71458 -7.13612 -6.85663 -4.79757 0.81280 1.24376 2.30435 2.51924 2.90110 2.93916 2.94434 3.32469 3.43257 3.64395 3.94226 4.11855 4.57091 4.87201 5.03825 5.13061 5.18664 5.27753 5.34174 5.54863 5.63010 5.75048 5.79991 6.06907 6.24375 6.38132 6.44783 6.54359 6.62722 6.66730 6.76885 6.82915 6.94767 7.13675 7.26841 7.41153 7.47609 7.83740 8.25986 8.33545 9.64722 9.76119 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.031281 B = 0.003980 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.892093 B = 7032.677012 C = 7917.720342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.055 3.945 3 Si 0.943 3.057 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.375 4.375 8 H 0.103 0.897 9 C 0.204 3.796 10 N -0.590 5.590 11 C 0.130 3.870 12 C 0.012 3.988 13 C -0.094 4.094 14 C -0.120 4.120 15 C -0.061 4.061 16 C -0.106 4.106 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.049 4.049 21 C -0.090 4.090 22 C -0.447 4.447 23 S 0.123 5.877 24 H 0.300 0.700 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 -9.591 -0.033 10.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.417 4.417 8 H 0.121 0.879 9 C -0.050 4.050 10 N -0.311 5.311 11 C -0.009 4.009 12 C 0.009 3.991 13 C -0.113 4.113 14 C -0.138 4.138 15 C -0.061 4.061 16 C -0.124 4.124 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.119 4.119 20 C -0.049 4.049 21 C -0.110 4.110 22 C -0.592 4.592 23 S 0.384 5.616 24 H 0.113 0.887 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.468 -8.716 -0.022 9.059 hybrid contribution 0.391 -0.337 -0.014 0.516 sum 2.859 -9.053 -0.036 9.493 Atomic orbital electron populations 1.68754 1.07724 1.31045 1.33531 1.26174 0.95113 1.02698 0.92712 0.85741 0.79534 0.77698 0.80421 1.18404 1.19843 1.18402 1.18949 0.95816 0.87369 1.39594 0.87869 1.23818 0.91382 0.93982 0.95796 1.67244 1.34630 0.97050 1.32191 1.18709 0.88666 0.91609 1.01964 1.18495 0.92556 0.91249 0.96817 1.20936 0.99732 0.91971 0.98651 1.20793 0.94263 0.96375 1.02414 1.18088 0.93364 0.93018 1.01636 1.20955 0.95985 0.95107 1.00363 1.20733 0.93248 0.98884 1.01905 1.20741 0.99257 0.92900 1.01728 1.21090 0.94721 0.96716 0.99363 1.18129 0.93160 0.93208 1.00402 1.21496 0.95934 0.94615 0.98952 1.26459 0.99168 1.04396 1.29142 1.84220 1.11461 0.93974 1.71903 0.88735 0.85875 0.85976 0.86145 0.86612 0.86488 0.85711 0.84435 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.40 10.64 55.56 0.59 -17.81 16 2 C 0.06 1.27 5.50 -17.30 -0.10 1.18 16 3 Si 0.94 17.15 29.56 -169.99 -5.03 12.12 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.37 -9.56 9.44 -38.25 -0.36 -9.92 16 8 H 0.10 2.53 7.85 -52.49 -0.41 2.12 16 9 C 0.20 5.52 7.11 -17.05 -0.12 5.39 16 10 N -0.59 -15.85 9.96 -9.51 -0.09 -15.94 16 11 C 0.13 3.22 6.65 -84.40 -0.56 2.66 16 12 C 0.01 0.25 5.87 -104.91 -0.62 -0.37 16 13 C -0.09 -1.70 9.38 -39.61 -0.37 -2.07 16 14 C -0.12 -1.88 9.73 -39.54 -0.38 -2.26 16 15 C -0.06 -0.97 5.75 -106.76 -0.61 -1.59 16 16 C -0.11 -1.39 9.76 -39.49 -0.39 -1.78 16 17 C -0.13 -1.56 9.95 -39.91 -0.40 -1.96 16 18 C -0.13 -1.61 9.95 -39.93 -0.40 -2.01 16 19 C -0.10 -1.48 9.77 -39.44 -0.39 -1.87 16 20 C -0.05 -0.85 5.74 -106.85 -0.61 -1.46 16 21 C -0.09 -1.80 9.37 -38.74 -0.36 -2.17 16 22 C -0.45 -10.79 10.40 30.38 0.32 -10.48 16 23 S 0.12 3.10 20.12 -107.50 -2.16 0.94 16 24 H 0.30 6.31 8.29 -40.82 -0.34 5.97 16 25 H 0.12 2.07 6.54 -52.48 -0.34 1.73 16 26 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.14 2.84 7.64 -52.49 -0.40 2.44 16 32 H 0.13 2.87 6.80 -52.49 -0.36 2.51 16 LS Contribution 293.37 15.07 4.42 4.42 Total: -1.00 -28.27 293.37 -10.38 -38.65 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -2.76 Total: 6.31 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -5.35 Total: -28.69 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.50 Total: -33.75 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.16 Total: 0.94 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.27 -10.38 -38.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000818321.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.365 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds