Wall clock time and date at job start Tue Mar 31 2020 02:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86803 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99695 * 3 2 1 5 5 H 1.48497 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99972 * 3 2 1 7 7 C 1.40167 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.39863 * 119.99790 * 0.27846 * 7 2 1 10 10 N 1.31576 * 125.28932 * 179.71916 * 9 7 2 11 11 C 1.31268 * 115.82424 * 179.97438 * 10 9 7 12 12 C 1.48138 * 122.48382 * 180.02562 * 11 10 9 13 13 C 1.40544 * 119.73664 * 179.69872 * 12 11 10 14 14 C 1.35736 * 120.86218 * 179.77650 * 13 12 11 15 15 C 1.40713 * 120.00211 * 0.47370 * 14 13 12 16 16 C 1.40471 * 121.05762 * 179.80682 * 15 14 13 17 17 C 1.36156 * 119.71736 * 179.97438 * 16 15 14 18 18 C 1.39359 * 121.00896 * 0.02562 * 17 16 15 19 19 C 1.36102 * 120.95282 * 0.02562 * 18 17 16 20 20 C 1.40650 * 119.65927 * 359.97438 * 19 18 17 21 21 C 1.38391 * 119.73196 * 359.97438 * 12 11 10 22 22 C 1.37270 * 115.03638 * 0.02562 * 11 10 9 23 23 S 1.71006 * 109.07806 * 359.76605 * 22 11 10 24 24 H 0.96996 * 120.00367 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.56515 * 0.02562 * 13 12 11 26 26 H 1.08000 * 120.00017 * 180.28255 * 14 13 12 27 27 H 1.08004 * 120.14721 * 359.96325 * 16 15 14 28 28 H 1.08005 * 119.49908 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.52755 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.16973 * 180.02562 * 19 18 17 31 31 H 1.07999 * 120.27833 * 0.02562 * 21 12 11 32 32 H 1.08002 * 125.46333 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0082 -1.2139 0.0005 8 1 3.0882 -1.2138 0.0001 9 6 1.3089 -2.4251 -0.0048 10 7 1.8590 -3.6204 -0.0101 11 6 1.0246 -4.6338 -0.0141 12 6 1.4837 -6.0422 -0.0197 13 6 0.5394 -7.0832 -0.0173 14 6 0.9345 -8.3817 -0.0269 15 6 2.3052 -8.7001 -0.0293 16 6 2.7388 -10.0362 -0.0351 17 6 4.0719 -10.3132 -0.0379 18 6 5.0178 -9.2898 -0.0346 19 6 4.6358 -7.9835 -0.0279 20 6 3.2673 -7.6585 -0.0248 21 6 2.8389 -6.3224 -0.0215 22 6 -0.3048 -4.2917 -0.0126 23 16 -0.4434 -2.5874 0.0008 24 1 -0.4850 0.8400 0.0004 25 1 -0.5144 -6.8467 -0.0118 26 1 0.1970 -9.1706 -0.0295 27 1 2.0179 -10.8404 -0.0372 28 1 4.4014 -11.3417 -0.0428 29 1 6.0692 -9.5367 -0.0364 30 1 5.3796 -7.2004 -0.0257 31 1 3.5610 -5.5193 -0.0184 32 1 -1.1308 -4.9875 -0.0156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000818321.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:37 Heat of formation + Delta-G solvation = 39.519926 kcal Electronic energy + Delta-G solvation = -17695.838729 eV Core-core repulsion = 14903.706745 eV Total energy + Delta-G solvation = -2792.131984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22010 -39.50971 -37.15910 -35.92543 -33.61584 -32.17474 -30.48689 -29.78373 -28.24706 -25.19864 -24.15619 -23.24334 -22.68015 -20.44486 -19.74640 -18.16927 -17.78050 -17.56357 -16.94746 -16.36545 -15.61112 -15.53450 -14.98912 -14.82001 -14.36694 -14.31416 -14.23327 -14.07658 -13.72831 -13.52758 -13.03367 -12.80183 -12.39586 -12.23612 -12.07001 -12.03700 -11.67156 -11.39296 -11.38375 -10.88501 -10.00052 -9.83912 -9.73875 -9.08228 -8.92198 -8.50951 -6.74422 -0.44245 -0.03064 0.65362 1.14649 1.38613 1.48289 1.50057 1.55252 1.93951 1.97168 2.17377 2.52012 3.10620 3.38060 3.73363 3.76555 3.98031 4.07653 4.25639 4.31250 4.46547 4.47403 4.61200 4.75454 4.90805 4.93839 5.04332 5.05367 5.19065 5.35187 5.37475 5.56723 5.60731 5.69342 5.78300 5.92429 5.95972 6.14662 6.36912 6.41132 7.72916 7.99477 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.031281 B = 0.003980 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.892093 B = 7032.677012 C = 7917.720342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.021 3.979 3 Si 1.020 2.980 4 H -0.256 1.256 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.401 4.401 8 H 0.102 0.898 9 C 0.169 3.831 10 N -0.621 5.621 11 C 0.119 3.881 12 C -0.026 4.026 13 C -0.114 4.114 14 C -0.100 4.100 15 C -0.074 4.074 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.068 4.068 21 C -0.103 4.103 22 C -0.463 4.463 23 S 0.108 5.892 24 H 0.313 0.687 25 H 0.129 0.871 26 H 0.164 0.836 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -11.822 -0.047 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.199 4.199 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.179 1.179 6 H -0.180 1.180 7 C -0.444 4.444 8 H 0.120 0.880 9 C -0.083 4.083 10 N -0.344 5.344 11 C -0.019 4.019 12 C -0.028 4.028 13 C -0.133 4.133 14 C -0.118 4.118 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.138 4.138 18 C -0.131 4.131 19 C -0.145 4.145 20 C -0.068 4.068 21 C -0.123 4.123 22 C -0.607 4.607 23 S 0.368 5.632 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.181 0.819 27 H 0.174 0.826 28 H 0.175 0.825 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.364 -10.984 -0.037 11.488 hybrid contribution 0.245 0.154 -0.011 0.289 sum 3.609 -10.830 -0.047 11.416 Atomic orbital electron populations 1.68782 1.09080 1.32885 1.31921 1.27215 0.95947 1.05575 0.91209 0.84646 0.78301 0.72830 0.80481 1.17973 1.17908 1.17961 1.19338 0.96140 0.88320 1.40560 0.88008 1.24319 0.92544 0.94759 0.96669 1.67302 1.35697 0.97642 1.33777 1.19299 0.88934 0.93056 1.00586 1.18604 0.93882 0.90282 1.00053 1.20974 0.99360 0.92408 1.00592 1.21216 0.95169 0.96104 0.99296 1.18466 0.93278 0.94255 1.01471 1.21353 0.97497 0.94263 0.99304 1.21273 0.92648 1.00700 0.99187 1.21210 1.01400 0.91834 0.98628 1.21253 0.93735 0.98397 1.01075 1.18311 0.94993 0.92266 1.01195 1.21403 0.95134 0.95724 1.00065 1.26596 0.99665 1.04057 1.30421 1.83907 1.10712 0.95270 1.73287 0.87329 0.85340 0.81871 0.82613 0.82517 0.83163 0.85431 0.86940 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.10 10.64 21.87 0.23 -37.87 16 2 C 0.02 0.97 5.50 85.32 0.47 1.44 16 3 Si 1.02 34.65 29.56 68.60 2.03 36.67 16 4 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 5 H -0.26 -7.89 7.11 99.48 0.71 -7.19 16 6 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 7 C -0.40 -21.42 9.44 23.13 0.22 -21.20 16 8 H 0.10 5.26 7.85 -2.91 -0.02 5.24 16 9 C 0.17 9.73 7.11 85.12 0.61 10.34 16 10 N -0.62 -35.91 9.96 -183.99 -1.83 -37.74 16 11 C 0.12 6.36 6.65 41.63 0.28 6.63 16 12 C -0.03 -1.17 5.87 -20.05 -0.12 -1.28 16 13 C -0.11 -4.21 9.38 22.25 0.21 -4.00 16 14 C -0.10 -2.95 9.73 22.29 0.22 -2.73 16 15 C -0.07 -2.23 5.75 -21.25 -0.12 -2.35 16 16 C -0.11 -2.31 9.76 22.33 0.22 -2.09 16 17 C -0.12 -2.27 9.95 22.05 0.22 -2.05 16 18 C -0.11 -2.42 9.95 22.04 0.22 -2.20 16 19 C -0.13 -3.62 9.77 22.36 0.22 -3.40 16 20 C -0.07 -2.36 5.74 -21.31 -0.12 -2.48 16 21 C -0.10 -4.42 9.37 22.81 0.21 -4.20 16 22 C -0.46 -23.66 10.40 67.59 0.70 -22.95 16 23 S 0.11 5.73 20.12 -56.49 -1.14 4.60 16 24 H 0.31 13.07 8.29 -92.71 -0.77 12.31 16 25 H 0.13 4.42 6.54 -2.91 -0.02 4.40 16 26 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 27 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.11 5.17 7.64 -2.91 -0.02 5.14 16 32 H 0.15 6.87 6.80 -2.91 -0.02 6.86 16 Total: -1.00 -66.63 293.37 3.87 -62.76 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.15 Total: 24.12 kcal Atomic # 6 Polarization: -55.97 SS G_CDS: 3.43 Total: -52.54 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.60 Total: -75.61 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.03 Total: 36.67 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.14 Total: 4.60 kcal Total: -66.63 3.87 -62.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000818321.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.283 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds