Wall clock time and date at job start Tue Mar 31 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29310 * 1 3 3 Si 1.86811 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47108 * 270.00052 * 3 2 1 5 5 H 1.48499 * 109.47081 * 29.99861 * 3 2 1 6 6 H 1.48499 * 109.47042 * 149.99861 * 3 2 1 7 7 C 1.46781 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.33335 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00009 * 179.97438 * 9 7 2 11 11 O 1.21473 * 119.99880 * 359.97438 * 10 9 7 12 12 C 1.47695 * 120.00295 * 180.02562 * 10 9 7 13 13 C 1.39671 * 120.14682 * 359.72074 * 12 10 9 14 14 C 1.37936 * 119.84189 * 180.27674 * 13 12 10 15 15 N 1.48021 * 119.92050 * 180.02562 * 14 13 12 16 16 O 1.26742 * 119.99727 * 179.97438 * 15 14 13 17 17 O 1.26745 * 119.99819 * 359.97438 * 15 14 13 18 18 C 1.38377 * 120.15137 * 359.97438 * 14 13 12 19 19 C 1.38378 * 120.31256 * 0.02562 * 18 14 13 20 20 N 1.48019 * 119.92509 * 180.02562 * 19 18 14 21 21 O 1.26745 * 120.00057 * 179.97438 * 20 19 18 22 22 O 1.26751 * 119.99838 * 359.97438 * 20 19 18 23 23 C 1.37926 * 120.15337 * 359.97438 * 19 18 14 24 24 H 0.97007 * 120.00746 * 359.97438 * 1 2 3 25 25 H 0.96994 * 119.99439 * 0.02562 * 9 7 2 26 26 H 1.08004 * 120.08224 * 0.25501 * 13 12 10 27 27 H 1.07999 * 119.84243 * 180.02562 * 18 14 13 28 28 H 1.07998 * 120.08019 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6179 0.0000 4 1 2.4745 2.0466 -1.4001 5 1 1.4245 2.6528 0.7000 6 1 3.5246 1.4404 0.7001 7 6 2.0271 -1.2711 0.0006 8 1 3.1071 -1.2711 0.0010 9 7 1.3605 -2.4259 0.0006 10 6 2.0344 -3.5930 0.0006 11 8 3.2491 -3.5929 0.0001 12 6 1.2960 -4.8721 0.0000 13 6 -0.1007 -4.8758 0.0053 14 6 -0.7838 -6.0741 0.0106 15 7 -2.2640 -6.0801 0.0156 16 8 -2.8932 -7.1803 0.0199 17 8 -2.9022 -4.9850 0.0157 18 6 -0.0886 -7.2706 0.0100 19 6 1.2951 -7.2743 0.0047 20 7 2.0301 -8.5591 0.0035 21 8 3.2976 -8.5641 -0.0018 22 8 1.3920 -9.6542 0.0078 23 6 1.9911 -6.0835 -0.0006 24 1 -0.4851 0.8400 0.0004 25 1 0.3905 -2.4258 -0.0002 26 1 -0.6445 -3.9427 0.0057 27 1 -0.6286 -8.2059 0.0136 28 1 3.0711 -6.0878 -0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002070821.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:53 Heat of formation + Delta-G solvation = 11.255794 kcal Electronic energy + Delta-G solvation = -20859.703633 eV Core-core repulsion = 17076.910795 eV Total energy + Delta-G solvation = -3782.792838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29405 -40.44676 -39.47854 -37.95110 -35.53809 -35.47362 -34.84941 -32.85315 -32.24219 -31.81960 -26.92760 -26.77528 -25.89485 -23.53138 -22.28180 -20.70160 -19.45211 -18.93784 -18.71223 -18.16383 -17.47106 -16.91915 -16.74338 -16.65673 -16.35393 -15.54925 -15.35515 -14.34509 -14.29417 -13.49536 -13.05550 -12.74445 -12.56440 -12.40611 -11.70844 -11.52479 -11.51002 -11.40326 -11.20369 -11.11064 -10.94344 -10.94150 -10.84105 -10.34283 -10.14470 -9.58072 -9.09194 -8.98478 -7.57397 -4.25354 -0.64263 -0.55902 0.59272 0.84343 1.10799 1.32286 2.48435 2.75997 2.76634 2.81550 3.44244 3.66420 3.88211 4.21869 4.25935 4.47804 4.49583 4.56549 4.65821 5.24507 5.26268 5.57849 5.64938 5.84318 5.91076 6.14402 6.28587 7.10824 7.12454 7.14408 7.58114 8.28604 8.58679 9.40153 9.54455 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.005030 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.916879 B = 5565.428183 C = 7129.499038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.275 4.275 8 H 0.132 0.868 9 N -0.486 5.486 10 C 0.403 3.597 11 O -0.601 6.601 12 C -0.077 4.077 13 C -0.040 4.040 14 C 0.002 3.998 15 N 0.003 4.997 16 O -0.160 6.160 17 O -0.148 6.148 18 C -0.053 4.053 19 C -0.012 4.012 20 N 0.005 4.995 21 O -0.152 6.152 22 O -0.162 6.162 23 C 0.018 3.982 24 H 0.302 0.698 25 H 0.394 0.606 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 -3.350 0.004 4.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.407 4.407 8 H 0.150 0.850 9 N -0.111 5.111 10 C 0.199 3.801 11 O -0.492 6.492 12 C -0.085 4.085 13 C -0.063 4.063 14 C -0.083 4.083 15 N 0.505 4.495 16 O -0.366 6.366 17 O -0.356 6.356 18 C -0.076 4.076 19 C -0.097 4.097 20 N 0.506 4.494 21 O -0.359 6.359 22 O -0.367 6.367 23 C -0.003 4.003 24 H 0.114 0.886 25 H 0.229 0.771 26 H 0.182 0.818 27 H 0.191 0.809 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.262 -2.489 0.008 2.791 hybrid contribution -0.722 0.298 -0.007 0.781 sum -1.984 -2.191 0.001 2.956 Atomic orbital electron populations 1.68620 1.08306 1.32388 1.33595 1.27402 0.95364 1.01605 0.94347 0.85509 0.80002 0.77396 0.79881 1.18843 1.19631 1.17763 1.21459 0.94904 0.81550 1.42784 0.85035 1.41306 1.10098 1.05711 1.54002 1.16754 0.87506 0.81869 0.93971 1.90643 1.11962 1.85243 1.61339 1.20054 0.90885 0.95430 1.02087 1.21489 0.94234 0.97567 0.92995 1.20027 0.78384 0.95340 1.14538 1.46921 1.03582 1.01738 0.97266 1.95478 1.69702 1.17426 1.53985 1.95520 1.68717 1.17940 1.53433 1.20258 0.91619 0.99217 0.96459 1.20017 0.90803 0.83095 1.15813 1.46864 1.02208 1.03012 0.97269 1.95509 0.91547 1.95164 1.53659 1.95477 1.69095 1.17989 1.54158 1.21384 1.03569 0.88095 0.87264 0.88557 0.77094 0.81761 0.80879 0.80641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -16.39 13.09 56.00 0.73 -15.66 15 2 C 0.03 0.65 5.69 -15.16 -0.09 0.56 15 3 Si 0.95 15.76 29.65 -169.99 -5.04 10.72 15 4 H -0.26 -4.37 7.11 56.52 0.40 -3.96 15 5 H -0.27 -4.39 7.11 56.52 0.40 -3.98 15 6 H -0.25 -4.28 7.11 56.52 0.40 -3.88 15 7 C -0.27 -6.09 9.92 -13.45 -0.13 -6.22 15 8 H 0.13 3.06 7.19 -52.48 -0.38 2.68 15 9 N -0.49 -10.15 5.12 -10.62 -0.05 -10.20 15 10 C 0.40 8.43 7.70 -12.40 -0.10 8.34 15 11 O -0.60 -14.62 15.86 5.39 0.09 -14.54 15 12 C -0.08 -1.30 5.87 -104.97 -0.62 -1.92 15 13 C -0.04 -0.62 9.06 -39.16 -0.35 -0.97 15 14 C 0.00 0.03 6.86 -80.00 -0.55 -0.52 15 15 N 0.00 0.04 4.71 33.93 0.16 0.20 15 16 O -0.16 -2.57 18.79 -30.46 -0.57 -3.14 15 17 O -0.15 -2.47 18.79 -30.46 -0.57 -3.05 15 18 C -0.05 -0.74 9.08 -39.48 -0.36 -1.10 15 19 C -0.01 -0.18 6.86 -80.01 -0.55 -0.72 15 20 N 0.01 0.09 4.71 33.93 0.16 0.25 15 21 O -0.15 -2.54 18.79 -30.46 -0.57 -3.11 15 22 O -0.16 -2.60 18.79 -30.47 -0.57 -3.17 15 23 C 0.02 0.29 9.11 -39.16 -0.36 -0.07 15 24 H 0.30 5.61 8.26 -40.82 -0.34 5.27 15 25 H 0.39 7.60 6.01 -40.82 -0.25 7.36 15 26 H 0.17 2.40 5.93 -52.48 -0.31 2.09 15 27 H 0.17 2.23 7.10 -52.49 -0.37 1.85 15 28 H 0.18 2.85 7.18 -52.49 -0.38 2.47 15 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -24.27 281.49 -5.92 -30.19 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -0.82 Total: 9.90 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.10 Total: -2.63 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 1.00 Total: -25.41 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -2.20 Total: -27.01 kcal Atomic # 14 Polarization: 15.76 SS G_CDS: -5.04 Total: 10.72 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -24.27 -5.92 -30.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002070821.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.444 kcal (2) G-P(sol) polarization free energy of solvation -24.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds