Wall clock time and date at job start Tue Mar 31 2020 02:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86809 * 120.00174 * 2 1 4 4 H 1.48496 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46790 * 300.00021 * 3 2 1 6 6 H 1.48498 * 109.46897 * 59.99495 * 3 2 1 7 7 C 1.38951 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00137 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99948 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00440 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00212 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.47410 * 180.02562 * 12 10 9 14 14 C 1.34228 * 117.00006 * 180.02562 * 13 12 10 15 15 O 1.20823 * 119.99648 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99655 * 179.97438 * 14 13 12 17 17 N 1.46499 * 115.55419 * 325.57623 * 16 14 13 18 18 C 1.34598 * 126.43223 * 19.44160 * 17 16 14 19 19 N 1.31076 * 106.67444 * 179.97438 * 18 17 16 20 20 N 1.28844 * 107.99078 * 359.97438 * 19 18 17 21 21 N 1.28735 * 109.39970 * 0.02562 * 20 19 18 22 22 C 1.53002 * 117.49630 * 111.25471 * 16 14 13 23 23 C 1.53008 * 117.49331 * 179.91116 * 16 14 13 24 24 H 0.96995 * 120.00376 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99885 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47159 * 59.99390 * 12 10 9 27 27 H 1.09006 * 109.46610 * 300.00049 * 12 10 9 28 28 H 1.07994 * 126.66235 * 359.97438 * 18 17 16 29 29 H 1.08999 * 117.49436 * 214.99690 * 22 16 14 30 30 H 1.08996 * 117.49943 * 0.02562 * 22 16 14 31 31 H 1.08996 * 117.50234 * 359.97148 * 23 16 14 32 32 H 1.09005 * 117.49461 * 145.00167 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 8 2.1873 -5.9666 -0.0004 14 6 1.6743 -7.2070 -0.0013 15 8 0.4765 -7.3652 -0.0022 16 6 2.5924 -8.4020 -0.0012 17 7 3.8424 -8.2386 -0.7474 18 6 4.4130 -7.0734 -1.1059 19 7 5.5115 -7.3761 -1.7537 20 7 5.6107 -8.6602 -1.7906 21 7 4.6037 -9.1845 -1.1837 22 6 2.6317 -9.2625 1.2633 23 6 1.9464 -9.7890 -0.0002 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6174 -4.9205 -0.8913 27 1 0.6168 -4.9209 0.8887 28 1 4.0383 -6.0817 -0.8998 29 1 3.5877 -9.7070 1.5400 30 1 1.9932 -8.9645 2.0949 31 1 0.8575 -9.8371 0.0009 32 1 2.4516 -10.5799 -0.5547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118479217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:10 Heat of formation + Delta-G solvation = 40.021199 kcal Electronic energy + Delta-G solvation = -21484.551309 eV Core-core repulsion = 17871.131678 eV Total energy + Delta-G solvation = -3613.419631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.096 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.25732 -41.14796 -38.73310 -37.86403 -36.60534 -34.16993 -33.81451 -32.38937 -31.53869 -29.03038 -26.36292 -24.79108 -24.05529 -23.36193 -23.00298 -20.93353 -19.83309 -19.18629 -18.26100 -17.27250 -17.03284 -16.73807 -16.46031 -15.83643 -15.79592 -14.90624 -14.52979 -14.32478 -14.08852 -13.38155 -13.17814 -12.79913 -12.51701 -12.48935 -12.30914 -12.19024 -11.79556 -11.72272 -11.25764 -11.23436 -11.03013 -10.85500 -10.66034 -10.47812 -10.39896 -10.23720 -9.74403 -8.73217 -8.22314 -6.62212 -4.04706 1.03374 1.25338 1.72018 1.96638 2.24713 2.91200 3.03655 3.18368 3.25179 3.48030 3.55748 3.78498 3.95903 4.11115 4.41130 4.56597 4.73608 4.90665 4.93534 5.00864 5.14102 5.24472 5.37650 5.41833 5.42256 5.57337 5.78892 6.02875 6.10698 7.17530 7.37265 7.79979 8.32047 8.54153 8.94214 9.23763 9.71517 10.54565 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.003977 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.507956 B = 7038.161343 C = 7891.945180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.109 0.891 9 N -0.546 5.546 10 C 0.433 3.567 11 O -0.576 6.576 12 C 0.059 3.941 13 O -0.325 6.325 14 C 0.502 3.498 15 O -0.476 6.476 16 C 0.070 3.930 17 N -0.284 5.284 18 C 0.190 3.810 19 N -0.305 5.305 20 N -0.073 5.073 21 N -0.102 5.102 22 C -0.129 4.129 23 C -0.115 4.115 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.252 0.748 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 -15.683 2.548 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.433 4.433 8 H 0.127 0.873 9 N -0.182 5.182 10 C 0.217 3.783 11 O -0.461 6.461 12 C -0.017 4.017 13 O -0.239 6.239 14 C 0.342 3.658 15 O -0.361 6.361 16 C -0.018 4.018 17 N -0.086 5.086 18 C -0.107 4.107 19 N -0.152 5.152 20 N -0.067 5.067 21 N -0.088 5.088 22 C -0.167 4.167 23 C -0.153 4.153 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.268 0.732 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.107 -16.373 1.970 16.492 hybrid contribution -1.169 1.629 0.411 2.046 sum -1.276 -14.745 2.381 14.990 Atomic orbital electron populations 1.69605 1.06073 1.28639 1.49108 1.25334 0.95686 1.00003 0.96532 0.85732 0.79806 0.80559 0.77904 1.18949 1.20516 1.20540 1.19805 0.93598 0.81549 1.48367 0.87333 1.41693 1.09427 1.04073 1.63036 1.19165 0.88347 0.83869 0.86905 1.90580 1.13162 1.86597 1.55770 1.22999 0.90631 0.83870 1.04233 1.86430 1.41016 1.14016 1.82447 1.21465 0.86908 0.83649 0.73822 1.90752 1.14619 1.86165 1.44571 1.20630 0.83845 0.93338 1.04016 1.47708 1.17761 1.05749 1.37336 1.28611 0.90996 0.95301 0.95819 1.75133 1.15824 1.06200 1.18075 1.78613 1.13222 1.01048 1.13855 1.78783 1.00625 1.16383 1.12966 1.23772 1.04912 0.97032 0.90969 1.23747 1.02870 0.89684 0.98984 0.91512 0.77112 0.88864 0.88790 0.73202 0.85627 0.85357 0.84759 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.81 13.05 55.50 0.72 -22.08 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -7.89 9.68 -14.93 -0.14 -8.04 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -12.63 5.29 -10.96 -0.06 -12.69 16 10 C 0.43 9.23 7.86 -10.99 -0.09 9.14 16 11 O -0.58 -14.27 16.08 -14.11 -0.23 -14.50 16 12 C 0.06 0.94 5.94 36.01 0.21 1.15 16 13 O -0.32 -4.85 6.85 -45.90 -0.31 -5.17 16 14 C 0.50 6.36 7.45 36.00 0.27 6.63 16 15 O -0.48 -6.41 16.01 -18.75 -0.30 -6.71 16 16 C 0.07 0.73 3.20 -132.97 -0.43 0.31 16 17 N -0.28 -3.76 3.67 -50.89 -0.19 -3.95 16 18 C 0.19 2.90 11.89 -90.39 -1.07 1.83 16 19 N -0.30 -5.21 12.36 29.59 0.37 -4.84 16 20 N -0.07 -1.20 13.43 60.35 0.81 -0.39 16 21 N -0.10 -1.44 12.75 60.35 0.77 -0.67 16 22 C -0.13 -0.90 10.16 -26.69 -0.27 -1.17 16 23 C -0.12 -0.82 9.68 -26.69 -0.26 -1.08 16 24 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 25 H 0.40 8.65 7.90 -40.82 -0.32 8.32 16 26 H 0.09 1.32 8.13 -51.93 -0.42 0.89 16 27 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 28 H 0.25 3.92 5.92 -52.49 -0.31 3.61 16 29 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.13 0.83 7.67 -51.93 -0.40 0.43 16 32 H 0.13 0.86 7.90 -51.93 -0.41 0.45 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -30.96 299.13 -3.45 -34.41 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.64 Total: 7.91 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -1.88 Total: 9.36 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 2.43 Total: -44.63 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.84 Total: -26.38 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.96 -3.45 -34.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118479217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.429 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds