Wall clock time and date at job start Tue Mar 31 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86802 * 120.00127 * 2 1 4 4 H 1.48498 * 109.46796 * 274.98320 * 3 2 1 5 5 H 1.48505 * 109.46859 * 34.97645 * 3 2 1 6 6 H 1.48491 * 109.47494 * 154.97910 * 3 2 1 7 7 C 1.40141 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99922 * 186.25497 * 7 2 1 9 9 C 1.41815 * 120.00192 * 6.26165 * 7 2 1 10 10 O 1.21743 * 119.99521 * 353.76422 * 9 7 2 11 11 N 1.34776 * 120.00034 * 173.76155 * 9 7 2 12 12 C 1.38677 * 119.99804 * 180.02562 * 11 9 7 13 13 N 1.34062 * 126.30022 * 359.97438 * 12 11 9 14 14 C 1.30202 * 109.86053 * 179.97438 * 13 12 11 15 15 N 1.35264 * 109.45043 * 0.05202 * 14 13 12 16 16 C 1.37677 * 107.55135 * 359.93674 * 15 14 13 17 17 C 1.41690 * 127.13150 * 180.02562 * 16 15 14 18 18 O 1.21687 * 119.99551 * 180.02562 * 17 16 15 19 19 O 1.34956 * 120.00050 * 0.02562 * 17 16 15 20 20 C 1.46524 * 123.74002 * 179.97438 * 15 14 13 21 21 C 1.53461 * 108.13480 * 343.76370 * 20 15 14 22 22 O 1.43034 * 109.56957 * 48.15494 * 21 20 15 23 23 C 1.43408 * 114.06126 * 289.94548 * 22 21 20 24 24 H 0.96991 * 120.00094 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00015 * 0.02562 * 11 9 7 26 26 H 0.96694 * 114.00159 * 179.97438 * 19 17 16 27 27 H 1.08999 * 109.73149 * 224.10340 * 20 15 14 28 28 H 1.09004 * 109.76510 * 103.44338 * 20 15 14 29 29 H 1.09004 * 109.45283 * 168.17719 * 21 20 15 30 30 H 1.08998 * 109.45268 * 288.13044 * 21 20 15 31 31 H 1.08999 * 109.79809 * 290.18607 * 23 22 21 32 32 H 1.09003 * 109.84128 * 169.36999 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3825 2.1071 -1.3948 5 1 1.4943 2.6200 0.8026 6 1 3.5865 1.4122 0.5921 7 6 2.0070 -1.2136 0.0005 8 1 3.0822 -1.2164 0.1025 9 6 1.3043 -2.4382 -0.1329 10 8 0.0869 -2.4444 -0.1337 11 7 1.9843 -3.5951 -0.2588 12 6 1.2971 -4.7925 -0.3898 13 7 -0.0347 -4.9455 -0.4066 14 6 -0.3334 -6.2053 -0.5449 15 7 0.8047 -6.9321 -0.6235 16 6 1.8634 -6.0572 -0.5282 17 6 3.2433 -6.3773 -0.5630 18 8 4.0752 -5.4945 -0.4663 19 8 3.6348 -7.6611 -0.7035 20 6 0.8309 -8.3884 -0.7826 21 6 -0.5608 -8.9322 -0.4327 22 8 -1.5593 -8.1664 -1.1126 23 6 -1.7090 -6.8291 -0.6166 24 1 -0.4850 0.8400 -0.0004 25 1 2.9542 -3.5901 -0.2578 26 1 4.5943 -7.7805 -0.7168 27 1 1.5736 -8.8186 -0.1108 28 1 1.0766 -8.6423 -1.8138 29 1 -0.6310 -9.9754 -0.7411 30 1 -0.7186 -8.8605 0.6434 31 1 -2.1560 -6.8519 0.3773 32 1 -2.3409 -6.2525 -1.2921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:28 Heat of formation + Delta-G solvation = -127.784035 kcal Electronic energy + Delta-G solvation = -22118.040858 eV Core-core repulsion = 18465.051895 eV Total energy + Delta-G solvation = -3652.988963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.56391 -40.95458 -39.94591 -38.96003 -37.15129 -35.65274 -34.82638 -34.39484 -31.46697 -30.87984 -28.88297 -27.46199 -24.98713 -24.69530 -22.63818 -21.53374 -20.75956 -19.34438 -18.95094 -18.66100 -17.98365 -17.67303 -17.42641 -17.01463 -16.51895 -16.23485 -16.01079 -15.75136 -15.30330 -15.00104 -14.69766 -14.60394 -14.33967 -13.79859 -13.24019 -13.04856 -12.79472 -12.70082 -12.63325 -12.22375 -12.00791 -11.96526 -11.47253 -11.31032 -11.01632 -10.92447 -10.44823 -9.82598 -8.80556 -8.40602 -7.04075 -0.13297 1.36890 1.39362 1.40971 1.57782 1.61710 1.99021 2.17676 2.22774 2.50468 2.52737 2.66591 3.21856 3.42678 3.62087 3.63823 4.03305 4.15197 4.26639 4.47533 4.56449 4.65625 4.69586 4.76589 5.04098 5.20508 5.41823 5.64069 5.81490 5.96198 6.01207 6.23137 6.70389 6.74488 6.89701 7.38764 8.36870 8.54912 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.005187 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.451483 B = 5396.901491 C = 6530.986897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.033 3.967 3 Si 1.006 2.994 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.518 3.482 10 O -0.574 6.574 11 N -0.650 5.650 12 C 0.353 3.647 13 N -0.521 5.521 14 C 0.227 3.773 15 N -0.433 5.433 16 C -0.173 4.173 17 C 0.572 3.428 18 O -0.552 6.552 19 O -0.492 6.492 20 C 0.071 3.929 21 C 0.044 3.956 22 O -0.375 6.375 23 C 0.154 3.846 24 H 0.281 0.719 25 H 0.415 0.585 26 H 0.431 0.569 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.162 0.838 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -19.560 -0.850 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.186 4.186 3 Si 0.824 3.176 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.601 4.601 8 H 0.105 0.895 9 C 0.326 3.674 10 O -0.456 6.456 11 N -0.298 5.298 12 C 0.119 3.881 13 N -0.248 5.248 14 C -0.038 4.038 15 N -0.122 5.122 16 C -0.286 4.286 17 C 0.421 3.579 18 O -0.445 6.445 19 O -0.305 6.305 20 C -0.049 4.049 21 C -0.032 4.032 22 O -0.292 6.292 23 C 0.075 3.925 24 H 0.092 0.908 25 H 0.254 0.746 26 H 0.291 0.709 27 H 0.142 0.858 28 H 0.121 0.879 29 H 0.179 0.821 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.985 -18.785 -0.909 18.832 hybrid contribution 2.176 0.428 0.093 2.219 sum 3.161 -18.356 -0.816 18.645 Atomic orbital electron populations 1.70161 1.09687 1.29709 1.33086 1.27048 0.95562 1.05042 0.90908 0.84888 0.78848 0.74364 0.79471 1.18487 1.18982 1.17211 1.20551 0.95905 0.90625 1.53005 0.89493 1.17670 0.87743 0.83165 0.78784 1.90683 1.14566 1.85698 1.54674 1.43742 1.10350 1.03381 1.72370 1.18728 0.88775 0.86123 0.94432 1.70125 1.12779 1.16897 1.24993 1.25146 0.93078 0.86477 0.99067 1.45174 1.03920 1.08987 1.54115 1.18125 0.87676 0.89446 1.33331 1.17435 0.86187 0.81501 0.72756 1.90908 1.53527 1.49495 1.50536 1.84931 1.34092 1.26056 1.85453 1.23158 1.02218 0.73821 1.05741 1.23391 0.83442 0.97913 0.98496 1.88154 1.57714 1.22702 1.60600 1.21552 0.85456 0.81672 1.03799 0.90824 0.74607 0.70854 0.85807 0.87869 0.82090 0.90421 0.86906 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -49.19 11.76 21.85 0.26 -48.94 16 2 C 0.03 1.85 5.49 85.33 0.47 2.32 16 3 Si 1.01 41.44 29.56 68.60 2.03 43.47 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.57 -33.78 9.31 23.62 0.22 -33.56 16 8 H 0.09 4.72 7.86 -2.91 -0.02 4.70 16 9 C 0.52 32.74 7.53 85.13 0.64 33.38 16 10 O -0.57 -40.35 13.60 -4.49 -0.06 -40.41 16 11 N -0.65 -35.29 5.36 -315.55 -1.69 -36.98 16 12 C 0.35 17.58 7.66 132.70 1.02 18.60 16 13 N -0.52 -25.88 9.39 -182.93 -1.72 -27.60 16 14 C 0.23 8.21 7.76 138.31 1.07 9.29 16 15 N -0.43 -13.54 3.17 -503.43 -1.60 -15.14 16 16 C -0.17 -6.69 6.85 39.32 0.27 -6.42 16 17 C 0.57 18.85 8.08 68.67 0.56 19.40 16 18 O -0.55 -21.24 15.80 19.22 0.30 -20.93 16 19 O -0.49 -9.95 11.73 -58.73 -0.69 -10.64 16 20 C 0.07 1.26 6.37 86.53 0.55 1.82 16 21 C 0.04 0.57 6.83 72.14 0.49 1.06 16 22 O -0.37 -7.46 10.78 -148.98 -1.61 -9.06 16 23 C 0.15 3.80 7.29 71.40 0.52 4.32 16 24 H 0.28 15.46 8.29 -92.72 -0.77 14.69 16 25 H 0.42 20.82 6.82 -92.71 -0.63 20.19 16 26 H 0.43 4.53 8.98 -74.06 -0.67 3.87 16 27 H 0.12 1.74 7.34 -2.39 -0.02 1.72 16 28 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.16 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 31 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -91.01 285.60 0.95 -90.06 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.08 Total: 25.96 kcal Atomic # 6 Polarization: 44.40 SS G_CDS: 5.81 Total: 50.21 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -4.75 Total: -128.65 kcal Atomic # 8 Polarization: -78.99 SS G_CDS: -2.05 Total: -81.05 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -91.01 0.95 -90.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.724 kcal (2) G-P(sol) polarization free energy of solvation -91.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds