Wall clock time and date at job start Tue Mar 31 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37966 * 120.07956 * 2 1 4 4 C 1.38346 * 120.14892 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29717 * 0.02562 * 4 3 2 6 6 C 1.37929 * 120.14979 * 0.02562 * 5 4 3 7 7 C 1.39584 * 120.07112 * 179.73007 * 2 1 3 8 8 C 1.47796 * 120.14929 * 0.02562 * 7 2 1 9 9 O 1.21565 * 119.99888 * 7.45312 * 8 7 2 10 10 N 1.34781 * 120.00018 * 187.45222 * 8 7 2 11 11 C 1.39124 * 119.99487 * 185.49937 * 10 8 7 12 12 C 1.39512 * 119.82967 * 214.46023 * 11 10 8 13 13 C 1.36361 * 120.16514 * 179.71530 * 12 11 10 14 14 C 1.40890 * 119.82956 * 0.56019 * 13 12 11 15 15 C 1.41130 * 120.16332 * 179.69682 * 14 13 12 16 16 H 1.08004 * 120.00471 * 160.97272 * 15 14 13 17 17 C 1.39911 * 119.99973 * 340.97237 * 15 14 13 18 18 N 1.30875 * 119.99906 * 327.72926 * 17 15 14 19 19 Si 1.86799 * 120.00236 * 147.72871 * 17 15 14 20 20 H 1.48502 * 109.47170 * 94.99083 * 19 17 15 21 21 H 1.48497 * 109.47355 * 214.99050 * 19 17 15 22 22 H 1.48502 * 109.47140 * 334.99010 * 19 17 15 23 23 C 1.40884 * 119.67370 * 359.71357 * 14 13 12 24 24 C 1.36360 * 119.82992 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47277 * 98.07646 * 1 2 3 26 26 H 1.09007 * 109.46844 * 338.07948 * 1 2 3 27 27 H 1.08993 * 109.47340 * 218.08192 * 1 2 3 28 28 H 1.08006 * 119.92586 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.84845 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.92625 * 179.97438 * 5 4 3 31 31 H 1.07995 * 120.07364 * 179.97438 * 6 5 4 32 32 H 0.96994 * 119.99788 * 5.49494 * 10 8 7 33 33 H 1.08002 * 119.92200 * 359.97438 * 12 11 10 34 34 H 1.07999 * 120.09008 * 180.27717 * 13 12 11 35 35 H 0.97002 * 119.99466 * 180.02562 * 18 17 15 36 36 H 1.07996 * 120.07852 * 179.97438 * 23 14 13 37 37 H 1.07997 * 119.91234 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1955 0.0005 5 6 4.2815 0.0016 0.0005 6 6 3.6026 -1.1991 -0.0005 7 6 2.2064 -1.2080 0.0057 8 6 1.4723 -2.4907 0.0112 9 8 0.2645 -2.5004 -0.1258 10 7 2.1421 -3.6498 0.1680 11 6 1.4688 -4.8624 0.0590 12 6 1.8509 -5.9423 0.8554 13 6 1.1920 -7.1322 0.7584 14 6 0.1306 -7.2729 -0.1575 15 6 -0.5520 -8.5031 -0.2683 16 1 -1.5322 -8.5381 -0.7206 17 6 0.0410 -9.6775 0.2078 18 7 1.3414 -9.8184 0.1637 19 14 -1.0234 -11.0445 0.9063 20 1 -1.3102 -12.0409 -0.1568 21 1 -0.3066 -11.7072 2.0254 22 1 -2.2994 -10.4722 1.4057 23 6 -0.2456 -6.1795 -0.9624 24 6 0.4192 -4.9942 -0.8503 25 1 -0.3633 -0.1444 -1.0174 26 1 -0.3633 0.9534 0.3837 27 1 -0.3633 -0.8088 0.6338 28 1 1.6585 2.1293 0.0004 29 1 4.1183 2.1329 0.0001 30 1 5.3615 0.0099 0.0005 31 1 4.1498 -2.1302 -0.0009 32 1 3.0934 -3.6384 0.3568 33 1 2.6678 -5.8344 1.5536 34 1 1.4858 -7.9660 1.3787 35 1 1.7524 -10.6328 0.4935 36 1 -1.0579 -6.2803 -1.6669 37 1 0.1321 -4.1554 -1.4670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000269643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:17 Heat of formation + Delta-G solvation = 8.187131 kcal Electronic energy + Delta-G solvation = -20442.140110 eV Core-core repulsion = 17341.729657 eV Total energy + Delta-G solvation = -3100.410453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27097 -38.54126 -37.06921 -34.63216 -33.25121 -32.46322 -31.25994 -29.55936 -28.90104 -27.02066 -25.10528 -23.51992 -21.90496 -21.41853 -20.56649 -19.69005 -17.67634 -17.32523 -16.35017 -15.77557 -15.29666 -15.13630 -14.85511 -14.59298 -14.00459 -13.64237 -13.40455 -13.15719 -12.88462 -12.66366 -12.17251 -12.05203 -12.01052 -11.86255 -11.70034 -11.44184 -11.15789 -11.13218 -10.93899 -10.54955 -10.10599 -9.72453 -9.41808 -9.06787 -8.99848 -8.78697 -8.63534 -7.55659 -7.14034 -6.90250 -4.27135 0.87552 1.27347 2.62295 2.98408 3.04054 3.10138 3.12173 3.34128 3.74449 3.87377 3.94555 4.50218 4.71272 4.79362 4.82245 5.03925 5.24250 5.40752 5.60473 5.68140 5.79435 5.85424 5.94133 6.18544 6.21664 6.30222 6.33245 6.40289 6.59732 6.78399 6.84503 6.95421 6.98548 7.14799 7.28628 7.55865 7.69589 7.89707 8.01123 8.23922 8.30412 8.53892 8.76849 8.82832 8.99704 9.99077 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042420 B = 0.003362 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.901495 B = 8327.086787 C = 8787.261369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.134 4.134 4 C -0.099 4.099 5 C -0.137 4.137 6 C -0.086 4.086 7 C -0.129 4.129 8 C 0.537 3.463 9 O -0.525 6.525 10 N -0.642 5.642 11 C -0.022 4.022 12 C -0.102 4.102 13 C -0.172 4.172 14 C 0.111 3.889 15 C -0.461 4.461 16 H 0.082 0.918 17 C 0.087 3.913 18 N -0.768 5.768 19 Si 0.897 3.103 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.065 4.065 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.393 0.607 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.283 0.717 36 H 0.094 0.906 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 14.534 1.260 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.152 4.152 4 C -0.117 4.117 5 C -0.155 4.155 6 C -0.105 4.105 7 C -0.132 4.132 8 C 0.325 3.675 9 O -0.403 6.403 10 N -0.284 5.284 11 C -0.114 4.114 12 C -0.123 4.123 13 C -0.192 4.192 14 C 0.108 3.892 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.135 4.135 18 N -0.390 5.390 19 Si 0.721 3.279 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.085 4.085 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.227 0.773 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.268 14.355 1.178 15.337 hybrid contribution 0.361 -0.676 0.398 0.864 sum 5.630 13.679 1.576 14.876 Atomic orbital electron populations 1.21054 0.89977 1.02581 1.03920 1.20094 0.97005 0.91473 0.94125 1.21047 0.94249 0.97424 1.02442 1.21287 0.94268 0.98135 0.98004 1.21046 1.00005 0.92239 1.02192 1.21357 0.93114 0.98613 0.97384 1.20001 0.93598 0.93721 1.05886 1.18214 0.87237 0.83411 0.78592 1.90719 1.13509 1.86668 1.49434 1.42881 1.11312 1.04695 1.69534 1.17032 1.03309 0.85027 1.06000 1.20158 1.00194 0.93720 0.98182 1.20672 1.00333 0.96026 1.02137 1.17600 0.90381 0.92328 0.88907 1.19539 1.03462 0.91215 1.34665 0.89991 1.25973 0.94807 0.99863 0.92860 1.69950 1.11631 1.26883 1.30578 0.86482 0.81733 0.80174 0.79543 1.19428 1.19864 1.18055 1.20554 1.04923 0.94420 1.04523 1.20212 0.95480 0.96659 0.96142 0.90613 0.92797 0.88556 0.85621 0.85878 0.85667 0.85585 0.77313 0.89299 0.87117 0.90566 0.88740 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.66 36.00 0.31 -1.31 16 2 C -0.03 -0.35 5.91 -104.22 -0.62 -0.97 16 3 C -0.13 -1.45 9.66 -39.64 -0.38 -1.83 16 4 C -0.10 -0.94 10.04 -39.49 -0.40 -1.34 16 5 C -0.14 -1.36 10.03 -39.64 -0.40 -1.76 16 6 C -0.09 -1.03 9.50 -39.18 -0.37 -1.40 16 7 C -0.13 -1.91 5.87 -104.97 -0.62 -2.53 16 8 C 0.54 9.91 7.40 -12.35 -0.09 9.82 16 9 O -0.52 -11.23 11.16 5.31 0.06 -11.17 16 10 N -0.64 -11.85 5.23 -10.61 -0.06 -11.91 16 11 C -0.02 -0.49 6.26 -83.60 -0.52 -1.01 16 12 C -0.10 -2.37 9.90 -39.78 -0.39 -2.76 16 13 C -0.17 -4.41 8.75 -39.26 -0.34 -4.76 16 14 C 0.11 2.97 5.60 -106.80 -0.60 2.37 16 15 C -0.46 -12.17 8.95 -37.86 -0.34 -12.51 16 16 H 0.08 2.09 8.01 -52.48 -0.42 1.67 16 17 C 0.09 2.13 4.81 -17.33 -0.08 2.05 16 18 N -0.77 -19.23 11.56 55.55 0.64 -18.59 16 19 Si 0.90 18.13 29.66 -169.99 -5.04 13.08 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.22 -5.74 9.74 -39.26 -0.38 -6.12 16 24 C -0.07 -1.58 8.57 -39.79 -0.34 -1.93 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.58 8.03 -51.93 -0.42 0.17 16 27 H 0.10 1.56 5.99 -51.93 -0.31 1.25 16 28 H 0.13 1.06 8.05 -52.48 -0.42 0.64 16 29 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.29 6.54 -52.49 -0.34 0.94 16 32 H 0.39 5.86 6.97 -40.82 -0.28 5.57 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 2.88 6.31 -52.49 -0.33 2.55 16 35 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 36 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.10 2.39 6.50 -52.49 -0.34 2.05 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -29.56 313.66 -9.35 -38.91 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.12 Total: 10.93 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -5.57 Total: -25.99 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.59 Total: -30.49 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.06 Total: -11.17 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.04 Total: 13.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.56 -9.35 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000269643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.099 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds