Wall clock time and date at job start Tue Mar 31 2020 02:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37966 * 120.07956 * 2 1 4 4 C 1.38346 * 120.14892 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29717 * 0.02562 * 4 3 2 6 6 C 1.37929 * 120.14979 * 0.02562 * 5 4 3 7 7 C 1.39584 * 120.07112 * 179.73007 * 2 1 3 8 8 C 1.47796 * 120.14929 * 0.02562 * 7 2 1 9 9 O 1.21565 * 119.99888 * 7.45312 * 8 7 2 10 10 N 1.34781 * 120.00018 * 187.45222 * 8 7 2 11 11 C 1.39124 * 119.99487 * 185.49937 * 10 8 7 12 12 C 1.39512 * 119.82967 * 214.46023 * 11 10 8 13 13 C 1.36361 * 120.16514 * 179.71530 * 12 11 10 14 14 C 1.40890 * 119.82956 * 0.56019 * 13 12 11 15 15 C 1.41130 * 120.16332 * 179.69682 * 14 13 12 16 16 H 1.08004 * 120.00471 * 160.97272 * 15 14 13 17 17 C 1.39911 * 119.99973 * 340.97237 * 15 14 13 18 18 N 1.30875 * 119.99906 * 327.72926 * 17 15 14 19 19 Si 1.86799 * 120.00236 * 147.72871 * 17 15 14 20 20 H 1.48502 * 109.47170 * 94.99083 * 19 17 15 21 21 H 1.48497 * 109.47355 * 214.99050 * 19 17 15 22 22 H 1.48502 * 109.47140 * 334.99010 * 19 17 15 23 23 C 1.40884 * 119.67370 * 359.71357 * 14 13 12 24 24 C 1.36360 * 119.82992 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47277 * 98.07646 * 1 2 3 26 26 H 1.09007 * 109.46844 * 338.07948 * 1 2 3 27 27 H 1.08993 * 109.47340 * 218.08192 * 1 2 3 28 28 H 1.08006 * 119.92586 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.84845 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.92625 * 179.97438 * 5 4 3 31 31 H 1.07995 * 120.07364 * 179.97438 * 6 5 4 32 32 H 0.96994 * 119.99788 * 5.49494 * 10 8 7 33 33 H 1.08002 * 119.92200 * 359.97438 * 12 11 10 34 34 H 1.07999 * 120.09008 * 180.27717 * 13 12 11 35 35 H 0.97002 * 119.99466 * 180.02562 * 18 17 15 36 36 H 1.07996 * 120.07852 * 179.97438 * 23 14 13 37 37 H 1.07997 * 119.91234 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1955 0.0005 5 6 4.2815 0.0016 0.0005 6 6 3.6026 -1.1991 -0.0005 7 6 2.2064 -1.2080 0.0057 8 6 1.4723 -2.4907 0.0112 9 8 0.2645 -2.5004 -0.1258 10 7 2.1421 -3.6498 0.1680 11 6 1.4688 -4.8624 0.0590 12 6 1.8509 -5.9423 0.8554 13 6 1.1920 -7.1322 0.7584 14 6 0.1306 -7.2729 -0.1575 15 6 -0.5520 -8.5031 -0.2683 16 1 -1.5322 -8.5381 -0.7206 17 6 0.0410 -9.6775 0.2078 18 7 1.3414 -9.8184 0.1637 19 14 -1.0234 -11.0445 0.9063 20 1 -1.3102 -12.0409 -0.1568 21 1 -0.3066 -11.7072 2.0254 22 1 -2.2994 -10.4722 1.4057 23 6 -0.2456 -6.1795 -0.9624 24 6 0.4192 -4.9942 -0.8503 25 1 -0.3633 -0.1444 -1.0174 26 1 -0.3633 0.9534 0.3837 27 1 -0.3633 -0.8088 0.6338 28 1 1.6585 2.1293 0.0004 29 1 4.1183 2.1329 0.0001 30 1 5.3615 0.0099 0.0005 31 1 4.1498 -2.1302 -0.0009 32 1 3.0934 -3.6384 0.3568 33 1 2.6678 -5.8344 1.5536 34 1 1.4858 -7.9660 1.3787 35 1 1.7524 -10.6328 0.4935 36 1 -1.0579 -6.2803 -1.6669 37 1 0.1321 -4.1554 -1.4670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000269643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:16 Heat of formation + Delta-G solvation = -7.359633 kcal Electronic energy + Delta-G solvation = -20442.814268 eV Core-core repulsion = 17341.729657 eV Total energy + Delta-G solvation = -3101.084611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59029 -39.86791 -38.71563 -36.32283 -34.96259 -33.48148 -32.38727 -31.46545 -30.65140 -28.08912 -26.81085 -24.72265 -23.43085 -22.90610 -22.03176 -21.18718 -19.35053 -18.85979 -17.94631 -17.04636 -16.71527 -16.32662 -16.12647 -15.83446 -15.77442 -15.06708 -14.78601 -14.41849 -14.25539 -14.03008 -13.98382 -13.79187 -13.33544 -13.08575 -12.94950 -12.84495 -12.71827 -12.56222 -12.32254 -11.98808 -11.87074 -11.58550 -11.17788 -10.69377 -10.38847 -9.94639 -9.67267 -9.50652 -9.00616 -8.74701 -6.23762 -0.12406 0.41713 0.86184 1.11810 1.37317 1.44530 1.55778 1.97759 2.18854 2.33023 2.61924 2.90377 3.68191 3.76035 3.88812 3.92715 4.18105 4.35900 4.42577 4.44820 4.52672 4.74666 4.80578 4.83998 4.88656 5.01386 5.07918 5.11908 5.25933 5.30718 5.38820 5.43951 5.51226 5.59511 5.63943 5.85968 5.99932 6.01229 6.07944 6.32536 6.59260 6.71929 6.87058 6.96682 7.37192 8.17826 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042420 B = 0.003362 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.901495 B = 8327.086787 C = 8787.261369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.133 4.133 4 C -0.085 4.085 5 C -0.132 4.132 6 C -0.089 4.089 7 C -0.158 4.158 8 C 0.535 3.465 9 O -0.562 6.562 10 N -0.639 5.639 11 C -0.010 4.010 12 C -0.101 4.101 13 C -0.190 4.190 14 C 0.082 3.918 15 C -0.501 4.501 16 H 0.075 0.925 17 C 0.051 3.949 18 N -0.795 5.795 19 Si 0.974 3.026 20 H -0.258 1.258 21 H -0.260 1.260 22 H -0.262 1.262 23 C -0.245 4.245 24 C -0.076 4.076 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.152 0.848 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.140 0.860 32 H 0.411 0.589 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.295 0.705 36 H 0.092 0.908 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.134 16.359 2.132 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.047 4.047 3 C -0.151 4.151 4 C -0.103 4.103 5 C -0.150 4.150 6 C -0.107 4.107 7 C -0.161 4.161 8 C 0.326 3.674 9 O -0.443 6.443 10 N -0.283 5.283 11 C -0.103 4.103 12 C -0.121 4.121 13 C -0.210 4.210 14 C 0.080 3.920 15 C -0.528 4.528 16 H 0.094 0.906 17 C -0.169 4.169 18 N -0.418 5.418 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.184 1.184 22 H -0.186 1.186 23 C -0.265 4.265 24 C -0.096 4.096 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.169 0.831 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.157 0.843 32 H 0.249 0.751 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.528 16.204 2.045 17.984 hybrid contribution -0.214 -1.009 0.096 1.036 sum 7.314 15.195 2.140 16.999 Atomic orbital electron populations 1.20932 0.90874 1.02721 1.02546 1.20238 0.96771 0.92365 0.95318 1.21352 0.95193 0.97125 1.01450 1.21793 0.93789 0.99659 0.95090 1.21476 1.01728 0.91390 1.00419 1.21573 0.91820 1.00451 0.96890 1.19803 0.94831 0.91868 1.09624 1.18923 0.87062 0.84520 0.76908 1.90707 1.15428 1.87380 1.50813 1.42786 1.12186 1.03420 1.69918 1.17103 1.02317 0.86531 1.04327 1.20426 1.00549 0.92839 0.98322 1.20703 1.00960 0.96899 1.02424 1.17910 0.91390 0.92983 0.89767 1.19741 1.03668 0.92346 1.37028 0.90649 1.26768 0.96059 1.01777 0.92297 1.69940 1.13042 1.28214 1.30611 0.85336 0.79357 0.76855 0.79093 1.18294 1.18387 1.18612 1.20677 1.05655 0.95089 1.05092 1.20305 0.96297 0.96103 0.96875 0.91900 0.90011 0.91901 0.83073 0.82084 0.82327 0.84270 0.75088 0.86019 0.87860 0.89365 0.88930 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 8.66 71.24 0.62 -2.54 16 2 C -0.05 -1.20 5.91 -19.60 -0.12 -1.31 16 3 C -0.13 -2.43 9.66 22.23 0.21 -2.21 16 4 C -0.09 -1.21 10.04 22.33 0.22 -0.99 16 5 C -0.13 -2.04 10.03 22.23 0.22 -1.82 16 6 C -0.09 -1.89 9.50 22.53 0.21 -1.67 16 7 C -0.16 -4.56 5.87 -20.09 -0.12 -4.67 16 8 C 0.54 20.06 7.40 86.77 0.64 20.70 16 9 O -0.56 -25.20 11.16 -3.92 -0.04 -25.24 16 10 N -0.64 -23.46 5.23 -305.74 -1.60 -25.06 16 11 C -0.01 -0.44 6.26 38.60 0.24 -0.20 16 12 C -0.10 -4.71 9.90 22.14 0.22 -4.49 16 13 C -0.19 -10.04 8.75 22.48 0.20 -9.84 16 14 C 0.08 4.61 5.60 -21.27 -0.12 4.50 16 15 C -0.50 -27.58 8.95 23.39 0.21 -27.37 16 16 H 0.08 4.08 8.01 -2.91 -0.02 4.05 16 17 C 0.05 2.54 4.81 85.24 0.41 2.95 16 18 N -0.79 -40.35 11.56 21.82 0.25 -40.10 16 19 Si 0.97 37.48 29.66 68.60 2.03 39.51 16 20 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 21 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 23 C -0.25 -13.27 9.74 22.48 0.22 -13.05 16 24 C -0.08 -3.85 8.57 22.14 0.19 -3.66 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 26 H 0.08 1.69 8.03 -2.38 -0.02 1.67 16 27 H 0.06 2.16 5.99 -2.39 -0.01 2.14 16 28 H 0.15 1.93 8.05 -2.91 -0.02 1.90 16 29 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 30 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 31 H 0.14 2.46 6.54 -2.91 -0.02 2.44 16 32 H 0.41 11.74 6.97 -92.71 -0.65 11.10 16 33 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 34 H 0.10 5.52 6.31 -2.91 -0.02 5.50 16 35 H 0.30 13.24 8.30 -92.71 -0.77 12.47 16 36 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.10 4.93 6.50 -2.91 -0.02 4.91 16 Total: -1.00 -68.01 313.66 4.57 -63.44 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.46 Total: 33.14 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 3.47 Total: -45.68 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -1.35 Total: -65.16 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.04 Total: -25.24 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -68.01 4.57 -63.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000269643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.080 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds