Wall clock time and date at job start Tue Mar 31 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46895 * 109.46766 * 2 1 4 4 C 1.36094 * 110.99785 * 185.28106 * 3 2 1 5 5 C 1.40605 * 120.54503 * 87.76829 * 4 3 2 6 6 C 1.46557 * 121.06324 * 359.97438 * 5 4 3 7 7 O 1.21994 * 120.00103 * 354.23683 * 6 5 4 8 8 C 1.41796 * 119.99741 * 174.23397 * 6 5 4 9 9 H 1.08004 * 120.00278 * 333.77256 * 8 6 5 10 10 C 1.40233 * 120.00241 * 153.77590 * 8 6 5 11 11 N 1.30571 * 120.00414 * 173.27315 * 10 8 6 12 12 Si 1.86806 * 119.99723 * 353.27223 * 10 8 6 13 13 H 1.48502 * 109.46817 * 85.97863 * 12 10 8 14 14 H 1.48495 * 109.47106 * 205.98318 * 12 10 8 15 15 H 1.48499 * 109.46930 * 325.98254 * 12 10 8 16 16 C 1.46815 * 117.86403 * 179.76845 * 5 4 3 17 17 O 1.21728 * 120.68493 * 180.24061 * 16 5 4 18 18 N 1.34890 * 118.62304 * 0.44756 * 16 5 4 19 19 C 1.46507 * 119.56781 * 179.79450 * 18 16 5 20 20 C 1.34290 * 120.86269 * 359.51568 * 18 16 5 21 21 O 1.21555 * 118.78889 * 180.25727 * 20 18 16 22 22 N 1.34215 * 122.42136 * 0.27824 * 20 18 16 23 23 C 1.46496 * 119.34547 * 179.97438 * 22 20 18 24 24 H 1.08992 * 109.47036 * 60.00217 * 1 2 3 25 25 H 1.09002 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47303 * 299.99868 * 1 2 3 27 27 H 1.08995 * 109.46473 * 240.00219 * 2 1 3 28 28 H 1.08992 * 109.47036 * 119.99783 * 2 1 3 29 29 H 1.00902 * 111.00179 * 61.32559 * 3 2 1 30 30 H 0.96996 * 119.99967 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46727 * 269.72407 * 19 18 16 32 32 H 1.08997 * 109.46825 * 149.72892 * 19 18 16 33 33 H 1.08998 * 109.47224 * 29.72940 * 19 18 16 34 34 H 1.08999 * 109.47169 * 355.14230 * 23 22 20 35 35 H 1.09000 * 109.47438 * 115.14109 * 23 22 20 36 36 H 1.08999 * 109.47178 * 235.14177 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3750 1.4231 -0.1169 5 6 3.9829 1.4331 -1.3848 6 6 3.1783 1.4024 -2.6094 7 8 1.9685 1.2615 -2.5410 8 6 3.8062 1.5365 -3.8737 9 1 4.7450 2.0638 -3.9572 10 6 3.2082 0.9844 -5.0157 11 7 3.7150 1.2185 -6.1960 12 14 1.6865 -0.0861 -4.8481 13 1 0.4760 0.7739 -4.8295 14 1 1.6109 -1.0224 -5.9982 15 1 1.7630 -0.8606 -3.5834 16 6 5.4491 1.4800 -1.4424 17 8 6.0286 1.4951 -2.5128 18 7 6.1410 1.5019 -0.2846 19 6 7.6050 1.5442 -0.3180 20 6 5.5051 1.4910 0.8981 21 8 6.1657 1.5163 1.9182 22 7 4.1670 1.4528 0.9954 23 6 3.5436 1.4427 2.3211 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7140 1.8766 0.8265 30 1 3.3011 0.8369 -6.9859 31 1 7.9979 0.5274 -0.3197 32 1 7.9733 2.0745 0.5602 33 1 7.9331 2.0620 -1.2192 34 1 4.3176 1.3826 3.0862 35 1 2.9671 2.3575 2.4586 36 1 2.8821 0.5804 2.4049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000340940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:06 Heat of formation + Delta-G solvation = -54.627873 kcal Electronic energy + Delta-G solvation = -23338.500958 eV Core-core repulsion = 19824.517379 eV Total energy + Delta-G solvation = -3513.983579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.95125 -38.80555 -38.52095 -36.50231 -34.96746 -34.80105 -32.80975 -31.26383 -29.95849 -27.83604 -26.58319 -26.42967 -23.47115 -22.82545 -21.87036 -20.11795 -19.24557 -17.39003 -16.98931 -16.87389 -16.28356 -15.80611 -15.29685 -15.07180 -14.94463 -14.71401 -13.98106 -13.75026 -13.37234 -13.28536 -12.88627 -12.66181 -12.40614 -12.29426 -12.10984 -12.09090 -11.88766 -11.68605 -11.19656 -10.91068 -10.86480 -10.71261 -10.36780 -9.82586 -9.44583 -9.14111 -8.97809 -8.90054 -7.64214 -7.50420 -6.62652 -4.73102 1.22113 2.13164 2.28449 3.25363 3.37788 3.45498 3.62107 3.69711 3.90381 4.34138 4.41583 4.65790 4.95195 5.03219 5.11946 5.19300 5.40907 5.45946 5.53139 5.55505 5.62287 5.62735 5.74394 5.83818 5.87232 6.02729 6.21299 6.32996 6.46385 6.67384 7.04484 7.23084 7.50913 7.64240 7.86965 8.31013 8.44845 8.75706 8.93702 10.03515 10.35544 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.008621 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.897799 B = 3247.197043 C = 4750.336123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 N -0.587 5.587 4 C 0.356 3.644 5 C -0.246 4.246 6 C 0.411 3.589 7 O -0.561 6.561 8 C -0.486 4.486 9 H 0.109 0.891 10 C 0.094 3.906 11 N -0.806 5.806 12 Si 0.962 3.038 13 H -0.273 1.273 14 H -0.320 1.320 15 H -0.265 1.265 16 C 0.546 3.454 17 O -0.466 6.466 18 N -0.560 5.560 19 C 0.083 3.917 20 C 0.701 3.299 21 O -0.565 6.565 22 N -0.557 5.557 23 C 0.064 3.936 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.029 0.971 29 H 0.348 0.652 30 H 0.283 0.717 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -1.797 15.177 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 N -0.216 5.216 4 C 0.155 3.845 5 C -0.259 4.259 6 C 0.312 3.688 7 O -0.457 6.457 8 C -0.517 4.517 9 H 0.126 0.874 10 C -0.126 4.126 11 N -0.436 5.436 12 Si 0.793 3.207 13 H -0.199 1.199 14 H -0.251 1.251 15 H -0.190 1.190 16 C 0.340 3.660 17 O -0.336 6.336 18 N -0.306 5.306 19 C -0.059 4.059 20 C 0.404 3.596 21 O -0.441 6.441 22 N -0.283 5.283 23 C -0.078 4.078 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.171 0.829 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.249 -1.744 14.393 14.552 hybrid contribution -0.146 -0.527 0.921 1.071 sum -1.395 -2.271 15.314 15.545 Atomic orbital electron populations 1.21715 0.93867 1.01786 1.02880 1.22036 0.96636 0.85387 1.01397 1.56708 1.03931 1.16922 1.44074 1.19858 0.86306 0.92802 0.85536 1.23254 0.91238 1.17146 0.94220 1.17242 0.86955 0.78826 0.85790 1.90234 1.15080 1.53592 1.86843 1.21054 1.08987 1.31202 0.90449 0.87368 1.26125 0.97400 0.95019 0.94048 1.69573 1.38165 1.36516 0.99299 0.85301 0.81014 0.78695 0.75672 1.19888 1.25143 1.18998 1.18623 0.88084 0.76622 0.82689 1.90896 1.70684 1.45349 1.26696 1.46464 1.10090 1.67697 1.06325 1.21811 0.76088 1.03447 1.04541 1.15514 0.81479 0.78385 0.84267 1.90911 1.63506 1.56262 1.33445 1.45525 1.05546 1.68623 1.08620 1.22017 1.00071 1.02649 0.83071 0.90333 0.92081 0.93272 0.88713 0.95320 0.82895 0.90707 0.91327 0.89592 0.88933 0.87367 0.90558 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 10.22 37.16 0.38 -1.43 16 2 C 0.07 1.02 5.47 -3.82 -0.02 1.00 16 3 N -0.59 -9.26 4.64 -59.46 -0.28 -9.53 16 4 C 0.36 6.28 6.02 -153.50 -0.92 5.35 16 5 C -0.25 -5.48 6.10 -102.19 -0.62 -6.10 16 6 C 0.41 10.81 6.28 -34.87 -0.22 10.60 16 7 O -0.56 -14.80 10.40 4.92 0.05 -14.75 16 8 C -0.49 -14.12 8.69 -37.47 -0.33 -14.44 16 9 H 0.11 3.36 5.99 -52.48 -0.31 3.04 16 10 C 0.09 2.68 5.52 -17.34 -0.10 2.58 16 11 N -0.81 -23.12 13.91 55.56 0.77 -22.34 16 12 Si 0.96 24.34 25.90 -169.99 -4.40 19.94 16 13 H -0.27 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.32 -7.77 7.11 56.52 0.40 -7.36 16 15 H -0.26 -6.72 6.84 56.52 0.39 -6.34 16 16 C 0.55 11.86 7.59 -12.74 -0.10 11.76 16 17 O -0.47 -11.53 13.41 5.16 0.07 -11.46 16 18 N -0.56 -10.09 2.95 -129.82 -0.38 -10.47 16 19 C 0.08 1.20 10.10 59.85 0.60 1.80 16 20 C 0.70 11.88 8.09 -87.86 -0.71 11.17 16 21 O -0.57 -9.80 14.87 5.32 0.08 -9.72 16 22 N -0.56 -8.37 2.99 -127.84 -0.38 -8.75 16 23 C 0.06 0.64 9.35 59.84 0.56 1.20 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 1.75 7.29 -51.93 -0.38 1.37 16 28 H 0.03 0.34 7.10 -51.93 -0.37 -0.03 16 29 H 0.35 4.15 7.15 -39.29 -0.28 3.87 16 30 H 0.28 7.37 8.29 -40.82 -0.34 7.03 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.12 7.33 -51.93 -0.38 0.73 16 33 H 0.09 1.34 7.41 -51.93 -0.38 0.95 16 34 H 0.11 1.10 6.78 -51.93 -0.35 0.75 16 35 H 0.08 0.60 7.71 -51.93 -0.40 0.20 16 36 H 0.07 0.61 6.97 -51.93 -0.36 0.25 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -34.19 298.14 -5.51 -39.70 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.06 Total: -0.59 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: -1.47 Total: 23.49 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.27 Total: -51.10 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: 0.20 Total: -35.93 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.40 Total: 19.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.19 -5.51 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000340940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds