Wall clock time and date at job start Tue Mar 31 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99521 * 2 1 4 4 C 1.50701 * 109.46653 * 269.99730 * 3 2 1 5 5 H 1.07996 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99675 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00240 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99928 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46916 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46908 * 120.00015 * 8 6 4 11 11 H 1.48504 * 109.46971 * 240.00112 * 8 6 4 12 12 C 1.34777 * 119.99970 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99600 * 179.97438 * 12 2 1 14 14 C 1.50701 * 120.00287 * 359.97438 * 12 2 1 15 15 N 1.46498 * 109.46840 * 179.97438 * 14 12 2 16 16 C 1.36831 * 119.68793 * 90.00402 * 15 14 12 17 17 C 1.35028 * 119.68141 * 180.02562 * 16 15 14 18 18 C 1.41570 * 119.11275 * 0.28010 * 17 16 15 19 19 O 1.21784 * 120.30658 * 179.72201 * 18 17 16 20 20 N 1.34839 * 119.38870 * 359.40796 * 18 17 16 21 21 C 1.46494 * 119.87137 * 180.30098 * 20 18 17 22 22 C 1.34544 * 119.68795 * 270.01980 * 15 14 12 23 23 O 1.21586 * 119.53485 * 359.97438 * 22 15 14 24 24 H 1.09002 * 109.46951 * 269.99629 * 1 2 3 25 25 H 1.08999 * 109.47676 * 30.00159 * 1 2 3 26 26 H 1.09002 * 109.46992 * 150.00169 * 1 2 3 27 27 H 1.08994 * 109.47471 * 29.99731 * 3 2 1 28 28 H 1.08999 * 109.47069 * 150.00467 * 3 2 1 29 29 H 0.96994 * 120.00211 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46739 * 59.99772 * 14 12 2 31 31 H 1.09002 * 109.46873 * 300.00207 * 14 12 2 32 32 H 1.07994 * 120.16126 * 359.97438 * 16 15 14 33 33 H 1.08002 * 120.43848 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47005 * 270.31830 * 21 20 18 35 35 H 1.09005 * 109.47424 * 30.31596 * 21 20 18 36 36 H 1.09000 * 109.47321 * 150.31830 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6733 8 14 3.4375 3.4170 -3.4341 9 1 2.8596 2.4169 -4.3674 10 1 2.8003 4.7380 -3.6667 11 1 4.9000 3.5246 -3.6681 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0001 14 6 1.3855 -2.4723 0.0017 15 7 2.3376 -3.5858 0.0014 16 6 2.7789 -4.1003 1.1900 17 6 3.6568 -5.1262 1.1897 18 6 4.1085 -5.6458 -0.0474 19 8 4.9041 -6.5675 -0.0731 20 7 3.6448 -5.1150 -1.1969 21 6 4.1000 -5.6489 -2.4829 22 6 2.7700 -4.0925 -1.1675 23 8 2.3648 -3.6202 -2.2120 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 4.0322 4.4427 -0.8506 30 1 0.7584 -2.5306 -0.8881 31 1 0.7592 -2.5295 0.8920 32 1 2.4273 -3.6874 2.1240 33 1 4.0135 -5.5415 2.1207 34 1 4.9939 -5.1134 -2.8026 35 1 4.3305 -6.7089 -2.3752 36 1 3.3144 -5.5218 -3.2277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078772440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:43 Heat of formation + Delta-G solvation = -81.576079 kcal Electronic energy + Delta-G solvation = -22336.079850 eV Core-core repulsion = 18820.927709 eV Total energy + Delta-G solvation = -3515.152141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.43574 -40.87532 -39.89348 -38.25601 -36.64319 -36.32827 -34.78009 -33.06767 -30.48823 -29.26751 -28.37230 -27.20225 -25.16810 -24.82593 -24.16079 -20.60181 -20.29024 -18.88364 -18.71846 -18.46135 -18.14427 -17.59470 -17.17439 -16.65110 -16.44754 -16.16874 -15.81663 -15.35141 -14.82018 -14.64395 -14.56744 -14.33635 -14.14331 -13.75429 -13.47275 -13.34361 -13.15340 -13.11886 -12.92140 -12.77988 -12.55207 -12.25226 -12.08328 -11.70534 -11.44087 -10.97481 -10.80299 -10.67255 -9.60020 -9.45275 -8.26132 -6.39630 0.04364 0.70384 0.91812 1.32279 1.35325 1.46381 1.68957 1.90977 2.25374 2.35719 2.53802 3.04060 3.48697 3.56890 3.70038 3.96752 4.15004 4.17897 4.29256 4.34175 4.45755 4.57927 4.60339 4.68638 4.79449 4.98633 5.04760 5.14193 5.22210 5.37748 5.52616 5.79743 6.03730 6.09765 6.35941 6.64411 6.72808 6.78485 7.24025 7.38902 8.80639 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.004688 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.666240 B = 5971.663057 C = 6492.422761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.260 3.740 4 C -0.543 4.543 5 H 0.047 0.953 6 C 0.011 3.989 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.265 1.265 11 H -0.284 1.284 12 C 0.478 3.522 13 O -0.593 6.593 14 C 0.102 3.898 15 N -0.517 5.517 16 C 0.203 3.797 17 C -0.313 4.313 18 C 0.538 3.462 19 O -0.559 6.559 20 N -0.561 5.561 21 C 0.076 3.924 22 C 0.689 3.311 23 O -0.569 6.569 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.000 1.000 29 H 0.267 0.733 30 H 0.136 0.864 31 H 0.192 0.808 32 H 0.232 0.768 33 H 0.198 0.802 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.152 -16.062 5.748 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.065 0.935 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.190 1.190 11 H -0.210 1.210 12 C 0.265 3.735 13 O -0.474 6.474 14 C -0.022 4.022 15 N -0.234 5.234 16 C 0.080 3.920 17 C -0.339 4.339 18 C 0.337 3.663 19 O -0.439 6.439 20 N -0.305 5.305 21 C -0.065 4.065 22 C 0.392 3.608 23 O -0.444 6.444 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.050 0.950 28 H 0.018 0.982 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.209 0.791 32 H 0.248 0.752 33 H 0.215 0.785 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.316 -16.064 5.080 19.252 hybrid contribution 0.849 0.826 -1.154 1.654 sum -8.467 -15.238 3.927 17.869 Atomic orbital electron populations 1.22108 0.77091 1.04313 1.03659 1.48137 1.08789 1.05961 1.70489 1.18763 0.91372 0.80444 0.95567 1.21737 1.36719 1.06376 0.93361 0.93497 1.25753 0.94998 0.96543 1.01503 1.70022 1.38923 1.14873 1.32656 0.85485 0.77837 0.78508 0.79701 1.19716 1.18965 1.20960 1.21504 0.88143 0.86928 0.76883 1.90705 1.16531 1.87879 1.52279 1.22117 0.89686 0.79747 1.10684 1.44507 1.42382 1.31648 1.04893 1.23127 0.89367 0.89306 0.90196 1.22075 1.08230 1.05400 0.98217 1.18026 0.80879 0.82596 0.84760 1.90828 1.35195 1.30146 1.87705 1.46500 1.40631 1.31655 1.11679 1.21983 1.01383 1.00995 0.82123 1.16087 0.79839 0.80189 0.84659 1.90996 1.60304 1.61660 1.31470 0.89260 0.91820 0.88523 0.95039 0.98185 0.92367 0.84629 0.79111 0.75203 0.78547 0.91334 0.87844 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 10.24 127.77 1.31 2.94 16 2 N -0.60 -22.59 2.86 -851.12 -2.43 -25.02 16 3 C 0.26 13.31 5.16 85.63 0.44 13.75 16 4 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 5 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 6 C 0.01 0.65 5.46 84.66 0.46 1.11 16 7 N -0.92 -55.25 13.29 21.45 0.28 -54.96 16 8 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 9 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 C 0.48 17.34 7.74 87.66 0.68 18.02 16 13 O -0.59 -28.76 16.01 -3.04 -0.05 -28.81 16 14 C 0.10 2.12 4.37 85.63 0.37 2.49 16 15 N -0.52 -12.31 2.10 -660.90 -1.39 -13.70 16 16 C 0.20 3.30 10.38 83.17 0.86 4.16 16 17 C -0.31 -6.19 10.00 22.35 0.22 -5.96 16 18 C 0.54 15.33 7.44 85.05 0.63 15.97 16 19 O -0.56 -18.82 16.70 -4.62 -0.08 -18.90 16 20 N -0.56 -16.53 2.96 -806.45 -2.39 -18.92 16 21 C 0.08 1.94 10.12 127.77 1.29 3.23 16 22 C 0.69 21.50 8.11 179.18 1.45 22.95 16 23 O -0.57 -21.29 15.35 -3.99 -0.06 -21.35 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 26 H 0.10 1.51 6.44 -2.39 -0.02 1.50 16 27 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 28 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 29 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.14 2.72 6.63 -2.38 -0.02 2.71 16 31 H 0.19 1.33 8.00 -2.39 -0.02 1.31 16 32 H 0.23 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 2.33 7.43 -2.38 -0.02 2.31 16 36 H 0.10 2.30 7.39 -2.39 -0.02 2.28 16 Total: -1.00 -89.90 316.52 4.99 -84.91 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.10 Total: 1.44 kcal Atomic # 6 Polarization: 39.85 SS G_CDS: 7.97 Total: 47.83 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -5.92 Total: -112.60 kcal Atomic # 8 Polarization: -68.87 SS G_CDS: -0.19 Total: -69.06 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -89.90 4.99 -84.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078772440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.334 kcal (2) G-P(sol) polarization free energy of solvation -89.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds