Wall clock time and date at job start Tue Mar 31 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00267 * 2 1 4 4 O 1.20820 * 120.00216 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00018 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47348 * 180.02562 * 5 3 2 7 7 C 1.36840 * 119.99708 * 280.65692 * 6 5 3 8 8 H 1.08002 * 120.00311 * 141.10846 * 7 6 5 9 9 C 1.39054 * 120.00115 * 321.11144 * 7 6 5 10 10 N 1.31368 * 119.99920 * 256.49791 * 9 7 6 11 11 Si 1.86805 * 120.00098 * 76.49277 * 9 7 6 12 12 H 1.48506 * 109.46777 * 54.37364 * 11 9 7 13 13 H 1.48501 * 109.47146 * 174.37301 * 11 9 7 14 14 H 1.48491 * 109.47300 * 294.37635 * 11 9 7 15 15 C 1.34776 * 120.00325 * 100.65490 * 6 5 3 16 16 O 1.21675 * 119.99850 * 343.87671 * 15 6 5 17 17 C 1.47018 * 119.99894 * 163.87869 * 15 6 5 18 18 C 1.38526 * 126.89322 * 240.28731 * 17 15 6 19 19 C 1.39643 * 105.34823 * 180.10341 * 18 17 15 20 20 C 1.50697 * 126.06023 * 179.85050 * 19 18 17 21 21 N 1.30885 * 107.88004 * 359.58742 * 19 18 17 22 22 N 1.28444 * 110.94843 * 0.26119 * 21 19 18 23 23 C 1.46503 * 125.18955 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46886 * 300.00272 * 1 2 3 26 26 H 1.09001 * 109.47199 * 59.99717 * 1 2 3 27 27 H 1.08996 * 109.47742 * 59.99647 * 5 3 2 28 28 H 1.09008 * 109.46966 * 299.99885 * 5 3 2 29 29 H 0.97004 * 119.99760 * 184.99840 * 10 9 7 30 30 H 1.07997 * 127.32427 * 359.95440 * 18 17 15 31 31 H 1.08995 * 109.47452 * 269.71377 * 20 19 18 32 32 H 1.09000 * 109.46920 * 149.71549 * 20 19 18 33 33 H 1.09002 * 109.46904 * 29.71699 * 20 19 18 34 34 H 1.08998 * 109.46626 * 79.64737 * 23 22 21 35 35 H 1.09005 * 109.46697 * 199.63873 * 23 22 21 36 36 H 1.08996 * 109.47360 * 319.64088 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 3.9652 3.3985 -1.1640 8 1 3.6488 4.4311 -1.1566 9 6 4.3556 2.7996 -2.3567 10 7 5.5370 3.0624 -2.8677 11 14 3.2004 1.6213 -3.2322 12 1 1.8929 2.2877 -3.4599 13 1 3.7898 1.2285 -4.5375 14 1 3.0000 0.4112 -2.3954 15 6 4.3804 3.2639 1.1474 16 8 4.1259 2.7416 2.2165 17 6 5.1226 4.5323 1.1070 18 6 6.3991 4.7647 1.5924 19 6 6.6574 6.1104 1.3237 20 6 7.9225 6.8558 1.6627 21 7 5.6082 6.6083 0.7200 22 7 4.6946 5.7168 0.5772 23 6 3.3921 5.9368 -0.0565 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.9558 0.7808 -0.8907 28 1 3.9564 0.7804 0.8892 29 1 5.7813 2.7025 -3.7348 30 1 7.0541 4.0564 2.0777 31 1 7.8290 7.2980 2.6545 32 1 8.0881 7.6436 0.9278 33 1 8.7655 6.1648 1.6509 34 1 3.5062 5.9094 -1.1402 35 1 2.6996 5.1551 0.2557 36 1 3.0017 6.9092 0.2434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120650537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:41 Heat of formation + Delta-G solvation = -17.480686 kcal Electronic energy + Delta-G solvation = -23032.770360 eV Core-core repulsion = 19520.397604 eV Total energy + Delta-G solvation = -3512.372756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.24117 -41.59437 -40.02462 -37.55009 -36.72000 -34.91037 -34.46153 -31.91940 -30.74729 -30.07526 -27.92309 -27.27801 -26.06645 -23.90013 -22.16944 -21.79793 -20.58171 -19.03763 -18.76657 -18.61199 -17.61982 -17.38727 -17.17980 -16.76857 -16.47385 -16.24489 -15.48949 -15.00133 -14.63825 -14.56867 -14.42069 -14.16856 -14.06235 -13.86510 -13.60266 -13.31363 -13.13954 -13.06905 -12.99208 -12.52171 -12.42948 -12.05787 -11.80529 -11.61212 -11.48069 -10.93509 -10.48603 -10.29844 -9.72433 -9.57294 -8.94823 -5.90054 0.72526 1.07826 1.17990 1.35238 1.37100 1.55196 1.81190 1.87351 1.96537 2.06708 2.23250 2.88455 3.66285 3.88380 4.04092 4.16961 4.26443 4.27193 4.28199 4.30091 4.32694 4.45591 4.57201 4.61326 4.68287 4.97187 5.01507 5.12567 5.15678 5.26219 5.29351 5.70850 5.83256 6.07239 6.27591 6.74416 6.86139 7.29339 7.37428 7.74101 7.89333 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.006936 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.997427 B = 4036.136555 C = 4723.616569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.516 6.516 5 C 0.089 3.911 6 N -0.394 5.394 7 C -0.522 4.522 8 H 0.119 0.881 9 C 0.150 3.850 10 N -0.709 5.709 11 Si 0.824 3.176 12 H -0.279 1.279 13 H -0.267 1.267 14 H -0.243 1.243 15 C 0.518 3.482 16 O -0.622 6.622 17 C 0.021 3.979 18 C -0.219 4.219 19 C 0.018 3.982 20 C -0.055 4.055 21 N -0.319 5.319 22 N -0.274 5.274 23 C 0.101 3.899 24 H 0.139 0.861 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.294 0.706 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -1.657 0.636 2.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.403 6.403 5 C -0.035 4.035 6 N -0.110 5.110 7 C -0.639 4.639 8 H 0.136 0.864 9 C -0.082 4.082 10 N -0.329 5.329 11 Si 0.643 3.357 12 H -0.204 1.204 13 H -0.192 1.192 14 H -0.167 1.167 15 C 0.309 3.691 16 O -0.511 6.511 17 C -0.109 4.109 18 C -0.248 4.248 19 C -0.139 4.139 20 C -0.113 4.113 21 N -0.152 5.152 22 N -0.060 5.060 23 C -0.039 4.039 24 H 0.157 0.843 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.179 0.821 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.627 -0.652 0.474 1.816 hybrid contribution -0.934 -1.291 -0.682 1.734 sum -2.561 -1.944 -0.207 3.222 Atomic orbital electron populations 1.23547 0.75180 1.05815 1.02171 1.86515 1.24964 1.32900 1.84222 1.24681 0.92969 0.81581 0.71648 1.90569 1.67122 1.37284 1.45337 1.21620 0.87004 0.88809 1.06049 1.42992 1.51390 1.08604 1.08009 1.19111 1.59101 1.00393 0.85288 0.86391 1.25457 0.91738 0.92993 0.97987 1.70884 1.16014 1.30653 1.15318 0.87917 0.84828 0.82831 0.80133 1.20437 1.19218 1.16689 1.17246 0.83030 0.85365 0.83422 1.90637 1.62295 1.67637 1.30509 1.21533 0.97658 0.88371 1.03300 1.21996 0.95216 0.97838 1.09763 1.22502 0.97025 0.92971 1.01438 1.20133 0.89542 0.99275 1.02354 1.72851 0.99751 1.20542 1.22064 1.45686 1.13872 1.05594 1.40876 1.22200 0.79078 1.03737 0.98855 0.84268 0.92158 0.92603 0.86491 0.86294 0.89316 0.82098 0.89594 0.90745 0.89172 0.88969 0.90203 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.37 -13.30 10.56 -51.36 -0.54 -13.84 16 3 C 0.45 19.39 6.26 71.24 0.45 19.84 16 4 O -0.52 -24.81 15.88 21.98 0.35 -24.46 16 5 C 0.09 3.88 5.30 85.63 0.45 4.33 16 6 N -0.39 -19.25 2.22 -643.77 -1.43 -20.67 16 7 C -0.52 -25.69 7.55 84.11 0.63 -25.05 16 8 H 0.12 5.89 2.68 -2.91 -0.01 5.88 16 9 C 0.15 6.97 4.92 84.96 0.42 7.38 16 10 N -0.71 -33.03 13.95 21.68 0.30 -32.73 16 11 Si 0.82 33.93 26.24 68.60 1.80 35.73 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.24 -9.55 5.56 99.48 0.55 -8.99 16 15 C 0.52 26.45 6.74 86.55 0.58 27.03 16 16 O -0.62 -34.00 16.76 -4.27 -0.07 -34.08 16 17 C 0.02 0.98 5.91 40.77 0.24 1.22 16 18 C -0.22 -9.35 10.98 22.68 0.25 -9.10 16 19 C 0.02 0.71 7.22 43.04 0.31 1.02 16 20 C -0.05 -1.44 10.45 71.23 0.74 -0.69 16 21 N -0.32 -13.48 11.90 -47.50 -0.57 -14.05 16 22 N -0.27 -12.18 3.62 -356.02 -1.29 -13.47 16 23 C 0.10 3.92 9.10 127.77 1.16 5.09 16 24 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 26 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 27 H 0.12 4.79 4.72 -2.39 -0.01 4.78 16 28 H 0.12 4.91 7.38 -2.38 -0.02 4.89 16 29 H 0.29 12.17 8.31 -92.71 -0.77 11.40 16 30 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 3.60 6.57 -2.39 -0.02 3.59 16 35 H 0.08 3.39 6.93 -2.38 -0.02 3.37 16 36 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -66.26 307.52 5.96 -60.30 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.97 Total: 24.30 kcal Atomic # 6 Polarization: 26.52 SS G_CDS: 6.44 Total: 32.96 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.98 Total: -80.92 kcal Atomic # 8 Polarization: -72.11 SS G_CDS: -0.27 Total: -72.38 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 1.80 Total: 35.73 kcal Total: -66.26 5.96 -60.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120650537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.820 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds