Wall clock time and date at job start Tue Mar 31 2020 01:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47369 * 305.34598 * 3 2 1 5 5 C 1.37092 * 120.00197 * 271.97785 * 4 3 2 6 6 H 1.07998 * 120.00255 * 188.11531 * 5 4 3 7 7 C 1.38959 * 119.99941 * 8.10719 * 5 4 3 8 8 N 1.31410 * 119.99609 * 24.10801 * 7 5 4 9 9 Si 1.86793 * 120.00004 * 204.10546 * 7 5 4 10 10 H 1.48501 * 109.47303 * 60.00627 * 9 7 5 11 11 H 1.48497 * 109.47038 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47431 * 299.99985 * 9 7 5 13 13 C 1.34778 * 119.99771 * 91.97880 * 4 3 2 14 14 O 1.21293 * 119.99574 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00545 * 359.97438 * 13 4 3 16 16 H 1.09006 * 109.86644 * 56.00787 * 15 13 4 17 17 C 1.54095 * 109.87683 * 295.00438 * 15 13 4 18 18 C 1.54811 * 104.30572 * 238.32518 * 17 15 13 19 19 C 1.55224 * 101.98634 * 339.26095 * 18 17 15 20 20 H 1.08995 * 110.52325 * 278.38233 * 19 18 17 21 21 C 1.50706 * 110.78041 * 155.49839 * 19 18 17 22 22 O 1.20820 * 120.00112 * 249.29511 * 21 19 18 23 23 O 1.34232 * 119.99732 * 69.29070 * 21 19 18 24 24 C 1.45195 * 116.99762 * 180.02562 * 23 21 19 25 25 O 1.43741 * 110.00548 * 177.09531 * 15 13 4 26 26 H 4.40637 * 5.51445 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.46777 * 185.34324 * 3 2 1 28 28 H 1.09007 * 109.46949 * 65.34812 * 3 2 1 29 29 H 0.96999 * 119.99841 * 179.97438 * 8 7 5 30 30 H 1.08999 * 110.49338 * 357.06855 * 17 15 13 31 31 H 1.09003 * 110.48965 * 119.58295 * 17 15 13 32 32 H 1.08999 * 110.90848 * 97.38333 * 18 17 15 33 33 H 1.08996 * 110.91020 * 220.98918 * 18 17 15 34 34 H 1.08997 * 109.47147 * 180.02562 * 24 23 21 35 35 H 1.09005 * 109.46662 * 300.00007 * 24 23 21 36 36 H 1.08997 * 109.47559 * 60.00008 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7981 1.1266 5 6 3.3243 -0.2120 2.3513 6 1 3.8062 -0.7635 3.1451 7 6 2.8967 1.0917 2.5713 8 7 1.9305 1.5986 1.8389 9 14 3.6953 2.1235 3.9080 10 1 5.1460 2.2651 3.6239 11 1 3.0634 3.4670 3.9401 12 1 3.5109 1.4588 5.2231 13 6 3.3979 -2.1093 0.9589 14 8 3.8021 -2.7707 1.8918 15 6 3.1890 -2.7538 -0.3871 16 1 3.7632 -2.2218 -1.1457 17 6 1.6920 -2.7318 -0.7519 18 6 1.3261 -4.2221 -0.9564 19 6 2.7155 -4.8617 -1.2208 20 1 3.0087 -4.7221 -2.2613 21 6 2.7061 -6.3263 -0.8658 22 8 3.3323 -6.7205 0.0893 23 8 2.0020 -7.1929 -1.6108 24 6 2.0382 -8.5880 -1.2099 25 8 3.5975 -4.1312 -0.3416 26 1 -1.0499 0.0000 0.0003 27 1 3.0088 1.0240 0.0957 28 1 3.0095 -0.4279 -0.9341 29 1 1.6318 2.5086 1.9927 30 1 1.1071 -2.3037 0.0622 31 1 1.5317 -2.1698 -1.6720 32 1 0.8715 -4.6380 -0.0573 33 1 0.6683 -4.3466 -1.8166 34 1 1.4296 -9.1787 -1.8945 35 1 3.0671 -8.9471 -1.2368 36 1 1.6457 -8.6855 -0.1978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292285922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:03 Heat of formation + Delta-G solvation = -76.833523 kcal Electronic energy + Delta-G solvation = -22518.110182 eV Core-core repulsion = 18970.870943 eV Total energy + Delta-G solvation = -3547.239239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68787 -39.54044 -37.76742 -36.32989 -35.19357 -32.50619 -31.74224 -31.31736 -30.16139 -27.77310 -26.50368 -25.19340 -23.67046 -21.73908 -20.85793 -19.41271 -17.98510 -17.73152 -16.95646 -16.76524 -16.48885 -16.29077 -15.57999 -15.09741 -14.70631 -14.21048 -13.89499 -13.76419 -13.58857 -13.13894 -12.87319 -12.52084 -12.44315 -12.23239 -11.69827 -11.65590 -11.55311 -11.16604 -10.98658 -10.87553 -10.81252 -10.53152 -10.34513 -10.28520 -9.78924 -9.30852 -9.26993 -8.85742 -8.29030 -7.97350 -6.36848 -3.84145 2.19151 2.37044 3.16090 3.24489 3.28267 3.60966 3.74922 3.99118 4.08100 4.22699 4.52066 4.64564 4.90271 4.96145 4.98219 5.01049 5.05311 5.10553 5.23281 5.38295 5.39908 5.53166 5.70788 5.75774 5.86376 6.04464 6.21638 6.26807 6.37176 6.74163 6.86882 7.00491 7.54132 7.77963 7.97790 8.40082 8.79310 9.10529 9.31101 9.86183 10.61581 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.004654 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.499937 B = 6015.195822 C = 6626.864234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.101 4.101 3 C 0.228 3.772 4 N -0.438 5.438 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.033 3.967 8 N -0.861 5.861 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.447 3.553 14 O -0.560 6.560 15 C 0.067 3.933 16 H 0.086 0.914 17 C -0.146 4.146 18 C -0.136 4.136 19 C 0.083 3.917 20 H 0.109 0.891 21 C 0.464 3.536 22 O -0.477 6.477 23 O -0.359 6.359 24 C 0.036 3.964 25 O -0.319 6.319 26 H 0.198 0.802 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.269 0.731 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -8.434 -12.092 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.103 4.103 3 C 0.105 3.895 4 N -0.159 5.159 5 C -0.441 4.441 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.499 5.499 9 Si 0.748 3.252 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.234 3.766 14 O -0.441 6.441 15 C 0.006 3.994 16 H 0.104 0.896 17 C -0.184 4.184 18 C -0.174 4.174 19 C 0.023 3.977 20 H 0.126 0.874 21 C 0.304 3.696 22 O -0.361 6.361 23 O -0.277 6.277 24 C -0.058 4.058 25 O -0.237 6.237 26 H 0.215 0.785 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.278 -8.817 -11.168 14.602 hybrid contribution -0.167 0.637 0.643 0.921 sum -3.444 -8.180 -10.525 13.768 Atomic orbital electron populations 1.24204 0.95290 1.04888 1.04096 1.22957 0.94106 0.96367 0.96827 1.18433 0.84638 0.98831 0.87638 1.43699 1.56438 1.05831 1.09885 1.19670 1.37473 0.96310 0.90679 0.87495 1.25220 0.95154 0.97807 0.98942 1.70092 1.22491 1.16381 1.40966 0.86066 0.79632 0.78513 0.80978 1.19846 1.21050 1.19865 1.19676 0.85599 0.82236 0.89101 1.90580 1.49571 1.61653 1.42339 1.22687 0.95419 0.83237 0.98042 0.89604 1.23170 0.95276 0.95913 1.04069 1.23112 0.95061 0.95575 1.03601 1.22548 0.92786 0.86100 0.96232 0.87387 1.23306 0.76463 0.88935 0.80854 1.90728 1.39537 1.79087 1.26788 1.86459 1.66414 1.19674 1.55123 1.23264 1.03000 0.77759 1.01735 1.89107 1.51601 1.17898 1.65096 0.78535 0.86975 0.92131 0.92008 0.88245 0.89539 0.90007 0.88699 0.88017 0.91874 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.10 18.71 29.55 0.55 -4.55 16 2 C -0.10 -2.09 8.41 -37.12 -0.31 -2.40 16 3 C 0.23 4.77 4.78 -6.83 -0.03 4.74 16 4 N -0.44 -10.87 2.59 -117.93 -0.31 -11.18 16 5 C -0.31 -8.60 9.43 -14.93 -0.14 -8.74 16 6 H 0.11 3.13 7.30 -52.49 -0.38 2.75 16 7 C 0.03 0.83 4.93 -17.46 -0.09 0.75 16 8 N -0.86 -21.71 8.99 55.50 0.50 -21.21 16 9 Si 0.92 20.31 29.62 -169.99 -5.03 15.28 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.45 11.12 6.82 -10.99 -0.07 11.05 16 14 O -0.56 -16.58 16.12 -13.95 -0.23 -16.80 16 15 C 0.07 1.28 2.97 -27.31 -0.08 1.20 16 16 H 0.09 1.39 7.20 -51.93 -0.37 1.01 16 17 C -0.15 -2.31 4.50 -25.21 -0.11 -2.42 16 18 C -0.14 -1.84 6.60 -24.60 -0.16 -2.01 16 19 C 0.08 1.23 3.87 -26.70 -0.10 1.13 16 20 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 21 C 0.46 7.32 7.34 36.01 0.26 7.58 16 22 O -0.48 -9.51 16.32 -25.23 -0.41 -9.92 16 23 O -0.36 -4.44 10.57 -39.26 -0.41 -4.86 16 24 C 0.04 0.34 10.56 101.05 1.07 1.40 16 25 O -0.32 -6.48 10.03 -64.28 -0.64 -7.12 16 26 H 0.20 3.09 7.80 -54.10 -0.42 2.67 16 27 H 0.11 2.49 6.39 -51.93 -0.33 2.16 16 28 H 0.06 1.03 6.07 -51.93 -0.32 0.71 16 29 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.10 1.87 5.45 -51.93 -0.28 1.58 16 31 H 0.09 1.11 8.02 -51.93 -0.42 0.69 16 32 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -34.80 309.75 -5.28 -40.08 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.19 Total: 3.33 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 0.78 Total: 7.74 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.19 Total: -32.39 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.70 Total: -38.71 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.80 -5.28 -40.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292285922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.750 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds