Wall clock time and date at job start Tue Mar 31 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 116.99958 * 2 1 4 4 O 1.20829 * 120.00284 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99785 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47167 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99843 * 264.09122 * 6 5 3 8 8 H 1.08007 * 119.99496 * 196.60486 * 7 6 5 9 9 C 1.38947 * 120.00309 * 16.59708 * 7 6 5 10 10 N 1.31408 * 119.99694 * 20.79544 * 9 7 6 11 11 Si 1.86796 * 120.00021 * 200.79548 * 9 7 6 12 12 H 1.48497 * 109.47485 * 59.99999 * 11 9 7 13 13 H 1.48510 * 109.46844 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47268 * 299.99841 * 11 9 7 15 15 C 1.34776 * 120.00043 * 84.07956 * 6 5 3 16 16 O 1.21291 * 119.99923 * 0.02562 * 15 6 5 17 17 C 1.50701 * 119.99986 * 179.97438 * 15 6 5 18 18 N 1.46504 * 109.47260 * 180.02562 * 17 15 6 19 19 C 1.34951 * 126.03323 * 125.30977 * 18 17 15 20 20 C 1.35317 * 107.73921 * 180.14728 * 19 18 17 21 21 C 1.50705 * 126.03472 * 179.87061 * 20 19 18 22 22 C 1.39872 * 107.92219 * 359.61630 * 20 19 18 23 23 N 1.30833 * 108.20424 * 0.23860 * 22 20 19 24 24 H 1.09005 * 109.46964 * 299.99769 * 1 2 3 25 25 H 1.09001 * 109.46722 * 59.99800 * 1 2 3 26 26 H 1.08995 * 109.46980 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47359 * 60.00013 * 5 3 2 28 28 H 1.08997 * 109.47022 * 299.99953 * 5 3 2 29 29 H 0.97004 * 120.00392 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.46700 * 60.00912 * 17 15 6 31 31 H 1.08995 * 109.47444 * 300.00753 * 17 15 6 32 32 H 1.07998 * 126.13029 * 0.02562 * 19 18 17 33 33 H 1.08996 * 109.47601 * 269.71632 * 21 20 19 34 34 H 1.09008 * 109.46468 * 149.71741 * 21 20 19 35 35 H 1.08998 * 109.47252 * 29.72759 * 21 20 19 36 36 H 1.08001 * 125.89555 * 180.21710 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2929 3.3031 -1.1806 8 1 4.8465 4.2305 -1.1720 9 6 3.8962 2.7419 -2.3882 10 7 2.9077 1.8765 -2.4172 11 14 4.7679 3.2176 -3.9703 12 1 6.2071 2.8667 -3.8673 13 1 4.1596 2.4852 -5.1101 14 1 4.6295 4.6794 -4.1915 15 6 4.0579 3.3593 1.1615 16 8 3.7830 2.8076 2.2061 17 6 4.4858 4.8043 1.1623 18 7 4.4888 5.3120 2.5366 19 6 5.5293 5.8997 3.1635 20 6 5.1285 6.2203 4.4156 21 6 5.9688 6.8928 5.4705 22 6 3.7949 5.8226 4.5557 23 7 3.4103 5.2780 3.4300 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9558 0.7809 -0.8908 28 1 3.9564 0.7805 0.8891 29 1 2.6309 1.4843 -3.2601 30 1 3.7908 5.3893 0.5600 31 1 5.4884 4.8866 0.7428 32 1 6.5072 6.0800 2.7422 33 1 6.4814 6.1358 6.0639 34 1 5.3279 7.4904 6.1190 35 1 6.7045 7.5389 4.9917 36 1 3.1876 5.9438 5.4405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348805116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:59 Heat of formation + Delta-G solvation = -22.756982 kcal Electronic energy + Delta-G solvation = -22403.059882 eV Core-core repulsion = 18890.458329 eV Total energy + Delta-G solvation = -3512.601553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75382 -39.45877 -38.25399 -35.48562 -34.66860 -33.10337 -31.71598 -31.20102 -29.11990 -27.64421 -26.26709 -25.28618 -24.38225 -21.19109 -20.16176 -19.91325 -19.23682 -17.36030 -16.63373 -16.58861 -15.90959 -15.52054 -15.21864 -14.79402 -14.38488 -14.33032 -13.87451 -13.54125 -13.09601 -12.89964 -12.73268 -12.49769 -12.45330 -12.27579 -11.69282 -11.67681 -11.43299 -11.39018 -11.22518 -10.86578 -10.66697 -10.56278 -9.99694 -9.82631 -9.65118 -9.18751 -9.07273 -8.57702 -8.07768 -7.86851 -6.62060 -4.13380 2.37753 2.95819 3.01476 3.11149 3.12484 3.24634 3.39781 3.66739 3.91000 3.99610 4.48341 4.83741 5.08623 5.18198 5.47720 5.57388 5.69908 5.72041 5.77999 5.80771 5.87275 5.88432 5.94972 6.13475 6.18211 6.28881 6.36601 6.46752 6.56524 7.09756 7.15816 7.38612 7.46550 7.51290 8.07963 8.23887 8.84518 9.07530 9.21502 9.62333 10.44758 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.005806 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.547589 B = 4821.633131 C = 6183.393830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.497 6.497 5 C 0.160 3.840 6 N -0.427 5.427 7 C -0.347 4.347 8 H 0.103 0.897 9 C 0.042 3.958 10 N -0.863 5.863 11 Si 0.927 3.073 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.458 3.542 16 O -0.573 6.573 17 C 0.132 3.868 18 N -0.346 5.346 19 C 0.047 3.953 20 C -0.253 4.253 21 C -0.065 4.065 22 C 0.027 3.973 23 N -0.255 5.255 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.275 0.725 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.168 0.832 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 2.950 4.348 7.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.325 3.675 4 O -0.382 6.382 5 C 0.034 3.966 6 N -0.147 5.147 7 C -0.474 4.474 8 H 0.121 0.879 9 C -0.164 4.164 10 N -0.500 5.500 11 Si 0.753 3.247 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.246 3.754 16 O -0.456 6.456 17 C 0.008 3.992 18 N -0.128 5.128 19 C -0.099 4.099 20 C -0.265 4.265 21 C -0.123 4.123 22 C -0.159 4.159 23 N -0.076 5.076 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.185 0.815 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.184 2.239 3.904 5.513 hybrid contribution 0.636 0.610 -0.780 1.177 sum 3.820 2.849 3.124 5.698 Atomic orbital electron populations 1.22938 0.78632 1.01817 1.01686 1.86448 1.21748 1.35452 1.85720 1.23909 0.92252 0.80620 0.70743 1.90530 1.66457 1.36339 1.44828 1.20461 0.87359 0.85168 1.03614 1.43344 1.57411 1.08215 1.05744 1.19549 1.35527 1.09950 0.82398 0.87920 1.25230 0.94624 0.96865 0.99720 1.69838 1.22390 1.29528 1.28287 0.85989 0.79504 0.78898 0.80280 1.19612 1.20778 1.19729 1.19954 0.83412 0.87635 0.84447 1.90632 1.54053 1.69183 1.31748 1.21423 1.04522 0.95463 0.77842 1.48222 1.08529 1.44391 1.11622 1.22240 0.94049 0.99750 0.93863 1.20010 0.96424 1.13812 0.96295 1.19965 0.97821 0.98667 0.95868 1.23722 0.95178 0.99682 0.97349 1.77555 1.10120 1.19893 0.99992 0.93105 0.92606 0.89580 0.85764 0.90050 0.91402 0.87289 0.86870 0.81502 0.92619 0.92361 0.92631 0.80840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.27 10.57 -39.25 -0.41 -8.69 16 3 C 0.48 12.16 6.13 36.01 0.22 12.38 16 4 O -0.50 -14.08 15.79 -18.75 -0.30 -14.37 16 5 C 0.16 3.80 5.14 -5.19 -0.03 3.78 16 6 N -0.43 -10.43 2.18 -116.10 -0.25 -10.68 16 7 C -0.35 -8.21 9.15 -14.93 -0.14 -8.34 16 8 H 0.10 2.18 6.55 -52.48 -0.34 1.83 16 9 C 0.04 0.99 4.90 -17.47 -0.09 0.90 16 10 N -0.86 -21.70 9.24 55.50 0.51 -21.19 16 11 Si 0.93 18.22 29.60 -169.99 -5.03 13.19 16 12 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 15 C 0.46 11.10 7.45 -10.99 -0.08 11.02 16 16 O -0.57 -15.62 15.38 5.55 0.09 -15.53 16 17 C 0.13 2.60 5.43 -5.19 -0.03 2.57 16 18 N -0.35 -6.82 3.40 -62.54 -0.21 -7.03 16 19 C 0.05 0.75 11.36 -17.22 -0.20 0.56 16 20 C -0.25 -3.88 6.10 -105.05 -0.64 -4.52 16 21 C -0.07 -0.72 10.37 36.01 0.37 -0.34 16 22 C 0.03 0.48 11.96 -17.37 -0.21 0.27 16 23 N -0.26 -5.51 11.64 30.62 0.36 -5.16 16 24 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 25 H 0.06 1.03 8.13 -51.93 -0.42 0.60 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.12 2.90 6.35 -51.93 -0.33 2.57 16 28 H 0.08 1.84 7.60 -51.93 -0.39 1.44 16 29 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.11 2.15 8.10 -51.93 -0.42 1.73 16 31 H 0.11 1.80 7.63 -51.93 -0.40 1.41 16 32 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.17 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -33.82 317.15 -4.62 -38.44 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.40 Total: 6.12 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 0.26 Total: 20.12 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.40 Total: -44.06 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.63 Total: -38.59 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.82 -4.62 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.685 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds