Wall clock time and date at job start Tue Mar 31 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 116.99958 * 2 1 4 4 O 1.20829 * 120.00284 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99785 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47167 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99843 * 264.09122 * 6 5 3 8 8 H 1.08007 * 119.99496 * 196.60486 * 7 6 5 9 9 C 1.38947 * 120.00309 * 16.59708 * 7 6 5 10 10 N 1.31408 * 119.99694 * 20.79544 * 9 7 6 11 11 Si 1.86796 * 120.00021 * 200.79548 * 9 7 6 12 12 H 1.48497 * 109.47485 * 59.99999 * 11 9 7 13 13 H 1.48510 * 109.46844 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47268 * 299.99841 * 11 9 7 15 15 C 1.34776 * 120.00043 * 84.07956 * 6 5 3 16 16 O 1.21291 * 119.99923 * 0.02562 * 15 6 5 17 17 C 1.50701 * 119.99986 * 179.97438 * 15 6 5 18 18 N 1.46504 * 109.47260 * 180.02562 * 17 15 6 19 19 C 1.34951 * 126.03323 * 125.30977 * 18 17 15 20 20 C 1.35317 * 107.73921 * 180.14728 * 19 18 17 21 21 C 1.50705 * 126.03472 * 179.87061 * 20 19 18 22 22 C 1.39872 * 107.92219 * 359.61630 * 20 19 18 23 23 N 1.30833 * 108.20424 * 0.23860 * 22 20 19 24 24 H 1.09005 * 109.46964 * 299.99769 * 1 2 3 25 25 H 1.09001 * 109.46722 * 59.99800 * 1 2 3 26 26 H 1.08995 * 109.46980 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47359 * 60.00013 * 5 3 2 28 28 H 1.08997 * 109.47022 * 299.99953 * 5 3 2 29 29 H 0.97004 * 120.00392 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.46700 * 60.00912 * 17 15 6 31 31 H 1.08995 * 109.47444 * 300.00753 * 17 15 6 32 32 H 1.07998 * 126.13029 * 0.02562 * 19 18 17 33 33 H 1.08996 * 109.47601 * 269.71632 * 21 20 19 34 34 H 1.09008 * 109.46468 * 149.71741 * 21 20 19 35 35 H 1.08998 * 109.47252 * 29.72759 * 21 20 19 36 36 H 1.08001 * 125.89555 * 180.21710 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2929 3.3031 -1.1806 8 1 4.8465 4.2305 -1.1720 9 6 3.8962 2.7419 -2.3882 10 7 2.9077 1.8765 -2.4172 11 14 4.7679 3.2176 -3.9703 12 1 6.2071 2.8667 -3.8673 13 1 4.1596 2.4852 -5.1101 14 1 4.6295 4.6794 -4.1915 15 6 4.0579 3.3593 1.1615 16 8 3.7830 2.8076 2.2061 17 6 4.4858 4.8043 1.1623 18 7 4.4888 5.3120 2.5366 19 6 5.5293 5.8997 3.1635 20 6 5.1285 6.2203 4.4156 21 6 5.9688 6.8928 5.4705 22 6 3.7949 5.8226 4.5557 23 7 3.4103 5.2780 3.4300 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9558 0.7809 -0.8908 28 1 3.9564 0.7805 0.8891 29 1 2.6309 1.4843 -3.2601 30 1 3.7908 5.3893 0.5600 31 1 5.4884 4.8866 0.7428 32 1 6.5072 6.0800 2.7422 33 1 6.4814 6.1358 6.0639 34 1 5.3279 7.4904 6.1190 35 1 6.7045 7.5389 4.9917 36 1 3.1876 5.9438 5.4405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348805116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:59 Heat of formation + Delta-G solvation = -44.818945 kcal Electronic energy + Delta-G solvation = -22404.016561 eV Core-core repulsion = 18890.458329 eV Total energy + Delta-G solvation = -3513.558232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09712 -41.32536 -40.07560 -37.34987 -36.58286 -34.49595 -33.55157 -32.42941 -30.82084 -29.09000 -27.83447 -26.80718 -25.91329 -22.77514 -21.82200 -21.27066 -20.93556 -19.06435 -18.50113 -18.32245 -17.45053 -17.31053 -16.98291 -16.36698 -16.05833 -15.95736 -15.38760 -14.98968 -14.49915 -14.32730 -14.23281 -14.01243 -13.80329 -13.56178 -13.31818 -13.13276 -12.96726 -12.86605 -12.60624 -12.52400 -12.45255 -12.14571 -11.62402 -11.55943 -11.30297 -10.97149 -10.82042 -10.19649 -9.95102 -9.13067 -8.41211 -5.99051 1.07673 1.40078 1.52054 1.60206 1.62722 1.67822 1.74961 2.00437 2.19685 2.31918 2.77980 3.07204 3.79476 4.02757 4.06177 4.22245 4.23187 4.30276 4.35989 4.36700 4.47802 4.56447 4.64260 4.67630 4.72615 5.02649 5.08051 5.31217 5.36348 5.39791 5.56545 5.65828 5.85857 6.19639 6.29468 6.92098 7.02002 7.16086 7.38687 7.79916 8.65878 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.005806 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.547589 B = 4821.633131 C = 6183.393830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.485 3.515 4 O -0.538 6.538 5 C 0.157 3.843 6 N -0.434 5.434 7 C -0.363 4.363 8 H 0.126 0.874 9 C -0.002 4.002 10 N -0.896 5.896 11 Si 1.000 3.000 12 H -0.257 1.257 13 H -0.291 1.291 14 H -0.267 1.267 15 C 0.444 3.556 16 O -0.613 6.613 17 C 0.141 3.859 18 N -0.366 5.366 19 C 0.046 3.954 20 C -0.254 4.254 21 C -0.061 4.061 22 C 0.024 3.976 23 N -0.328 5.328 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.136 0.864 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.273 0.727 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.209 0.791 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 3.977 4.192 8.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.328 3.672 4 O -0.426 6.426 5 C 0.031 3.969 6 N -0.154 5.154 7 C -0.489 4.489 8 H 0.144 0.856 9 C -0.204 4.204 10 N -0.534 5.534 11 Si 0.824 3.176 12 H -0.182 1.182 13 H -0.217 1.217 14 H -0.192 1.192 15 C 0.233 3.767 16 O -0.499 6.499 17 C 0.017 3.983 18 N -0.148 5.148 19 C -0.099 4.099 20 C -0.265 4.265 21 C -0.119 4.119 22 C -0.162 4.162 23 N -0.149 5.149 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.154 0.846 27 H 0.144 0.856 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.171 0.829 32 H 0.226 0.774 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.133 3.263 3.762 7.152 hybrid contribution -0.039 0.245 -0.650 0.695 sum 5.094 3.508 3.112 6.924 Atomic orbital electron populations 1.23294 0.76195 1.04922 1.01105 1.86419 1.24130 1.33816 1.85041 1.24140 0.92760 0.80763 0.69549 1.90497 1.67407 1.37750 1.46973 1.20526 0.86917 0.85740 1.03753 1.43618 1.57013 1.08380 1.06351 1.20127 1.35690 1.10869 0.82234 0.85616 1.26179 0.94779 0.96681 1.02796 1.69958 1.23765 1.30866 1.28802 0.84876 0.78660 0.78466 0.75645 1.18178 1.21672 1.19164 1.20772 0.82880 0.89330 0.83738 1.90586 1.55783 1.70503 1.33032 1.21352 1.06297 0.91958 0.78741 1.48239 1.09262 1.45768 1.11520 1.23039 0.94670 0.98210 0.93967 1.20553 0.95830 1.13039 0.97121 1.20046 0.97852 0.98989 0.94964 1.24311 0.96725 0.98225 0.96983 1.77469 1.12516 1.22892 1.01986 0.93432 0.93499 0.84604 0.85571 0.89593 0.91685 0.88003 0.82884 0.77401 0.91883 0.91067 0.90578 0.78564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.56 113.37 1.20 2.56 16 2 O -0.38 -16.77 10.57 -51.39 -0.54 -17.31 16 3 C 0.48 25.04 6.13 71.24 0.44 25.48 16 4 O -0.54 -31.56 15.79 21.95 0.35 -31.22 16 5 C 0.16 7.64 5.14 85.63 0.44 8.08 16 6 N -0.43 -21.48 2.18 -639.60 -1.39 -22.87 16 7 C -0.36 -16.96 9.15 84.04 0.77 -16.19 16 8 H 0.13 5.11 6.55 -2.91 -0.02 5.09 16 9 C 0.00 -0.09 4.90 84.93 0.42 0.33 16 10 N -0.90 -45.49 9.24 21.66 0.20 -45.29 16 11 Si 1.00 36.52 29.60 68.60 2.03 38.55 16 12 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 13 H -0.29 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 15 C 0.44 21.85 7.45 87.66 0.65 22.50 16 16 O -0.61 -34.46 15.38 -3.06 -0.05 -34.50 16 17 C 0.14 5.48 5.43 85.63 0.47 5.95 16 18 N -0.37 -14.21 3.40 -351.79 -1.20 -15.41 16 19 C 0.05 1.36 11.36 83.54 0.95 2.31 16 20 C -0.25 -7.21 6.10 -20.14 -0.12 -7.33 16 21 C -0.06 -1.13 10.37 71.24 0.74 -0.39 16 22 C 0.02 0.81 11.96 85.24 1.02 1.83 16 23 N -0.33 -14.40 11.64 -57.02 -0.66 -15.07 16 24 H 0.05 1.70 8.13 -2.38 -0.02 1.68 16 25 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 26 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 27 H 0.13 6.02 6.35 -2.39 -0.02 6.01 16 28 H 0.09 4.02 7.60 -2.39 -0.02 4.00 16 29 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 30 H 0.10 4.04 8.10 -2.39 -0.02 4.02 16 31 H 0.15 4.53 7.63 -2.39 -0.02 4.51 16 32 H 0.21 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.20 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -76.16 317.15 6.79 -69.37 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 1.10 Total: 28.62 kcal Atomic # 6 Polarization: 38.16 SS G_CDS: 6.96 Total: 45.12 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -3.05 Total: -98.63 kcal Atomic # 8 Polarization: -82.78 SS G_CDS: -0.24 Total: -83.03 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -76.16 6.79 -69.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.549 kcal (2) G-P(sol) polarization free energy of solvation -76.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds