Wall clock time and date at job start Tue Mar 31 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00020 * 2 1 4 4 C 1.53005 * 109.46847 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46901 * 65.00274 * 4 3 2 6 6 C 1.46498 * 119.99635 * 269.99212 * 5 4 3 7 7 C 1.50696 * 109.47629 * 270.00417 * 6 5 4 8 8 H 1.08004 * 119.99529 * 359.97438 * 7 6 5 9 9 C 1.37868 * 120.00312 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00055 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00105 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47124 * 59.99877 * 11 9 7 13 13 H 1.48500 * 109.47370 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47286 * 300.00098 * 11 9 7 15 15 C 1.38427 * 120.00295 * 89.99945 * 5 4 3 16 16 N 1.32604 * 119.13694 * 359.97438 * 15 5 4 17 17 C 1.32091 * 120.96988 * 179.97438 * 16 15 5 18 18 C 1.38841 * 119.24257 * 0.02562 * 17 16 15 19 19 C 1.39487 * 118.41680 * 0.25015 * 18 17 16 20 20 C 1.48381 * 120.50704 * 179.75072 * 19 18 17 21 21 O 1.21387 * 120.00244 * 359.97438 * 20 19 18 22 22 O 1.34644 * 120.00332 * 179.97438 * 20 19 18 23 23 N 1.32249 * 119.13813 * 179.97438 * 15 5 4 24 24 H 1.09003 * 109.47011 * 60.00477 * 1 2 3 25 25 H 1.08995 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47583 * 300.00484 * 1 2 3 27 27 H 1.08994 * 109.47209 * 59.99972 * 3 2 1 28 28 H 1.09001 * 109.46815 * 299.99760 * 3 2 1 29 29 H 1.08998 * 109.46940 * 304.99887 * 4 3 2 30 30 H 1.09003 * 109.46409 * 184.99539 * 4 3 2 31 31 H 1.09004 * 109.47302 * 30.00413 * 6 5 4 32 32 H 1.08995 * 109.47072 * 150.00146 * 6 5 4 33 33 H 0.96999 * 119.99804 * 179.97438 * 10 9 7 34 34 H 1.07995 * 120.38236 * 180.02562 * 17 16 15 35 35 H 1.08002 * 120.78813 * 179.97438 * 18 17 16 36 36 H 0.96698 * 117.00068 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3403 7 6 5.5016 -1.2982 -0.9412 8 1 6.2203 -0.5462 -0.6505 9 6 5.8613 -2.6292 -0.9482 10 7 4.9863 -3.5449 -1.3026 11 14 7.5912 -3.1319 -0.4541 12 1 7.8538 -2.6966 0.9412 13 1 7.7226 -4.6083 -0.5446 14 1 8.5725 -2.4904 -1.3656 15 6 4.2711 1.3537 -2.3490 16 7 4.1475 2.6702 -2.2493 17 6 4.4193 3.4580 -3.2741 18 6 4.8397 2.8934 -4.4708 19 6 4.9542 1.5053 -4.5458 20 6 5.3941 0.8526 -5.8037 21 8 5.6570 1.5274 -6.7779 22 8 5.5016 -0.4881 -5.8646 23 7 4.6684 0.7755 -3.4701 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8507 0.5685 0.8427 30 1 3.9784 2.1765 0.0901 31 1 3.3858 -1.3632 -0.6713 32 1 3.9138 -1.2123 -2.3643 33 1 5.2395 -4.4812 -1.3079 34 1 4.3158 4.5290 -3.1822 35 1 5.0682 3.5140 -5.3247 36 1 5.7915 -0.8675 -6.7055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723295662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:53 Heat of formation + Delta-G solvation = -86.032498 kcal Electronic energy + Delta-G solvation = -22229.028464 eV Core-core repulsion = 18713.683078 eV Total energy + Delta-G solvation = -3515.345386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.14217 -40.90983 -39.07918 -37.45924 -37.18300 -34.95147 -34.58448 -32.46221 -30.99746 -28.60338 -27.29355 -26.91435 -25.36258 -24.17134 -23.40547 -21.73396 -19.72680 -18.88051 -18.52743 -18.20851 -17.52894 -17.04685 -16.89943 -16.75199 -16.42988 -16.23230 -15.95545 -15.48362 -15.08025 -14.84764 -14.38686 -14.32683 -13.54955 -13.44002 -13.08314 -12.76071 -12.73441 -12.69222 -12.51951 -12.19226 -12.13179 -11.97277 -11.85337 -11.84327 -11.74909 -11.03802 -10.58448 -10.53646 -10.07864 -8.74186 -8.08832 -6.26205 -0.52601 0.32443 1.37751 1.39236 1.41035 1.48365 1.74516 1.99681 2.42588 2.92258 3.02814 3.16420 3.23900 3.56389 3.98055 4.11572 4.19423 4.26045 4.40435 4.43501 4.52847 4.57811 4.63745 4.76086 4.84257 4.97252 5.14925 5.27830 5.35023 5.41863 5.72041 5.94722 6.06028 6.17600 6.33418 6.67177 6.81017 6.89005 7.33305 7.45194 8.93257 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.008135 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.503800 B = 3441.038921 C = 5361.286287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.056 3.944 4 C 0.132 3.868 5 N -0.564 5.564 6 C 0.287 3.713 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.959 3.041 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.550 3.450 16 N -0.561 5.561 17 C 0.202 3.798 18 C -0.237 4.237 19 C 0.154 3.846 20 C 0.550 3.450 21 O -0.515 6.515 22 O -0.494 6.494 23 N -0.551 5.551 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.024 0.976 32 H 0.009 0.991 33 H 0.265 0.735 34 H 0.229 0.771 35 H 0.179 0.821 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 13.844 -2.328 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.336 6.336 3 C -0.022 4.022 4 C 0.009 3.991 5 N -0.276 5.276 6 C 0.166 3.834 7 C -0.573 4.573 8 H 0.063 0.937 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.784 3.216 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.204 1.204 15 C 0.194 3.806 16 N -0.285 5.285 17 C 0.032 3.968 18 C -0.265 4.265 19 C 0.006 3.994 20 C 0.392 3.608 21 O -0.404 6.404 22 O -0.305 6.305 23 N -0.277 5.277 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.197 0.803 36 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -5.072 13.017 -1.261 14.027 hybrid contribution 1.024 -0.501 -1.226 1.675 sum -4.048 12.516 -2.488 13.387 Atomic orbital electron populations 1.22838 0.80096 1.03109 1.00617 1.88029 1.21128 1.28923 1.95491 1.23022 0.93575 0.84470 1.01116 1.21605 0.92888 0.99720 0.84904 1.46740 1.65810 1.06627 1.08373 1.18711 0.95135 0.73369 0.96170 1.21605 0.98082 0.92270 1.45363 0.93698 1.25694 1.01173 0.96364 0.95250 1.70054 1.36212 1.01286 1.48756 0.85607 0.79880 0.77179 0.78899 1.19155 1.20352 1.20424 1.19454 0.88750 0.85886 0.86481 1.67952 1.23413 1.03008 1.34092 1.23880 0.86013 1.01725 0.85181 1.22716 1.07408 0.93214 1.03117 1.20464 0.96652 0.91881 0.90389 1.20565 0.72997 0.80846 0.86379 1.90834 1.47402 1.65602 1.36571 1.84801 1.79265 1.21563 1.44916 1.67984 1.18147 1.41386 1.00150 0.94164 0.89809 0.92008 0.89475 0.93811 0.90664 0.87020 0.95803 0.97255 0.92629 0.75470 0.80341 0.70697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.42 -15.08 9.53 -148.98 -1.42 -16.50 16 3 C 0.06 1.69 6.28 71.98 0.45 2.15 16 4 C 0.13 4.68 5.82 86.38 0.50 5.19 16 5 N -0.56 -25.28 2.52 -715.29 -1.80 -27.08 16 6 C 0.29 15.78 4.98 85.63 0.43 16.21 16 7 C -0.53 -31.09 9.39 25.60 0.24 -30.85 16 8 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 9 C 0.01 0.83 5.46 84.65 0.46 1.30 16 10 N -0.92 -56.25 13.29 21.44 0.28 -55.96 16 11 Si 0.96 45.57 29.54 68.60 2.03 47.59 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 C 0.55 23.13 8.17 261.54 2.14 25.26 16 16 N -0.56 -18.30 9.09 -198.00 -1.80 -20.10 16 17 C 0.20 4.82 11.30 84.80 0.96 5.77 16 18 C -0.24 -6.34 9.71 22.72 0.22 -6.11 16 19 C 0.15 5.61 6.79 41.96 0.28 5.89 16 20 C 0.55 18.78 8.34 70.52 0.59 19.37 16 21 O -0.52 -17.09 17.20 20.20 0.35 -16.74 16 22 O -0.49 -16.41 13.28 -55.53 -0.74 -17.15 16 23 N -0.55 -24.66 8.92 -187.16 -1.67 -26.33 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.83 8.07 -2.39 -0.02 2.82 16 30 H 0.11 3.42 7.33 -2.39 -0.02 3.40 16 31 H 0.02 1.41 7.12 -2.38 -0.02 1.39 16 32 H 0.01 0.58 7.33 -2.39 -0.02 0.56 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.23 2.65 8.06 -2.91 -0.02 2.62 16 35 H 0.18 3.64 7.73 -2.91 -0.02 3.62 16 36 H 0.43 8.80 9.11 -74.06 -0.67 8.13 16 Total: -1.00 -77.99 323.51 3.19 -74.80 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.44 Total: 11.27 kcal Atomic # 6 Polarization: 38.67 SS G_CDS: 7.52 Total: 46.20 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -4.99 Total: -129.47 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -1.81 Total: -50.39 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -77.99 3.19 -74.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723295662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.236 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds