Wall clock time and date at job start Tue Mar 31 2020 02:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99443 * 2 1 3 5 5 C 1.35046 * 124.88513 * 274.72576 * 4 2 1 6 6 C 1.35352 * 107.24509 * 179.89442 * 5 4 2 7 7 C 1.41548 * 105.50140 * 0.34930 * 6 5 4 8 8 C 1.47573 * 126.52448 * 179.76002 * 7 6 5 9 9 O 1.21494 * 120.00273 * 359.97438 * 8 7 6 10 10 O 1.34734 * 120.00174 * 179.97438 * 8 7 6 11 11 C 1.45195 * 117.00031 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47095 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00032 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99955 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99842 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99931 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99857 * 179.97438 * 15 14 12 18 18 N 1.31405 * 120.00344 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99740 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47102 * 120.00187 * 19 17 15 22 22 H 1.48501 * 109.46894 * 239.99834 * 19 17 15 23 23 N 1.28479 * 124.87698 * 95.02590 * 4 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08001 * 126.37421 * 0.03235 * 5 4 2 32 32 H 1.08000 * 127.24591 * 180.09084 * 6 5 4 33 33 H 1.09001 * 109.47509 * 300.00319 * 11 10 8 34 34 H 1.09002 * 109.47267 * 60.00797 * 11 10 8 35 35 H 0.96992 * 120.00249 * 359.97438 * 14 12 11 36 36 H 0.97005 * 120.00392 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1897 -0.1136 2.4051 6 6 2.6493 -1.0705 3.2449 7 6 2.7481 -2.2454 2.4617 8 6 3.2090 -3.5703 2.9200 9 8 3.5511 -3.7284 4.0750 10 8 3.2503 -4.6046 2.0576 11 6 3.7147 -5.8783 2.5776 12 6 3.6933 -6.9079 1.4774 13 8 3.3235 -6.5986 0.3644 14 7 4.0851 -8.1725 1.7302 15 6 4.0661 -9.1090 0.7291 16 1 3.7369 -8.8336 -0.2619 17 6 4.4705 -10.4126 0.9896 18 7 4.8716 -10.7476 2.1953 19 14 4.4440 -11.6889 -0.3742 20 1 3.9544 -11.0628 -1.6286 21 1 5.8162 -12.2156 -0.5860 22 1 3.5397 -12.8030 0.0080 23 7 2.3503 -1.9307 1.2445 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.9942 0.9186 2.6558 32 1 2.8936 -0.9597 4.2910 33 1 4.7324 -5.7685 2.9523 34 1 3.0614 -6.1994 3.3889 35 1 4.3811 -8.4197 2.6201 36 1 5.1543 -11.6576 2.3770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733587770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:56 Heat of formation + Delta-G solvation = -66.025565 kcal Electronic energy + Delta-G solvation = -20995.797431 eV Core-core repulsion = 17481.319611 eV Total energy + Delta-G solvation = -3514.477820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.78792 -41.46145 -40.01292 -37.55579 -36.78613 -36.05519 -33.44212 -32.00800 -31.72959 -29.99211 -28.22446 -26.83460 -25.50412 -23.67959 -21.70784 -21.47888 -21.07599 -20.09032 -19.03617 -18.25767 -17.87222 -17.80025 -17.25314 -16.84432 -16.48839 -15.81058 -15.69273 -15.39509 -14.82614 -14.77288 -14.18022 -14.09411 -13.78820 -13.70062 -13.57697 -13.25582 -13.05850 -12.95273 -12.48433 -12.37138 -12.15748 -12.11837 -12.01411 -11.91435 -11.89485 -11.60437 -10.54314 -10.38016 -10.14809 -10.13446 -8.53712 -6.04616 0.18005 1.11579 1.13885 1.33532 1.41846 1.56045 1.67372 1.84041 2.01787 2.29347 2.98571 3.11342 3.29950 3.66801 3.84688 3.86129 3.95659 4.05594 4.12627 4.18534 4.22462 4.56926 4.65193 4.67090 4.72927 4.82093 4.87861 5.13867 5.16913 5.23221 5.28607 5.35691 5.85288 5.87863 6.40421 6.50947 6.90480 7.01300 7.37435 7.91754 8.63745 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030073 B = 0.003062 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.844982 B = 9142.999350 C = 9908.686069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 C -0.156 4.156 4 N -0.265 5.265 5 C 0.006 3.994 6 C -0.184 4.184 7 C -0.041 4.041 8 C 0.550 3.450 9 O -0.519 6.519 10 O -0.336 6.336 11 C 0.069 3.931 12 C 0.437 3.563 13 O -0.618 6.618 14 N -0.556 5.556 15 C -0.339 4.339 16 H 0.083 0.917 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 1.000 3.000 20 H -0.272 1.272 21 H -0.268 1.268 22 H -0.268 1.268 23 N -0.270 5.270 24 H 0.040 0.960 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.180 0.820 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.401 0.599 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 25.811 0.681 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 C -0.214 4.214 4 N -0.056 5.056 5 C -0.136 4.136 6 C -0.211 4.211 7 C -0.196 4.196 8 C 0.394 3.606 9 O -0.407 6.407 10 O -0.250 6.250 11 C -0.008 4.008 12 C 0.223 3.777 13 O -0.505 6.505 14 N -0.194 5.194 15 C -0.468 4.468 16 H 0.101 0.899 17 C -0.209 4.209 18 N -0.555 5.555 19 Si 0.822 3.178 20 H -0.197 1.197 21 H -0.193 1.193 22 H -0.193 1.193 23 N -0.108 5.108 24 H 0.060 0.940 25 H 0.127 0.873 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.251 0.749 32 H 0.198 0.802 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.235 0.765 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.889 25.334 -0.792 26.266 hybrid contribution 0.473 -1.067 0.843 1.440 sum -6.417 24.267 0.051 25.101 Atomic orbital electron populations 1.22226 0.91500 1.02680 1.05429 1.22105 0.96622 0.94778 0.83806 1.22219 1.02093 0.90900 1.06177 1.46432 1.42913 1.04827 1.11473 1.23504 1.04007 1.02254 0.83849 1.22051 1.07308 0.89437 1.02341 1.20793 1.12724 0.93145 0.92933 1.20122 0.73994 0.83596 0.82913 1.90801 1.46587 1.84384 1.18918 1.86691 1.77232 1.18874 1.42235 1.22620 1.02803 0.80074 0.95284 1.20064 0.84264 0.83857 0.89497 1.90534 1.53558 1.80584 1.25833 1.41719 1.57259 1.07105 1.13279 1.19762 1.44082 0.90153 0.92781 0.89932 1.26151 0.95349 0.99366 1.00073 1.69678 1.43055 1.21416 1.21343 0.84780 0.78544 0.77125 0.77306 1.19661 1.19264 1.19279 1.73775 1.15283 0.99710 1.22047 0.94027 0.87267 0.90267 0.88203 0.89120 0.91939 0.87267 0.74869 0.80237 0.87169 0.87174 0.76459 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.52 71.98 0.69 -0.92 16 2 C 0.13 1.60 3.80 44.99 0.17 1.77 16 3 C -0.16 -0.73 8.80 71.98 0.63 -0.09 16 4 N -0.27 -5.56 3.22 -327.39 -1.05 -6.62 16 5 C 0.01 0.09 10.54 83.53 0.88 0.97 16 6 C -0.18 -4.22 10.81 22.42 0.24 -3.98 16 7 C -0.04 -1.35 7.17 42.42 0.30 -1.04 16 8 C 0.55 21.32 7.97 70.29 0.56 21.88 16 9 O -0.52 -20.30 16.72 19.86 0.33 -19.97 16 10 O -0.34 -14.92 9.77 -50.05 -0.49 -15.41 16 11 C 0.07 2.92 5.95 71.24 0.42 3.34 16 12 C 0.44 23.00 7.86 87.66 0.69 23.69 16 13 O -0.62 -37.97 16.08 15.72 0.25 -37.72 16 14 N -0.56 -29.98 5.29 -306.98 -1.62 -31.60 16 15 C -0.34 -19.76 9.68 84.04 0.81 -18.95 16 16 H 0.08 5.13 7.16 -2.91 -0.02 5.11 16 17 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 18 N -0.91 -49.75 13.05 21.66 0.28 -49.47 16 19 Si 1.00 43.17 29.55 68.60 2.03 45.19 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 N -0.27 -8.71 11.99 -48.22 -0.58 -9.28 16 24 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.09 0.07 7.05 -2.39 -0.02 0.05 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.24 1.00 7.16 -2.91 -0.02 0.98 16 32 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 34 H 0.11 4.11 8.14 -2.39 -0.02 4.10 16 35 H 0.40 20.23 7.90 -92.71 -0.73 19.50 16 36 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -81.06 325.32 5.40 -75.66 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.38 Total: 22.55 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 5.87 Total: 26.67 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -2.97 Total: -96.97 kcal Atomic # 8 Polarization: -73.19 SS G_CDS: 0.10 Total: -73.09 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -81.06 5.40 -75.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733587770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.632 kcal (2) G-P(sol) polarization free energy of solvation -81.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds