Wall clock time and date at job start Tue Mar 31 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34952 * 126.03297 * 2 1 4 4 C 1.35319 * 107.74202 * 180.14858 * 3 2 1 5 5 C 1.50700 * 126.03852 * 179.87395 * 4 3 2 6 6 C 1.53007 * 109.47254 * 269.71876 * 5 4 3 7 7 C 1.50693 * 109.47215 * 184.34254 * 6 5 4 8 8 O 1.21304 * 120.00154 * 5.30832 * 7 6 5 9 9 N 1.34779 * 120.00149 * 185.02752 * 7 6 5 10 10 C 1.37094 * 119.99674 * 354.73475 * 9 7 6 11 11 H 1.08000 * 119.99993 * 320.23357 * 10 9 7 12 12 C 1.38952 * 119.99674 * 140.23931 * 10 9 7 13 13 N 1.31412 * 119.99917 * 163.29190 * 12 10 9 14 14 Si 1.86800 * 120.00350 * 343.28223 * 12 10 9 15 15 H 1.48496 * 109.46714 * 95.37878 * 14 12 10 16 16 H 1.48498 * 109.47419 * 215.38418 * 14 12 10 17 17 H 1.48502 * 109.47090 * 335.38519 * 14 12 10 18 18 C 1.46498 * 119.99994 * 174.73036 * 9 7 6 19 19 C 1.50701 * 109.47143 * 90.00425 * 18 9 7 20 20 O 1.20823 * 119.99786 * 359.97438 * 19 18 9 21 21 O 1.34226 * 120.00153 * 180.02562 * 19 18 9 22 22 C 1.39871 * 107.91981 * 359.61554 * 4 3 2 23 23 N 1.30834 * 108.20479 * 0.23769 * 22 4 3 24 24 H 1.09004 * 109.46489 * 270.25793 * 1 2 3 25 25 H 1.09001 * 109.47179 * 30.25353 * 1 2 3 26 26 H 1.08997 * 109.46638 * 150.25799 * 1 2 3 27 27 H 1.07993 * 126.13078 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46998 * 149.71885 * 5 4 3 29 29 H 1.08993 * 109.47125 * 29.71606 * 5 4 3 30 30 H 1.08994 * 109.46911 * 64.33782 * 6 5 4 31 31 H 1.09001 * 109.46727 * 304.34089 * 6 5 4 32 32 H 0.97001 * 120.00370 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.46891 * 210.00239 * 18 9 7 34 34 H 1.09005 * 109.47223 * 330.00462 * 18 9 7 35 35 H 0.96701 * 117.00260 * 180.02562 * 21 19 18 36 36 H 1.08004 * 125.89699 * 180.26217 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0073 6 6 5.1824 1.8363 -1.4511 7 6 6.4662 2.6254 -1.4560 8 8 7.0484 2.8429 -0.4142 9 7 6.9707 3.0845 -2.6184 10 6 6.3763 2.7435 -3.8057 11 1 6.0036 1.7408 -3.9546 12 6 6.2534 3.6878 -4.8176 13 7 5.9961 3.3032 -6.0476 14 14 6.4538 5.5040 -4.4296 15 1 7.8523 5.9183 -4.7086 16 1 5.5247 6.2963 -5.2748 17 1 6.1438 5.7413 -2.9968 18 6 8.1540 3.9482 -2.6130 19 6 9.3960 3.0991 -2.7008 20 8 9.3022 1.8960 -2.7611 21 8 10.6063 3.6793 -2.7109 22 6 3.5347 -0.7320 0.0035 23 7 2.2892 -1.1327 0.0055 24 1 -0.3632 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3632 -0.8923 -0.5098 27 1 1.9281 2.1194 0.0004 28 1 5.5821 1.0366 0.5090 29 1 4.5441 2.4826 0.5022 30 1 4.3999 2.4125 -1.9446 31 1 5.3316 0.8964 -1.9826 32 1 5.9107 3.9623 -6.7541 33 1 8.1146 4.6237 -3.4675 34 1 8.1756 4.5293 -1.6910 35 1 11.3735 3.0936 -2.7688 36 1 4.4055 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739028672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:09 Heat of formation + Delta-G solvation = -35.895854 kcal Electronic energy + Delta-G solvation = -21847.792151 eV Core-core repulsion = 18334.620853 eV Total energy + Delta-G solvation = -3513.171298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01369 -39.82764 -38.52136 -35.61834 -34.90821 -33.95796 -32.31809 -32.03890 -29.53219 -28.17325 -26.52150 -24.96320 -23.30140 -21.35029 -20.93097 -19.84497 -19.01437 -17.61056 -17.17866 -16.82394 -16.34459 -15.69737 -15.34095 -15.17758 -14.87778 -14.61924 -14.29292 -13.89292 -13.31012 -12.99064 -12.87429 -12.74970 -12.62837 -12.45491 -12.12922 -11.79196 -11.66264 -11.26420 -11.05523 -10.97094 -10.61265 -10.50161 -10.18134 -10.09804 -9.91332 -9.32981 -9.27089 -8.77480 -8.11048 -7.99276 -6.54824 -4.21498 2.02778 2.63756 2.86653 2.94408 2.99390 3.11591 3.15684 3.33734 3.82224 3.99012 4.37270 4.58209 4.90107 4.98566 5.04868 5.23335 5.29675 5.53798 5.64500 5.66385 5.81763 5.88246 5.94877 5.99568 6.17608 6.25286 6.45747 6.72782 6.80266 6.86978 7.03238 7.14360 7.16518 7.84085 7.96953 8.18425 8.53079 8.84438 9.19460 9.52910 10.55661 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.004815 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.280528 B = 5814.336861 C = 6618.851215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.383 5.383 3 C 0.052 3.948 4 C -0.222 4.222 5 C -0.026 4.026 6 C -0.108 4.108 7 C 0.495 3.505 8 O -0.593 6.593 9 N -0.454 5.454 10 C -0.335 4.335 11 H 0.108 0.892 12 C 0.063 3.937 13 N -0.857 5.857 14 Si 0.867 3.133 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.256 1.256 18 C 0.108 3.892 19 C 0.464 3.536 20 O -0.497 6.497 21 O -0.528 6.528 22 C 0.054 3.946 23 N -0.305 5.305 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.277 0.723 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.399 0.601 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 0.199 8.162 10.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.166 5.166 3 C -0.094 4.094 4 C -0.233 4.233 5 C -0.066 4.066 6 C -0.148 4.148 7 C 0.286 3.714 8 O -0.478 6.478 9 N -0.175 5.175 10 C -0.463 4.463 11 H 0.125 0.875 12 C -0.144 4.144 13 N -0.492 5.492 14 Si 0.694 3.306 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.180 1.180 18 C -0.017 4.017 19 C 0.304 3.696 20 O -0.382 6.382 21 O -0.340 6.340 22 C -0.132 4.132 23 N -0.127 5.127 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.189 0.811 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.257 0.743 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.925 -0.745 8.465 10.962 hybrid contribution 1.174 1.252 -0.433 1.770 sum -5.751 0.507 8.032 9.892 Atomic orbital electron populations 1.21777 0.74696 1.04320 1.02892 1.48390 1.06362 1.03990 1.57876 1.22339 0.90948 0.93212 1.02851 1.20244 0.94713 0.94040 1.14333 1.19677 0.92954 0.97704 0.96222 1.21338 0.95572 1.00855 0.97033 1.20654 0.86861 0.81464 0.82380 1.90550 1.63070 1.61878 1.32255 1.43479 1.20856 1.46214 1.07000 1.19120 1.38652 0.98905 0.89577 0.87474 1.25430 0.95411 0.98746 0.94841 1.69712 1.44585 1.35235 0.99668 0.87061 0.78149 0.85326 0.80022 1.19728 1.20822 1.18029 1.21339 0.82548 0.93314 1.04519 1.24486 0.84582 0.88739 0.71785 1.90661 1.86897 1.16328 1.44299 1.84574 1.17084 1.46033 1.86288 1.23838 0.95003 0.94874 0.99469 1.77287 1.01835 1.08366 1.25166 0.91186 0.89618 0.89566 0.81054 0.90657 0.91401 0.89166 0.89499 0.91299 0.88191 0.87119 0.74342 0.80100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 11.47 59.85 0.69 1.55 16 2 N -0.38 -5.02 4.01 -68.16 -0.27 -5.29 16 3 C 0.05 0.68 11.40 -17.22 -0.20 0.48 16 4 C -0.22 -3.32 5.35 -105.05 -0.56 -3.88 16 5 C -0.03 -0.43 5.08 -27.88 -0.14 -0.57 16 6 C -0.11 -2.06 4.42 -27.88 -0.12 -2.18 16 7 C 0.50 11.25 7.61 -10.99 -0.08 11.16 16 8 O -0.59 -14.26 15.54 5.54 0.09 -14.17 16 9 N -0.45 -10.82 1.65 -116.09 -0.19 -11.01 16 10 C -0.34 -8.61 8.97 -14.93 -0.13 -8.74 16 11 H 0.11 2.95 7.48 -52.49 -0.39 2.55 16 12 C 0.06 1.62 5.38 -17.47 -0.09 1.53 16 13 N -0.86 -23.20 13.96 55.50 0.77 -22.42 16 14 Si 0.87 19.02 24.77 -169.99 -4.21 14.81 16 15 H -0.27 -5.69 6.76 56.52 0.38 -5.31 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.26 -5.49 7.07 56.52 0.40 -5.09 16 18 C 0.11 2.37 4.69 -5.19 -0.02 2.35 16 19 C 0.46 9.97 8.40 36.01 0.30 10.27 16 20 O -0.50 -12.20 17.19 -18.75 -0.32 -12.53 16 21 O -0.53 -8.87 13.42 -39.25 -0.53 -9.39 16 22 C 0.05 0.81 11.96 -17.37 -0.21 0.60 16 23 N -0.31 -4.72 12.58 30.63 0.39 -4.33 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.07 1.28 7.90 -51.93 -0.41 0.87 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 31 H 0.09 1.69 7.81 -51.93 -0.41 1.29 16 32 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.10 2.17 3.13 -51.93 -0.16 2.01 16 34 H 0.11 2.24 7.51 -51.93 -0.39 1.85 16 35 H 0.40 4.72 9.10 45.56 0.41 5.14 16 36 H 0.18 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -33.78 316.74 -3.54 -37.32 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -3.46 Total: 9.69 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -0.58 Total: 12.56 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.69 Total: -43.06 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.76 Total: -36.09 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.21 Total: 14.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.78 -3.54 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739028672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.423 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds