Wall clock time and date at job start Tue Mar 31 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34952 * 126.03297 * 2 1 4 4 C 1.35319 * 107.74202 * 180.14858 * 3 2 1 5 5 C 1.50700 * 126.03852 * 179.87395 * 4 3 2 6 6 C 1.53007 * 109.47254 * 269.71876 * 5 4 3 7 7 C 1.50693 * 109.47215 * 184.34254 * 6 5 4 8 8 O 1.21304 * 120.00154 * 5.30832 * 7 6 5 9 9 N 1.34779 * 120.00149 * 185.02752 * 7 6 5 10 10 C 1.37094 * 119.99674 * 354.73475 * 9 7 6 11 11 H 1.08000 * 119.99993 * 320.23357 * 10 9 7 12 12 C 1.38952 * 119.99674 * 140.23931 * 10 9 7 13 13 N 1.31412 * 119.99917 * 163.29190 * 12 10 9 14 14 Si 1.86800 * 120.00350 * 343.28223 * 12 10 9 15 15 H 1.48496 * 109.46714 * 95.37878 * 14 12 10 16 16 H 1.48498 * 109.47419 * 215.38418 * 14 12 10 17 17 H 1.48502 * 109.47090 * 335.38519 * 14 12 10 18 18 C 1.46498 * 119.99994 * 174.73036 * 9 7 6 19 19 C 1.50701 * 109.47143 * 90.00425 * 18 9 7 20 20 O 1.20823 * 119.99786 * 359.97438 * 19 18 9 21 21 O 1.34226 * 120.00153 * 180.02562 * 19 18 9 22 22 C 1.39871 * 107.91981 * 359.61554 * 4 3 2 23 23 N 1.30834 * 108.20479 * 0.23769 * 22 4 3 24 24 H 1.09004 * 109.46489 * 270.25793 * 1 2 3 25 25 H 1.09001 * 109.47179 * 30.25353 * 1 2 3 26 26 H 1.08997 * 109.46638 * 150.25799 * 1 2 3 27 27 H 1.07993 * 126.13078 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.46998 * 149.71885 * 5 4 3 29 29 H 1.08993 * 109.47125 * 29.71606 * 5 4 3 30 30 H 1.08994 * 109.46911 * 64.33782 * 6 5 4 31 31 H 1.09001 * 109.46727 * 304.34089 * 6 5 4 32 32 H 0.97001 * 120.00370 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.46891 * 210.00239 * 18 9 7 34 34 H 1.09005 * 109.47223 * 330.00462 * 18 9 7 35 35 H 0.96701 * 117.00260 * 180.02562 * 21 19 18 36 36 H 1.08004 * 125.89699 * 180.26217 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0073 6 6 5.1824 1.8363 -1.4511 7 6 6.4662 2.6254 -1.4560 8 8 7.0484 2.8429 -0.4142 9 7 6.9707 3.0845 -2.6184 10 6 6.3763 2.7435 -3.8057 11 1 6.0036 1.7408 -3.9546 12 6 6.2534 3.6878 -4.8176 13 7 5.9961 3.3032 -6.0476 14 14 6.4538 5.5040 -4.4296 15 1 7.8523 5.9183 -4.7086 16 1 5.5247 6.2963 -5.2748 17 1 6.1438 5.7413 -2.9968 18 6 8.1540 3.9482 -2.6130 19 6 9.3960 3.0991 -2.7008 20 8 9.3022 1.8960 -2.7611 21 8 10.6063 3.6793 -2.7109 22 6 3.5347 -0.7320 0.0035 23 7 2.2892 -1.1327 0.0055 24 1 -0.3632 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3632 -0.8923 -0.5098 27 1 1.9281 2.1194 0.0004 28 1 5.5821 1.0366 0.5090 29 1 4.5441 2.4826 0.5022 30 1 4.3999 2.4125 -1.9446 31 1 5.3316 0.8964 -1.9826 32 1 5.9107 3.9623 -6.7541 33 1 8.1146 4.6237 -3.4675 34 1 8.1756 4.5293 -1.6910 35 1 11.3735 3.0936 -2.7688 36 1 4.4055 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739028672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:09 Heat of formation + Delta-G solvation = -59.860013 kcal Electronic energy + Delta-G solvation = -21848.831315 eV Core-core repulsion = 18334.620853 eV Total energy + Delta-G solvation = -3514.210462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08134 -41.52860 -40.24490 -37.24961 -36.69421 -35.17712 -33.99922 -33.43183 -30.91727 -29.59881 -27.64271 -26.77803 -24.69722 -22.92699 -21.94843 -21.07392 -20.77246 -19.24822 -18.96531 -18.35947 -17.61338 -17.34683 -16.92774 -16.57430 -16.27506 -16.18824 -15.68690 -15.25277 -14.78497 -14.49860 -14.36053 -14.06552 -13.78028 -13.66672 -13.43641 -13.41278 -12.93093 -12.87571 -12.65115 -12.56445 -12.27940 -11.95749 -11.90500 -11.66970 -11.39334 -11.14635 -10.58478 -10.30456 -9.89116 -9.22707 -8.50134 -6.21912 0.99192 1.17330 1.22646 1.35117 1.46871 1.66614 1.75980 1.84022 2.12503 2.17472 2.67569 2.99719 3.70367 3.90585 4.05969 4.08593 4.24232 4.33493 4.39508 4.42635 4.48380 4.54753 4.72242 4.73920 4.85251 4.95119 5.01497 5.26659 5.40130 5.46059 5.58966 5.73833 6.05583 6.17304 6.21445 6.76744 6.90874 7.00898 7.29389 7.67020 8.63945 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.004815 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.280528 B = 5814.336861 C = 6618.851215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.382 5.382 3 C 0.063 3.937 4 C -0.248 4.248 5 C -0.010 4.010 6 C -0.100 4.100 7 C 0.489 3.511 8 O -0.607 6.607 9 N -0.464 5.464 10 C -0.337 4.337 11 H 0.073 0.927 12 C 0.023 3.977 13 N -0.900 5.900 14 Si 0.923 3.077 15 H -0.252 1.252 16 H -0.278 1.278 17 H -0.246 1.246 18 C 0.097 3.903 19 C 0.469 3.531 20 O -0.537 6.537 21 O -0.509 6.509 22 C 0.041 3.959 23 N -0.335 5.335 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.206 0.794 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.282 0.718 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.424 0.576 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 2.139 9.009 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.083 4.083 4 C -0.259 4.259 5 C -0.049 4.049 6 C -0.140 4.140 7 C 0.281 3.719 8 O -0.492 6.492 9 N -0.186 5.186 10 C -0.464 4.464 11 H 0.091 0.909 12 C -0.181 4.181 13 N -0.536 5.536 14 Si 0.747 3.253 15 H -0.178 1.178 16 H -0.204 1.204 17 H -0.169 1.169 18 C -0.027 4.027 19 C 0.311 3.689 20 O -0.426 6.426 21 O -0.322 6.322 22 C -0.144 4.144 23 N -0.157 5.157 24 H 0.107 0.893 25 H 0.131 0.869 26 H 0.106 0.894 27 H 0.222 0.778 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.148 0.852 35 H 0.286 0.714 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.399 1.189 9.322 11.961 hybrid contribution 1.349 0.610 -0.685 1.631 sum -6.051 1.799 8.637 10.698 Atomic orbital electron populations 1.22185 0.71979 1.05817 1.04625 1.48805 1.07939 1.03322 1.56397 1.22826 0.90343 0.94586 1.00584 1.20177 0.95074 0.93848 1.16833 1.19457 0.93274 0.98196 0.93954 1.21332 0.94028 0.99625 0.99011 1.21251 0.87620 0.81104 0.81913 1.90526 1.63713 1.62421 1.32539 1.43536 1.21783 1.46716 1.06561 1.18838 1.39299 0.97809 0.90476 0.90882 1.26063 0.94899 1.02964 0.94224 1.69806 1.46102 1.36945 1.00739 0.86164 0.79145 0.79685 0.80345 1.17786 1.20388 1.16924 1.21486 0.82332 0.93280 1.05651 1.24313 0.85780 0.87943 0.70884 1.90658 1.87690 1.17901 1.46361 1.84487 1.16623 1.45908 1.85200 1.24064 0.95420 0.95362 0.99582 1.77227 1.02227 1.09935 1.26330 0.89308 0.86906 0.89356 0.77764 0.91920 0.90588 0.88771 0.90738 0.90839 0.87725 0.85224 0.71421 0.79414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 11.47 127.77 1.47 2.76 16 2 N -0.38 -9.35 4.01 -369.55 -1.48 -10.83 16 3 C 0.06 1.54 11.40 83.54 0.95 2.49 16 4 C -0.25 -7.27 5.35 -20.14 -0.11 -7.38 16 5 C -0.01 -0.31 5.08 29.85 0.15 -0.16 16 6 C -0.10 -3.85 4.42 29.85 0.13 -3.72 16 7 C 0.49 22.17 7.61 87.65 0.67 22.84 16 8 O -0.61 -28.80 15.54 -3.10 -0.05 -28.85 16 9 N -0.46 -22.01 1.65 -639.59 -1.06 -23.06 16 10 C -0.34 -17.56 8.97 84.04 0.75 -16.81 16 11 H 0.07 4.22 7.48 -2.91 -0.02 4.20 16 12 C 0.02 1.16 5.38 84.93 0.46 1.62 16 13 N -0.90 -49.20 13.96 21.66 0.30 -48.90 16 14 Si 0.92 37.87 24.77 68.60 1.70 39.57 16 15 H -0.25 -9.58 6.76 99.48 0.67 -8.90 16 16 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.25 -9.63 7.07 99.48 0.70 -8.93 16 18 C 0.10 4.11 4.69 85.63 0.40 4.51 16 19 C 0.47 19.53 8.40 71.24 0.60 20.13 16 20 O -0.54 -26.38 17.19 21.97 0.38 -26.00 16 21 O -0.51 -15.70 13.42 -51.38 -0.69 -16.39 16 22 C 0.04 1.23 11.96 85.24 1.02 2.25 16 23 N -0.33 -10.23 12.58 -57.02 -0.72 -10.95 16 24 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.21 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.06 2.15 7.90 -2.39 -0.02 2.13 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.09 3.51 8.04 -2.39 -0.02 3.49 16 31 H 0.07 3.04 7.81 -2.39 -0.02 3.02 16 32 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.11 4.29 3.13 -2.39 -0.01 4.29 16 34 H 0.13 4.94 7.51 -2.38 -0.02 4.92 16 35 H 0.42 8.80 9.10 -74.06 -0.67 8.12 16 36 H 0.19 5.04 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -73.13 316.74 5.28 -67.84 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.41 Total: 29.04 kcal Atomic # 6 Polarization: 22.04 SS G_CDS: 6.49 Total: 28.53 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -2.95 Total: -93.74 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: -0.36 Total: -71.24 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.70 Total: 39.57 kcal Total: -73.13 5.28 -67.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739028672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.984 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds