Wall clock time and date at job start Tue Mar 31 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.20827 * 120.00517 * 359.97438 * 5 4 2 7 7 O 1.34227 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.45202 * 117.00465 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47296 * 179.97438 * 8 7 5 10 10 O 1.21289 * 120.00318 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00054 * 180.02562 * 11 9 8 13 13 H 1.07994 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99634 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00082 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99688 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47085 * 89.99954 * 16 14 12 18 18 H 1.48502 * 109.47038 * 209.99593 * 16 14 12 19 19 H 1.48499 * 109.47261 * 329.99954 * 16 14 12 20 20 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 21 21 C 1.36885 * 126.39286 * 120.00096 * 20 2 1 22 22 C 1.34665 * 106.81493 * 179.97438 * 21 20 2 23 23 N 1.34129 * 108.02445 * 0.02562 * 22 21 20 24 24 C 1.30498 * 109.25189 * 359.97438 * 23 22 21 25 25 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 26 26 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 27 27 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 29 29 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 30 30 H 1.09000 * 109.46572 * 300.00183 * 8 7 5 31 31 H 1.08998 * 109.46515 * 59.99319 * 8 7 5 32 32 H 0.97004 * 119.99626 * 359.97438 * 11 9 8 33 33 H 0.97000 * 119.99690 * 180.02562 * 15 14 12 34 34 H 1.07999 * 126.59054 * 359.73997 * 21 20 2 35 35 H 1.08008 * 125.98738 * 179.97438 * 22 21 20 36 36 H 1.08006 * 125.64605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0140 1.0836 2.3637 7 8 1.9837 -0.3895 3.6952 8 6 1.5666 0.4115 4.8322 9 6 2.0366 -0.2416 6.1063 10 8 2.6614 -1.2803 6.0607 11 7 1.7620 0.3278 7.2966 12 6 2.1901 -0.2661 8.4557 13 1 2.7470 -1.1904 8.4150 14 6 1.9073 0.3214 9.6828 15 7 1.2300 1.4464 9.7322 16 14 2.4900 -0.4882 11.2622 17 1 3.8410 0.0207 11.6101 18 1 1.5429 -0.1691 12.3606 19 1 2.5493 -1.9597 11.0715 20 7 2.0184 -0.6907 -1.1961 21 6 2.8085 -0.1554 -2.1774 22 6 3.0192 -1.1298 -3.0827 23 7 2.3748 -2.2299 -2.6660 24 6 1.7733 -1.9743 -1.5365 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 2.0003 1.4083 4.7529 31 1 0.4793 0.4881 4.8432 32 1 1.2620 1.1583 7.3330 33 1 1.0330 1.8566 10.5888 34 1 3.1868 0.8553 -2.2195 35 1 3.6039 -1.0408 -3.9865 36 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845281986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:37 Heat of formation + Delta-G solvation = -59.397057 kcal Electronic energy + Delta-G solvation = -20956.856091 eV Core-core repulsion = 17442.665704 eV Total energy + Delta-G solvation = -3514.190386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.35592 -40.61611 -38.32445 -36.80642 -35.67935 -34.07477 -31.50739 -31.36357 -29.62369 -29.14500 -27.84837 -24.75992 -23.77607 -21.67592 -21.34368 -20.19036 -19.67438 -18.24495 -18.07617 -17.00693 -16.76595 -16.49842 -15.60007 -15.47259 -15.05161 -14.63494 -14.40271 -14.07918 -14.02730 -13.85625 -13.61396 -13.34378 -12.93607 -12.68630 -12.15742 -12.09604 -11.90146 -11.69339 -11.67316 -11.18157 -10.63080 -10.54575 -10.48642 -10.34901 -10.17964 -9.91676 -9.66746 -8.74779 -8.60714 -8.14922 -6.56045 -3.98295 1.79547 2.04401 2.17693 2.81184 2.97997 3.08913 3.19932 3.25941 3.65976 3.97472 4.05179 4.26284 4.45043 4.49730 4.62314 4.69250 4.96583 4.98450 5.08503 5.09968 5.20099 5.31950 5.37581 5.44989 5.49371 5.58300 5.78437 5.96302 6.04724 6.45656 6.50684 6.92629 7.42183 7.61708 7.85954 7.87867 8.41371 9.00899 9.32219 9.81751 10.61047 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049286 B = 0.002640 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.971096 B =10604.329197 C =10927.964325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.146 3.854 3 H 0.112 0.888 4 C -0.127 4.127 5 C 0.467 3.533 6 O -0.512 6.512 7 O -0.322 6.322 8 C 0.061 3.939 9 C 0.436 3.564 10 O -0.576 6.576 11 N -0.551 5.551 12 C -0.303 4.303 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.897 5.897 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 N -0.454 5.454 21 C -0.054 4.054 22 C -0.032 4.032 23 N -0.496 5.496 24 C 0.183 3.817 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.395 0.605 33 H 0.274 0.726 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 0.694 -18.809 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.043 3.957 3 H 0.130 0.870 4 C -0.165 4.165 5 C 0.309 3.691 6 O -0.401 6.401 7 O -0.236 6.236 8 C -0.016 4.016 9 C 0.221 3.779 10 O -0.460 6.460 11 N -0.188 5.188 12 C -0.432 4.432 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.537 5.537 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.192 1.192 20 N -0.138 5.138 21 C -0.187 4.187 22 C -0.180 4.180 23 N -0.214 5.214 24 C -0.099 4.099 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.191 0.809 35 H 0.186 0.814 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.101 -0.265 -18.947 18.981 hybrid contribution -0.087 1.195 1.342 1.799 sum -1.188 0.930 -17.605 17.670 Atomic orbital electron populations 1.22335 0.92093 1.03463 1.04871 1.21190 0.96459 0.96946 0.81126 0.86973 1.21656 1.05175 1.00845 0.88827 1.23161 0.76500 0.84076 0.85353 1.90653 1.37688 1.24445 1.87342 1.86547 1.71194 1.51698 1.14121 1.22800 1.00841 0.94301 0.83688 1.19295 0.86918 0.87817 0.83914 1.90571 1.44375 1.24576 1.86498 1.41709 1.49124 1.23914 1.04090 1.19730 1.33149 1.08108 0.82259 0.87580 1.25324 0.96652 0.96027 0.99717 1.69611 1.38878 1.17808 1.27394 0.85789 0.78384 0.79597 0.80146 1.20215 1.20766 1.19238 1.45719 1.38182 1.11536 1.18315 1.22788 1.02283 1.01386 0.92241 1.22313 1.04683 0.89591 1.01430 1.70319 1.12364 1.28162 1.10566 1.24953 1.03750 0.85332 0.95864 0.88436 0.91475 0.91726 0.86548 0.86614 0.89397 0.89365 0.77150 0.91565 0.80919 0.81421 0.78071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 8.98 37.16 0.33 -1.01 16 2 C 0.15 1.18 2.70 -67.92 -0.18 0.99 16 3 H 0.11 0.89 7.90 -51.93 -0.41 0.48 16 4 C -0.13 -1.14 5.29 -27.88 -0.15 -1.28 16 5 C 0.47 6.04 7.67 36.01 0.28 6.32 16 6 O -0.51 -7.18 13.72 -18.75 -0.26 -7.44 16 7 O -0.32 -5.40 9.75 -45.90 -0.45 -5.85 16 8 C 0.06 1.08 5.94 36.00 0.21 1.29 16 9 C 0.44 10.12 7.86 -10.99 -0.09 10.03 16 10 O -0.58 -15.59 16.08 -14.11 -0.23 -15.82 16 11 N -0.55 -13.52 5.29 -10.97 -0.06 -13.58 16 12 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 13 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.90 -23.56 13.05 55.50 0.72 -22.83 16 16 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 N -0.45 -3.96 2.62 -111.45 -0.29 -4.25 16 21 C -0.05 -0.47 11.54 -16.56 -0.19 -0.66 16 22 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 23 N -0.50 -5.91 11.25 -14.66 -0.16 -6.07 16 24 C 0.18 1.76 11.65 -90.38 -1.05 0.71 16 25 H 0.10 0.92 5.96 -51.93 -0.31 0.61 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 28 H 0.12 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.40 8.13 -51.93 -0.42 0.97 16 31 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 32 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 34 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.20 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -33.17 321.29 -6.54 -39.70 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.34 Total: 7.92 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.29 Total: 8.09 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.21 Total: -46.74 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.93 Total: -29.11 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.17 -6.54 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845281986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.695 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds