Wall clock time and date at job start Tue Mar 31 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.20827 * 120.00517 * 359.97438 * 5 4 2 7 7 O 1.34227 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.45202 * 117.00465 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47296 * 179.97438 * 8 7 5 10 10 O 1.21289 * 120.00318 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00054 * 180.02562 * 11 9 8 13 13 H 1.07994 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99634 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00082 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99688 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47085 * 89.99954 * 16 14 12 18 18 H 1.48502 * 109.47038 * 209.99593 * 16 14 12 19 19 H 1.48499 * 109.47261 * 329.99954 * 16 14 12 20 20 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 21 21 C 1.36885 * 126.39286 * 120.00096 * 20 2 1 22 22 C 1.34665 * 106.81493 * 179.97438 * 21 20 2 23 23 N 1.34129 * 108.02445 * 0.02562 * 22 21 20 24 24 C 1.30498 * 109.25189 * 359.97438 * 23 22 21 25 25 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 26 26 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 27 27 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 29 29 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 30 30 H 1.09000 * 109.46572 * 300.00183 * 8 7 5 31 31 H 1.08998 * 109.46515 * 59.99319 * 8 7 5 32 32 H 0.97004 * 119.99626 * 359.97438 * 11 9 8 33 33 H 0.97000 * 119.99690 * 180.02562 * 15 14 12 34 34 H 1.07999 * 126.59054 * 359.73997 * 21 20 2 35 35 H 1.08008 * 125.98738 * 179.97438 * 22 21 20 36 36 H 1.08006 * 125.64605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0140 1.0836 2.3637 7 8 1.9837 -0.3895 3.6952 8 6 1.5666 0.4115 4.8322 9 6 2.0366 -0.2416 6.1063 10 8 2.6614 -1.2803 6.0607 11 7 1.7620 0.3278 7.2966 12 6 2.1901 -0.2661 8.4557 13 1 2.7470 -1.1904 8.4150 14 6 1.9073 0.3214 9.6828 15 7 1.2300 1.4464 9.7322 16 14 2.4900 -0.4882 11.2622 17 1 3.8410 0.0207 11.6101 18 1 1.5429 -0.1691 12.3606 19 1 2.5493 -1.9597 11.0715 20 7 2.0184 -0.6907 -1.1961 21 6 2.8085 -0.1554 -2.1774 22 6 3.0192 -1.1298 -3.0827 23 7 2.3748 -2.2299 -2.6660 24 6 1.7733 -1.9743 -1.5365 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 2.0003 1.4083 4.7529 31 1 0.4793 0.4881 4.8432 32 1 1.2620 1.1583 7.3330 33 1 1.0330 1.8566 10.5888 34 1 3.1868 0.8553 -2.2195 35 1 3.6039 -1.0408 -3.9865 36 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845281986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:37 Heat of formation + Delta-G solvation = -79.544832 kcal Electronic energy + Delta-G solvation = -20957.729764 eV Core-core repulsion = 17442.665704 eV Total energy + Delta-G solvation = -3515.064059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.05029 -41.74521 -40.09429 -37.95650 -36.56373 -36.04322 -33.43199 -32.18240 -30.55526 -30.05106 -28.96202 -26.57503 -24.58373 -22.52076 -22.17307 -21.44490 -20.95463 -20.08964 -19.11091 -18.03529 -17.95642 -17.75583 -17.10765 -16.45984 -16.23562 -16.04707 -15.77759 -15.40593 -14.91562 -14.71446 -14.57422 -14.25562 -14.16621 -13.84888 -13.58036 -13.50663 -13.01396 -12.90007 -12.61055 -12.48705 -12.33327 -12.12991 -11.86205 -11.64371 -11.58451 -10.91671 -10.65357 -10.51995 -10.12856 -9.42761 -8.53682 -6.04131 1.02407 1.05914 1.27936 1.35322 1.43355 1.55752 1.86431 1.93824 2.25580 2.30027 3.04015 3.12215 3.28080 3.56797 3.68125 3.89378 3.99292 4.01470 4.12397 4.15752 4.22222 4.32927 4.45441 4.60716 4.70391 4.76287 4.85559 5.12528 5.31432 5.36143 5.41403 5.84852 5.88078 6.25977 6.43879 6.58020 7.02181 7.16532 7.39108 7.92720 8.63208 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049286 B = 0.002640 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.971096 B =10604.329197 C =10927.964325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 H 0.116 0.884 4 C -0.119 4.119 5 C 0.470 3.530 6 O -0.521 6.521 7 O -0.345 6.345 8 C 0.073 3.927 9 C 0.434 3.566 10 O -0.620 6.620 11 N -0.558 5.558 12 C -0.338 4.338 13 H 0.084 0.916 14 C -0.008 4.008 15 N -0.915 5.915 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.271 1.271 20 N -0.452 5.452 21 C -0.051 4.051 22 C -0.056 4.056 23 N -0.536 5.536 24 C 0.177 3.823 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.400 0.600 33 H 0.281 0.719 34 H 0.200 0.800 35 H 0.181 0.819 36 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 1.218 -19.136 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 H 0.134 0.866 4 C -0.157 4.157 5 C 0.313 3.687 6 O -0.410 6.410 7 O -0.260 6.260 8 C -0.004 4.004 9 C 0.221 3.779 10 O -0.507 6.507 11 N -0.196 5.196 12 C -0.467 4.467 13 H 0.102 0.898 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.194 1.194 19 H -0.196 1.196 20 N -0.135 5.135 21 C -0.183 4.183 22 C -0.203 4.203 23 N -0.255 5.255 24 C -0.105 4.105 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.217 0.783 35 H 0.198 0.802 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.343 0.296 -19.298 19.347 hybrid contribution -0.029 1.049 1.353 1.712 sum -1.371 1.345 -17.945 18.048 Atomic orbital electron populations 1.22280 0.91857 1.04030 1.04225 1.21129 0.96511 0.96847 0.80411 0.86571 1.21729 1.05776 1.01135 0.87012 1.23791 0.75856 0.84167 0.84857 1.90655 1.38129 1.25048 1.87210 1.86547 1.72043 1.52293 1.15076 1.22522 1.01935 0.94221 0.81720 1.20193 0.85375 0.87074 0.85252 1.90535 1.46075 1.26578 1.87463 1.41752 1.49397 1.24152 1.04264 1.19702 1.34738 1.08306 0.83949 0.89840 1.26105 0.96244 0.96400 1.02156 1.69664 1.38926 1.18378 1.28503 0.84875 0.78320 0.78365 0.76487 1.19488 1.19438 1.19574 1.45742 1.38071 1.11356 1.18351 1.23221 1.01386 1.02200 0.91513 1.22679 1.05343 0.89687 1.02556 1.70289 1.13726 1.29501 1.11943 1.25403 1.03546 0.85975 0.95583 0.89873 0.91202 0.90648 0.84784 0.85811 0.87352 0.87196 0.76513 0.90955 0.78348 0.80166 0.75931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.98 71.98 0.65 -1.61 16 2 C 0.15 2.11 2.70 45.00 0.12 2.23 16 3 H 0.12 1.54 7.90 -2.39 -0.02 1.53 16 4 C -0.12 -1.85 5.29 29.85 0.16 -1.69 16 5 C 0.47 11.25 7.67 71.24 0.55 11.80 16 6 O -0.52 -13.56 13.72 21.96 0.30 -13.26 16 7 O -0.34 -11.13 9.75 -45.04 -0.44 -11.57 16 8 C 0.07 2.49 5.94 71.23 0.42 2.92 16 9 C 0.43 20.27 7.86 87.66 0.69 20.96 16 10 O -0.62 -34.19 16.08 15.74 0.25 -33.93 16 11 N -0.56 -27.68 5.29 -306.99 -1.62 -29.30 16 12 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 15 N -0.91 -47.54 13.05 21.66 0.28 -47.26 16 16 Si 1.00 41.25 29.55 68.60 2.03 43.28 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 20 N -0.45 -6.89 2.62 -506.53 -1.33 -8.21 16 21 C -0.05 -0.77 11.54 83.08 0.96 0.19 16 22 C -0.06 -1.05 11.87 83.52 0.99 -0.06 16 23 N -0.54 -12.26 11.25 -200.31 -2.25 -14.52 16 24 C 0.18 3.10 11.65 180.26 2.10 5.20 16 25 H 0.08 1.42 5.96 -2.39 -0.01 1.40 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.85 7.95 -2.39 -0.02 0.83 16 28 H 0.13 1.66 8.08 -2.39 -0.02 1.64 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 3.26 8.13 -2.39 -0.02 3.24 16 31 H 0.11 3.27 8.13 -2.39 -0.02 3.25 16 32 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 33 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.20 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 36 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -71.55 321.29 5.52 -66.03 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.38 Total: 26.49 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 7.92 Total: 22.25 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.92 Total: -99.28 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: 0.11 Total: -58.77 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -71.55 5.52 -66.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845281986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.511 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds