Wall clock time and date at job start Tue Mar 31 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.52998 * 109.47169 * 119.99329 * 2 1 3 5 5 C 1.50697 * 109.47505 * 295.00341 * 4 2 1 6 6 O 1.20821 * 120.00202 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99792 * 179.97438 * 5 4 2 8 8 C 1.45202 * 116.99480 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.46692 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00543 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00200 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00417 * 180.02562 * 11 9 8 13 13 H 1.07991 * 119.99856 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00014 * 180.02562 * 12 11 9 15 15 N 1.31417 * 120.00130 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00049 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47112 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47321 * 119.99927 * 16 14 12 19 19 H 1.48501 * 109.47408 * 240.00021 * 16 14 12 20 20 C 1.50697 * 109.47600 * 239.99946 * 2 1 3 21 21 C 1.34515 * 125.79159 * 119.99321 * 20 2 1 22 22 C 1.41385 * 106.84000 * 180.02562 * 21 20 2 23 23 C 1.34507 * 106.84104 * 0.02562 * 22 21 20 24 24 O 1.34300 * 108.42410 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.47255 * 60.00390 * 1 2 3 26 26 H 1.09007 * 109.46496 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47143 * 300.00039 * 1 2 3 28 28 H 1.09003 * 109.46867 * 55.01102 * 4 2 1 29 29 H 1.09002 * 109.47002 * 175.00309 * 4 2 1 30 30 H 1.08990 * 109.47356 * 299.99991 * 8 7 5 31 31 H 1.09000 * 109.47067 * 60.00693 * 8 7 5 32 32 H 0.97010 * 119.99332 * 359.97438 * 11 9 8 33 33 H 0.96996 * 120.00227 * 179.97438 * 15 14 12 34 34 H 1.08001 * 126.57671 * 0.29417 * 21 20 2 35 35 H 1.08003 * 126.57418 * 180.02562 * 22 21 20 36 36 H 1.08001 * 125.78847 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0132 1.0832 2.3638 7 8 1.9831 -0.3899 3.6952 8 6 1.5650 0.4106 4.8322 9 6 2.0343 -0.2430 6.1064 10 8 2.6600 -1.2811 6.0608 11 7 1.7587 0.3259 7.2968 12 6 2.1861 -0.2684 8.4559 13 1 2.7432 -1.1927 8.4153 14 6 1.9015 0.3179 9.6831 15 7 1.2232 1.4423 9.7326 16 14 2.4832 -0.4923 11.2626 17 1 3.2207 -1.7394 10.9367 18 1 3.3817 0.4368 11.9937 19 1 1.3102 -0.8181 12.1129 20 6 2.0324 -0.7104 -1.2304 21 6 2.8090 -0.1719 -2.1877 22 6 3.0379 -1.1848 -3.1472 23 6 2.3872 -2.2814 -2.7192 24 8 1.7801 -1.9883 -1.5576 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6055 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 1.9986 1.4075 4.7538 31 1 0.4777 0.4870 4.8426 32 1 1.2586 1.1564 7.3332 33 1 1.0242 1.8514 10.5893 34 1 3.1886 0.8388 -2.2156 35 1 3.6231 -1.0951 -4.0506 36 1 2.3584 -3.2359 -3.2236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859813982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:46 Heat of formation + Delta-G solvation = -115.438788 kcal Electronic energy + Delta-G solvation = -20887.416025 eV Core-core repulsion = 17338.502736 eV Total energy + Delta-G solvation = -3548.913289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.81521 -40.43645 -38.22240 -36.55202 -35.17051 -34.00412 -33.15104 -31.38844 -29.67746 -28.65558 -27.61846 -24.65779 -23.39329 -22.00163 -20.98043 -19.95134 -19.57694 -18.09472 -17.88986 -17.13666 -16.57856 -16.38254 -16.08351 -15.58976 -14.90155 -14.70511 -14.34614 -14.05346 -13.82330 -13.38640 -13.10585 -13.04246 -12.85928 -12.68267 -12.26581 -11.96154 -11.66949 -11.62598 -11.52725 -11.24482 -11.15103 -10.42431 -10.39241 -10.33612 -10.25381 -10.14490 -9.62012 -8.70450 -8.52283 -8.08636 -6.50412 -3.92378 1.49310 2.28541 2.37032 2.66069 2.84519 3.11574 3.23777 3.31401 3.73466 4.10219 4.34010 4.43976 4.67742 4.74187 4.80034 4.90530 5.07261 5.14653 5.19121 5.39565 5.42642 5.52867 5.55818 5.64175 5.69466 5.73536 5.85758 5.88068 6.05037 6.13114 6.26024 6.65642 6.92049 7.47770 7.83017 7.96081 8.48272 9.06987 9.39109 9.89050 10.66923 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.048468 B = 0.002623 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.558149 B =10672.526845 C =11006.125840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.004 3.996 3 H 0.111 0.889 4 C -0.112 4.112 5 C 0.461 3.539 6 O -0.513 6.513 7 O -0.325 6.325 8 C 0.060 3.940 9 C 0.438 3.562 10 O -0.576 6.576 11 N -0.553 5.553 12 C -0.301 4.301 13 H 0.107 0.893 14 C 0.024 3.976 15 N -0.897 5.897 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.002 4.002 21 C -0.209 4.209 22 C -0.215 4.215 23 C -0.043 4.043 24 O -0.172 6.172 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.395 0.605 33 H 0.273 0.727 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -1.798 -22.147 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 H 0.129 0.871 4 C -0.149 4.149 5 C 0.305 3.695 6 O -0.402 6.402 7 O -0.239 6.239 8 C -0.017 4.017 9 C 0.223 3.777 10 O -0.460 6.460 11 N -0.191 5.191 12 C -0.431 4.431 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.052 4.052 21 C -0.228 4.228 22 C -0.234 4.234 23 C -0.111 4.111 24 O -0.068 6.068 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.113 -2.279 -21.820 21.939 hybrid contribution 0.060 0.431 0.599 0.740 sum -0.053 -1.848 -21.221 21.301 Atomic orbital electron populations 1.22021 0.92812 1.02713 1.03854 1.19585 0.97438 0.98100 0.86309 0.87125 1.21446 1.04535 1.00510 0.88434 1.23550 0.76439 0.84201 0.85338 1.90624 1.37664 1.24618 1.87308 1.86559 1.71380 1.51742 1.14249 1.22750 1.00753 0.94344 0.83859 1.19344 0.86702 0.87729 0.83962 1.90566 1.44246 1.24614 1.86558 1.41721 1.49283 1.23970 1.04103 1.19774 1.32944 1.08049 0.82284 0.87568 1.25317 0.96768 0.96055 0.99680 1.69622 1.39065 1.17922 1.27190 0.85740 0.78416 0.79221 0.80622 1.19084 1.20622 1.20616 1.22332 1.01409 0.82679 0.98782 1.21632 1.03876 1.01395 0.95909 1.21831 1.05553 0.93609 1.02380 1.24043 0.99160 1.00909 0.86987 1.84018 1.59397 1.28035 1.35330 0.92098 0.92314 0.89679 0.86986 0.87111 0.89495 0.89503 0.77159 0.91680 0.83414 0.83516 0.78159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.92 37.16 0.33 -1.28 16 2 C 0.00 0.04 2.44 -91.77 -0.22 -0.18 16 3 H 0.11 1.08 7.92 -51.93 -0.41 0.67 16 4 C -0.11 -1.24 5.27 -27.89 -0.15 -1.39 16 5 C 0.46 6.85 7.68 36.00 0.28 7.13 16 6 O -0.51 -8.17 13.72 -18.75 -0.26 -8.43 16 7 O -0.33 -5.95 9.76 -45.91 -0.45 -6.40 16 8 C 0.06 1.14 5.94 36.00 0.21 1.35 16 9 C 0.44 10.56 7.86 -10.98 -0.09 10.47 16 10 O -0.58 -16.07 16.08 -14.11 -0.23 -16.30 16 11 N -0.55 -13.99 5.29 -10.97 -0.06 -14.05 16 12 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 13 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 14 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 15 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 16 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.00 -0.02 5.83 -35.63 -0.21 -0.23 16 21 C -0.21 -1.98 10.78 -39.70 -0.43 -2.41 16 22 C -0.21 -1.81 10.91 -39.70 -0.43 -2.25 16 23 C -0.04 -0.36 12.09 29.41 0.36 0.00 16 24 O -0.17 -1.80 10.65 5.71 0.06 -1.74 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.00 5.96 -51.93 -0.31 0.69 16 28 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 31 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 32 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 36 H 0.20 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -32.74 322.55 -5.31 -38.05 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.36 Total: 8.36 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.59 Total: 3.30 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.67 Total: -37.38 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.87 Total: -32.87 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.74 -5.31 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859813982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.385 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds