Wall clock time and date at job start Tue Mar 31 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86806 * 119.99610 * 2 1 4 4 H 1.48501 * 109.46689 * 269.99579 * 3 2 1 5 5 H 1.48492 * 109.47350 * 29.99989 * 3 2 1 6 6 H 1.48502 * 109.46809 * 150.00122 * 3 2 1 7 7 C 1.38786 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00011 * 0.02562 * 7 2 1 9 9 O 1.34846 * 120.00202 * 180.02562 * 7 2 1 10 10 C 1.34896 * 117.00445 * 180.02562 * 9 7 2 11 11 O 1.21660 * 119.99617 * 359.97438 * 10 9 7 12 12 C 1.46402 * 120.00289 * 179.97438 * 10 9 7 13 13 C 1.36710 * 125.99717 * 179.97438 * 12 10 9 14 14 C 1.40290 * 106.69876 * 180.02562 * 13 12 10 15 15 C 1.35189 * 107.13356 * 0.02562 * 14 13 12 16 16 C 1.50697 * 125.61017 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.47040 * 89.99627 * 16 15 14 18 18 C 1.47010 * 111.00424 * 293.64133 * 17 16 15 19 19 C 1.53092 * 109.26081 * 177.60509 * 18 17 16 20 20 O 1.43021 * 109.25673 * 56.84810 * 19 18 17 21 21 C 1.43016 * 113.73662 * 301.32892 * 20 19 18 22 22 C 1.47016 * 111.00159 * 170.00213 * 17 16 15 23 23 O 1.33934 * 108.78817 * 359.97438 * 15 14 13 24 24 H 0.97005 * 119.99764 * 0.02562 * 1 2 3 25 25 H 1.08002 * 126.65425 * 0.02920 * 13 12 10 26 26 H 1.07998 * 126.43361 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.47632 * 209.99654 * 16 15 14 28 28 H 1.09004 * 109.47335 * 330.00464 * 16 15 14 29 29 H 1.09006 * 109.50432 * 297.53975 * 18 17 16 30 30 H 1.09001 * 109.50781 * 57.66698 * 18 17 16 31 31 H 1.09001 * 109.50853 * 296.91142 * 19 18 17 32 32 H 1.09000 * 109.54301 * 176.80047 * 19 18 17 33 33 H 1.08997 * 109.50728 * 298.73405 * 21 20 19 34 34 H 1.09000 * 109.53749 * 178.62705 * 21 20 19 35 35 H 1.09000 * 109.50587 * 302.33356 * 22 17 16 36 36 H 1.08999 * 109.50680 * 62.45573 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4403 0.7000 7 6 2.0083 -1.2019 0.0005 8 1 1.4683 -2.1373 0.0005 9 8 3.3568 -1.2019 0.0011 10 6 3.9692 -2.4038 0.0010 11 8 3.3066 -3.4241 0.0010 12 6 5.4313 -2.4804 0.0010 13 6 6.1758 -3.6270 0.0015 14 6 7.5223 -3.2333 0.0019 15 6 7.5420 -1.8815 0.0022 16 6 8.7798 -1.0220 0.0021 17 7 9.1817 -0.7424 -1.3829 18 6 9.6168 -1.9708 -2.0635 19 6 9.9687 -1.6450 -3.5174 20 8 10.9731 -0.6271 -3.5429 21 6 10.5825 0.5836 -2.8894 22 6 10.2368 0.2803 -1.4292 23 8 6.2804 -1.4317 0.0015 24 1 -0.4850 0.8401 -0.0004 25 1 5.8002 -4.6396 0.0015 26 1 8.3818 -3.8872 0.0019 27 1 8.5708 -0.0838 0.5162 28 1 9.5861 -1.5459 0.5156 29 1 10.4940 -2.3754 -1.5586 30 1 8.8114 -2.7048 -2.0397 31 1 9.0783 -1.2908 -4.0368 32 1 10.3458 -2.5408 -4.0108 33 1 9.7100 1.0026 -3.3906 34 1 11.4033 1.2998 -2.9279 35 1 9.8840 1.1895 -0.9423 36 1 11.1239 -0.0883 -0.9141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884950001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:46 Heat of formation + Delta-G solvation = -91.585200 kcal Electronic energy + Delta-G solvation = -21767.005470 eV Core-core repulsion = 18219.126550 eV Total energy + Delta-G solvation = -3547.878920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.44479 -39.77126 -39.04263 -36.24202 -35.53116 -32.88554 -32.42559 -31.51609 -30.96011 -28.19169 -25.97286 -24.59100 -24.30427 -22.13795 -21.19847 -20.68051 -19.87475 -18.10935 -17.69729 -17.04552 -16.50491 -16.05607 -15.77610 -15.48723 -15.26306 -15.10299 -14.58682 -14.34921 -14.04067 -13.92124 -13.24996 -13.00344 -12.74132 -12.70425 -12.42079 -12.19614 -12.05395 -11.69764 -11.40734 -11.38200 -10.86858 -10.60810 -10.47199 -10.00498 -9.81205 -9.80278 -9.55112 -8.80714 -8.77521 -8.31683 -6.49487 -4.20901 1.32270 2.41638 2.86468 3.18077 3.22149 3.37580 3.49839 3.64104 3.75093 4.01973 4.19584 4.55755 4.59581 4.69070 4.78707 4.85971 4.99925 5.03544 5.05564 5.08875 5.22687 5.25449 5.37363 5.47634 5.55906 5.66344 5.67856 5.90168 5.97308 6.34200 6.48052 6.57699 6.59523 6.84554 7.22090 7.55204 7.91819 8.45222 8.86912 9.52684 10.57327 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.004395 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.759217 B = 6369.773171 C = 7237.416315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.376 4.376 8 H 0.115 0.885 9 O -0.231 6.231 10 C 0.478 3.522 11 O -0.518 6.518 12 C -0.007 4.007 13 C -0.145 4.145 14 C -0.210 4.210 15 C 0.005 3.995 16 C 0.134 3.866 17 N -0.535 5.535 18 C 0.012 3.988 19 C 0.063 3.937 20 O -0.387 6.387 21 C 0.063 3.937 22 C 0.019 3.981 23 O -0.142 6.142 24 H 0.283 0.717 25 H 0.159 0.841 26 H 0.150 0.850 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.112 0.250 -2.653 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.136 4.136 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.451 4.451 8 H 0.132 0.868 9 O -0.139 6.139 10 C 0.325 3.675 11 O -0.415 6.415 12 C -0.059 4.059 13 C -0.164 4.164 14 C -0.230 4.230 15 C -0.048 4.048 16 C 0.007 3.993 17 N -0.261 5.261 18 C -0.116 4.116 19 C -0.014 4.014 20 O -0.306 6.306 21 C -0.014 4.014 22 C -0.109 4.109 23 O -0.037 6.037 24 H 0.093 0.907 25 H 0.177 0.823 26 H 0.168 0.832 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.402 0.628 -2.988 22.609 hybrid contribution 0.557 0.210 0.622 0.861 sum 22.959 0.839 -2.366 23.096 Atomic orbital electron populations 1.69598 1.05765 1.28859 1.45693 1.24581 0.95040 0.98912 0.95112 0.86215 0.80497 0.81104 0.79324 1.19536 1.20467 1.18034 1.20775 0.75817 0.97315 1.51209 0.86791 1.83640 1.24219 1.30510 1.75505 1.18635 0.84219 0.83319 0.81313 1.90785 1.63571 1.35884 1.51278 1.21394 0.88825 0.85345 1.10343 1.21758 0.91866 0.98931 1.03885 1.21445 0.97571 0.93953 1.10052 1.22296 0.84221 0.93351 1.04939 1.20457 0.89974 0.99188 0.89644 1.62103 1.38788 1.09945 1.15264 1.22924 1.00318 0.92655 0.95683 1.22682 0.92060 0.91574 0.95046 1.87972 1.41125 1.24070 1.77428 1.22667 1.00896 0.86987 0.90839 1.22806 0.93128 0.96323 0.98609 1.84151 1.14920 1.35217 1.69380 0.90668 0.82305 0.83190 0.88417 0.91147 0.93708 0.88720 0.91956 0.88275 0.91960 0.88305 0.89176 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.20 13.96 55.49 0.77 -24.42 16 2 C 0.07 1.98 5.50 -17.52 -0.10 1.89 16 3 Si 0.90 21.68 28.62 -169.99 -4.86 16.81 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.38 -11.31 10.11 30.93 0.31 -10.99 16 8 H 0.11 3.70 7.09 -52.48 -0.37 3.33 16 9 O -0.23 -6.43 8.58 -23.53 -0.20 -6.64 16 10 C 0.48 12.15 7.86 34.02 0.27 12.41 16 11 O -0.52 -14.17 16.12 -19.39 -0.31 -14.48 16 12 C -0.01 -0.15 7.18 -36.85 -0.26 -0.42 16 13 C -0.14 -2.42 10.62 -39.36 -0.42 -2.84 16 14 C -0.21 -2.82 9.30 -39.90 -0.37 -3.19 16 15 C 0.01 0.07 6.23 -35.39 -0.22 -0.15 16 16 C 0.13 1.44 5.49 -4.97 -0.03 1.41 16 17 N -0.54 -5.79 4.72 -235.75 -1.11 -6.90 16 18 C 0.01 0.12 5.39 -3.72 -0.02 0.10 16 19 C 0.06 0.60 7.01 37.20 0.26 0.86 16 20 O -0.39 -4.07 10.83 -35.23 -0.38 -4.45 16 21 C 0.06 0.54 7.01 37.20 0.26 0.80 16 22 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 23 O -0.14 -2.73 10.67 4.66 0.05 -2.68 16 24 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 26 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 27 H 0.10 0.99 8.04 -51.93 -0.42 0.57 16 28 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.99 6.19 -51.93 -0.32 0.67 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -33.47 312.96 -6.14 -39.61 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.47 Total: -1.59 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.34 Total: 0.02 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.34 Total: -31.32 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.85 Total: -28.25 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.47 -6.14 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884950001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.977 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds