Wall clock time and date at job start Tue Mar 31 2020 02:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99496 * 2 1 4 4 H 1.48503 * 109.46947 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47113 * 299.99748 * 3 2 1 6 6 H 1.48501 * 109.47223 * 60.00350 * 3 2 1 7 7 C 1.38811 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99586 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.47869 * 126.94728 * 359.95876 * 9 7 2 11 11 C 1.56019 * 105.10550 * 182.03683 * 10 9 7 12 12 H 1.08998 * 116.24579 * 159.67892 * 11 10 9 13 13 C 1.57084 * 99.60544 * 32.80701 * 11 10 9 14 14 C 1.49296 * 126.94245 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15181 * 15.80331 * 14 9 7 16 16 C 1.56020 * 104.08857 * 246.65962 * 14 9 7 17 17 N 1.47870 * 105.10881 * 288.76568 * 16 14 9 18 18 C 1.34765 * 126.94601 * 181.97955 * 17 16 14 19 19 O 1.21282 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00292 * 0.02791 * 18 17 16 21 21 H 1.09000 * 110.49746 * 40.70105 * 20 18 17 22 22 C 1.54082 * 110.56375 * 277.95926 * 20 18 17 23 23 O 1.45708 * 104.00857 * 241.42331 * 22 20 18 24 24 C 1.33767 * 109.47279 * 0.02562 * 23 22 20 25 25 O 1.21515 * 123.07099 * 180.02562 * 24 23 22 26 26 N 1.34321 * 113.90715 * 359.91420 * 24 23 22 27 27 H 0.96997 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.31728 * 300.94313 * 10 9 7 29 29 H 1.09001 * 110.31344 * 63.13075 * 10 9 7 30 30 H 1.09004 * 112.36733 * 191.71373 * 13 11 10 31 31 H 1.08995 * 112.36895 * 64.27368 * 13 11 10 32 32 H 1.08999 * 110.31874 * 47.67600 * 16 14 9 33 33 H 1.09000 * 110.31203 * 169.85667 * 16 14 9 34 34 H 1.09000 * 110.52803 * 0.05545 * 22 20 18 35 35 H 1.09005 * 110.52275 * 122.79446 * 22 20 18 36 36 H 0.97003 * 125.73609 * 180.11837 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1421 -2.5669 0.0008 11 6 -0.3635 -4.1104 0.0537 12 1 -1.3405 -4.4455 0.4018 13 6 0.8851 -4.5250 0.9119 14 6 1.9105 -3.7616 -0.0005 15 1 2.9649 -3.8349 0.2659 16 6 1.5076 -4.3459 -1.3900 17 7 0.0509 -4.5839 -1.3003 18 6 -0.7422 -5.1194 -2.2491 19 8 -1.9290 -5.2576 -2.0405 20 6 -0.1547 -5.5467 -3.5695 21 1 0.8086 -6.0339 -3.4188 22 6 -0.0080 -4.3376 -4.5133 23 8 -0.8589 -4.6707 -5.6482 24 6 -1.4273 -5.8644 -5.4442 25 8 -2.1864 -6.3819 -6.2395 26 7 -1.0810 -6.4406 -4.2813 27 1 -0.4850 0.8400 0.0004 28 1 -0.5805 -2.0915 0.8783 29 1 -0.5746 -2.1535 -0.9103 30 1 1.0503 -5.6025 0.9102 31 1 0.8472 -4.1189 1.9226 32 1 1.7258 -3.6277 -2.1803 33 1 2.0336 -5.2828 -1.5734 34 1 -0.3593 -3.4279 -4.0264 35 1 1.0282 -4.2255 -4.8325 36 1 -1.3895 -7.3031 -3.9624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032381842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:35 Heat of formation + Delta-G solvation = -35.740915 kcal Electronic energy + Delta-G solvation = -22872.296843 eV Core-core repulsion = 19359.132264 eV Total energy + Delta-G solvation = -3513.164579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.82295 -40.14201 -38.11726 -37.11577 -34.69923 -33.84860 -31.90856 -30.02705 -29.00456 -28.62088 -25.46643 -24.89904 -23.40633 -22.46561 -20.95650 -20.08219 -18.85290 -18.23553 -17.95074 -17.06317 -16.64365 -16.27353 -15.77760 -15.00174 -14.87544 -14.53706 -14.31055 -14.08577 -13.77649 -13.48025 -13.32682 -12.48905 -12.40790 -12.09800 -11.84439 -11.48610 -11.18449 -11.03137 -10.93788 -10.92458 -10.80323 -10.75546 -10.42116 -10.28635 -10.16127 -9.77717 -9.29853 -8.83788 -8.29023 -7.08104 -5.89747 -3.25277 2.40838 2.51192 2.67616 2.98740 3.29406 3.34614 3.38227 3.49435 3.97173 4.27781 4.30393 4.50007 4.84775 4.95253 4.98807 5.09248 5.19467 5.31471 5.40041 5.45094 5.59009 5.69679 5.92863 6.05549 6.21720 6.25302 6.41590 6.47328 6.61754 7.09604 7.27883 7.30466 7.58198 7.75132 7.95622 7.96434 8.19375 8.96892 9.58056 10.25137 11.22354 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.005124 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.878434 B = 5463.084757 C = 6078.399008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.003 4.003 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.098 3.902 12 H 0.115 0.885 13 C -0.150 4.150 14 C 0.142 3.858 15 H 0.109 0.891 16 C 0.075 3.925 17 N -0.600 5.600 18 C 0.515 3.485 19 O -0.535 6.535 20 C 0.081 3.919 21 H 0.123 0.877 22 C 0.056 3.944 23 O -0.322 6.322 24 C 0.652 3.348 25 O -0.524 6.524 26 N -0.711 5.711 27 H 0.255 0.745 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.422 -11.210 -2.173 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.004 4.004 12 H 0.133 0.867 13 C -0.190 4.190 14 C 0.033 3.967 15 H 0.127 0.873 16 C -0.050 4.050 17 N -0.333 5.333 18 C 0.300 3.700 19 O -0.412 6.412 20 C -0.029 4.029 21 H 0.140 0.860 22 C -0.019 4.019 23 O -0.232 6.232 24 C 0.405 3.595 25 O -0.408 6.408 26 N -0.383 5.383 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 4.317 -10.955 -2.831 12.110 hybrid contribution 0.387 0.602 0.345 0.795 sum 4.705 -10.352 -2.486 11.640 Atomic orbital electron populations 1.69907 1.05003 1.25451 1.56111 1.24826 0.95668 0.97807 1.01728 0.86053 0.78696 0.83628 0.77363 1.20402 1.21689 1.21666 1.19083 0.90454 0.81943 1.44859 0.89982 1.45265 1.01250 0.99312 1.86268 1.21951 0.84810 0.86924 1.01549 1.24441 0.98005 0.97865 0.80084 0.86681 1.24153 0.96428 0.98999 0.99381 1.23168 0.96730 0.86323 0.90468 0.87306 1.23474 0.79446 0.99178 1.02922 1.49261 1.09638 1.59101 1.15351 1.19989 0.86549 0.78843 0.84586 1.90743 1.14889 1.55811 1.79752 1.22264 0.95347 0.92782 0.92518 0.85968 1.24276 0.96745 0.97626 0.83275 1.87292 1.59211 1.34313 1.42400 1.18508 0.79472 0.79589 0.81959 1.91066 1.36892 1.64173 1.48710 1.45710 1.50221 1.22862 1.19551 0.93470 0.92409 0.93370 0.91537 0.89547 0.90666 0.92381 0.86705 0.86179 0.71797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.30 10.56 55.49 0.59 -24.71 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 20.54 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -5.75 10.37 -15.06 -0.16 -5.91 16 8 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.60 -12.81 3.02 -156.35 -0.47 -13.28 16 10 C 0.17 3.74 4.76 -1.68 -0.01 3.74 16 11 C 0.10 1.66 5.24 -62.54 -0.33 1.33 16 12 H 0.12 1.94 8.05 -51.93 -0.42 1.52 16 13 C -0.15 -2.17 6.81 -22.32 -0.15 -2.32 16 14 C 0.14 2.22 5.53 -62.56 -0.35 1.87 16 15 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 16 C 0.08 0.99 5.83 -1.67 -0.01 0.98 16 17 N -0.60 -9.04 2.95 -156.76 -0.46 -9.51 16 18 C 0.52 7.81 7.01 -10.99 -0.08 7.74 16 19 O -0.53 -10.24 16.92 5.56 0.09 -10.14 16 20 C 0.08 0.91 3.59 -68.19 -0.25 0.66 16 21 H 0.12 0.93 7.70 -51.93 -0.40 0.53 16 22 C 0.06 0.64 7.87 37.72 0.30 0.93 16 23 O -0.32 -4.75 11.09 -37.82 -0.42 -5.16 16 24 C 0.65 10.16 9.16 53.85 0.49 10.65 16 25 O -0.52 -9.90 18.04 -19.12 -0.34 -10.24 16 26 N -0.71 -8.78 5.66 -59.27 -0.34 -9.12 16 27 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.06 1.42 7.46 -51.93 -0.39 1.03 16 29 H 0.05 1.21 7.68 -51.93 -0.40 0.81 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.56 7.99 -51.93 -0.41 0.14 16 34 H 0.11 1.48 7.72 -51.93 -0.40 1.08 16 35 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.44 4.65 8.96 -40.82 -0.37 4.28 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -32.92 303.20 -6.88 -39.80 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.44 Total: 2.79 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: -0.63 Total: 19.50 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.68 Total: -56.62 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.67 Total: -25.55 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.92 -6.88 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032381842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.058 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds