Wall clock time and date at job start Tue Mar 31 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00594 * 2 1 4 4 O 1.21610 * 120.00259 * 176.11259 * 3 2 1 5 5 C 1.47428 * 119.99818 * 356.10675 * 3 2 1 6 6 C 1.36086 * 126.44932 * 185.86028 * 5 3 2 7 7 O 1.34254 * 106.94754 * 179.90600 * 6 5 3 8 8 C 1.34045 * 108.22866 * 0.36507 * 7 6 5 9 9 N 1.29931 * 109.24265 * 359.77298 * 8 7 6 10 10 C 1.46509 * 119.99684 * 179.97438 * 2 1 3 11 11 H 1.08995 * 110.88561 * 183.87905 * 10 2 1 12 12 C 1.54916 * 111.00384 * 307.80568 * 10 2 1 13 13 N 1.47416 * 104.82911 * 155.08581 * 12 10 2 14 14 C 1.36945 * 125.64668 * 155.90770 * 13 12 10 15 15 H 1.08000 * 119.99431 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99907 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47007 * 60.00447 * 18 16 14 20 20 H 1.48501 * 109.47118 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47384 * 300.00137 * 18 16 14 22 22 C 1.47319 * 108.74010 * 335.70871 * 13 12 10 23 23 C 1.54324 * 107.11902 * 1.30826 * 22 13 12 24 24 H 1.08996 * 110.71973 * 263.51941 * 23 22 13 25 25 O 1.42904 * 110.72146 * 140.42221 * 23 22 13 26 26 H 1.09003 * 109.47154 * 275.69185 * 1 2 3 27 27 H 1.08999 * 109.46693 * 35.68842 * 1 2 3 28 28 H 1.09000 * 109.47208 * 155.68842 * 1 2 3 29 29 H 1.08002 * 126.52276 * 0.04753 * 6 5 3 30 30 H 1.08001 * 125.38181 * 179.80441 * 8 7 6 31 31 H 1.09004 * 110.35986 * 273.92116 * 12 10 2 32 32 H 1.08998 * 110.36795 * 36.13376 * 12 10 2 33 33 H 0.97001 * 120.00218 * 180.02562 * 17 16 14 34 34 H 1.08997 * 110.06783 * 241.87313 * 22 13 12 35 35 H 1.09008 * 109.84606 * 120.61186 * 22 13 12 36 36 H 0.96693 * 113.99557 * 63.84539 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3530 1.1682 0.0714 5 6 1.4045 2.4424 -0.0867 6 6 1.9502 3.6830 -0.2088 7 8 0.9313 4.5560 -0.2548 8 6 -0.2149 3.8683 -0.1549 9 7 0.0535 2.6010 -0.0536 10 6 2.1975 -1.2688 0.0006 11 1 3.2717 -1.0974 0.0694 12 6 1.7073 -2.1924 1.1436 13 7 2.0263 -3.5578 0.6885 14 6 2.2159 -4.6453 1.4990 15 1 2.1349 -4.5406 2.5708 16 6 2.5123 -5.8821 0.9428 17 7 2.6115 -6.0095 -0.3635 18 14 2.7716 -7.3653 2.0483 19 1 1.5402 -7.6138 2.8401 20 1 3.0738 -8.5569 1.2152 21 1 3.9076 -7.1043 2.9685 22 6 2.1028 -3.5606 -0.7827 23 6 1.8483 -2.1131 -1.2535 24 1 0.8034 -1.9763 -1.5318 25 8 2.7083 -1.7777 -2.3443 26 1 -0.3633 0.1019 1.0226 27 1 -0.3633 0.8347 -0.5995 28 1 -0.3633 -0.9365 -0.4231 29 1 3.0026 3.9200 -0.2612 30 1 -1.2052 4.2993 -0.1587 31 1 2.2390 -1.9667 2.0680 32 1 0.6328 -2.0801 1.2878 33 1 2.8182 -6.8739 -0.7522 34 1 1.3426 -4.2238 -1.1954 35 1 3.0935 -3.8852 -1.1011 36 1 2.5560 -2.3036 -3.1413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047321394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:21 Heat of formation + Delta-G solvation = -35.316199 kcal Electronic energy + Delta-G solvation = -22385.386535 eV Core-core repulsion = 18872.240373 eV Total energy + Delta-G solvation = -3513.146162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.37832 -41.17902 -39.40183 -36.77553 -36.50855 -35.68803 -33.78717 -31.45141 -30.37688 -29.07615 -27.88220 -26.57579 -24.89630 -23.65437 -22.34346 -21.96871 -20.65706 -19.03104 -19.02437 -18.41015 -17.75981 -17.60830 -17.23118 -16.61389 -16.23737 -15.95043 -15.81290 -15.34729 -14.81323 -14.52885 -14.42185 -14.26876 -14.04646 -13.68844 -13.38264 -13.18321 -13.03668 -12.73157 -12.68077 -12.35961 -12.11539 -11.90082 -11.73078 -11.52799 -11.11543 -10.94595 -10.77490 -10.22768 -9.69237 -8.98463 -7.88745 -5.27192 0.11326 1.10397 1.46270 1.50195 1.56028 1.65645 1.93086 2.18506 2.47940 3.04077 3.12067 3.32566 3.54674 3.69634 3.81207 3.89719 4.02050 4.05146 4.36550 4.40507 4.44779 4.55366 4.63163 4.73643 4.76643 4.91695 5.05488 5.30965 5.35269 5.41103 5.51527 5.63120 6.10487 6.23126 6.52831 6.81190 6.97103 7.02331 7.66931 8.30238 9.21004 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037241 B = 0.003982 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.678965 B = 7030.049648 C = 7222.563042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.585 5.585 3 C 0.591 3.409 4 O -0.578 6.578 5 C -0.098 4.098 6 C 0.033 3.967 7 O -0.195 6.195 8 C 0.201 3.799 9 N -0.491 5.491 10 C 0.144 3.856 11 H 0.082 0.918 12 C 0.136 3.864 13 N -0.621 5.621 14 C -0.250 4.250 15 H 0.086 0.914 16 C -0.060 4.060 17 N -0.950 5.950 18 Si 0.983 3.017 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.166 3.834 23 C 0.084 3.916 24 H 0.082 0.918 25 O -0.571 6.571 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.247 0.753 30 H 0.306 0.694 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.249 0.751 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 20.806 -2.066 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.314 5.314 3 C 0.380 3.620 4 O -0.458 6.458 5 C -0.216 4.216 6 C -0.042 4.042 7 O -0.080 6.080 8 C -0.027 4.027 9 N -0.221 5.221 10 C 0.039 3.961 11 H 0.100 0.900 12 C 0.010 3.990 13 N -0.348 5.348 14 C -0.379 4.379 15 H 0.104 0.896 16 C -0.254 4.254 17 N -0.598 5.598 18 Si 0.811 3.189 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.040 3.960 23 C 0.023 3.977 24 H 0.100 0.900 25 O -0.378 6.378 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.263 0.737 30 H 0.320 0.680 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.668 20.538 -1.565 22.347 hybrid contribution 0.654 -1.292 -0.042 1.449 sum -8.014 19.246 -1.607 20.909 Atomic orbital electron populations 1.22337 0.76461 1.04299 1.03532 1.47562 1.08749 1.04135 1.70969 1.17343 0.85826 0.82997 0.75822 1.90786 1.14620 1.87459 1.52976 1.21389 0.90843 0.94484 1.14864 1.25584 0.94789 0.86050 0.97804 1.84493 1.15993 1.39088 1.68432 1.29410 0.92371 0.84844 0.96080 1.70848 1.12384 1.19517 1.19305 1.21983 0.97021 0.82492 0.94634 0.89969 1.21830 0.98435 0.83806 0.94943 1.44561 1.83467 1.04406 1.02415 1.19445 1.41453 0.86848 0.90123 0.89647 1.25680 1.01710 1.00494 0.97494 1.70135 1.55562 1.23768 1.10315 0.85090 0.78278 0.78129 0.77429 1.19867 1.21836 1.20530 1.21634 0.98937 0.91529 0.83900 1.23329 0.93449 0.94109 0.86780 0.89993 1.86455 1.62239 1.64240 1.24870 0.91870 0.86644 0.91443 0.73689 0.67958 0.93846 0.93414 0.94132 0.95573 0.95988 0.75744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 8.22 127.77 1.05 3.06 16 2 N -0.58 -20.02 2.91 -818.66 -2.38 -22.40 16 3 C 0.59 20.46 7.67 86.67 0.66 21.12 16 4 O -0.58 -23.98 16.28 -4.06 -0.07 -24.05 16 5 C -0.10 -2.48 6.67 40.41 0.27 -2.21 16 6 C 0.03 0.60 11.95 67.32 0.80 1.40 16 7 O -0.19 -2.62 10.73 0.46 0.00 -2.61 16 8 C 0.20 2.12 13.19 130.52 1.72 3.85 16 9 N -0.49 -9.68 7.84 -305.16 -2.39 -12.07 16 10 C 0.14 5.92 3.17 46.39 0.15 6.07 16 11 H 0.08 3.95 7.01 -2.39 -0.02 3.93 16 12 C 0.14 5.94 6.79 86.86 0.59 6.53 16 13 N -0.62 -32.86 3.40 -691.23 -2.35 -35.21 16 14 C -0.25 -14.25 10.28 84.03 0.86 -13.38 16 15 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 16 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 17 N -0.95 -56.95 10.31 21.65 0.22 -56.73 16 18 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 C 0.17 8.36 5.16 86.67 0.45 8.81 16 23 C 0.08 3.37 3.86 31.78 0.12 3.50 16 24 H 0.08 2.91 6.47 -2.39 -0.02 2.89 16 25 O -0.57 -22.04 13.39 -148.98 -1.99 -24.03 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.12 2.76 5.25 -2.39 -0.01 2.75 16 28 H 0.07 1.79 6.37 -2.39 -0.02 1.77 16 29 H 0.25 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.31 -0.60 8.06 -2.91 -0.02 -0.62 16 31 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.05 1.91 6.95 -2.39 -0.02 1.89 16 33 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.03 1.41 7.52 -2.39 -0.02 1.39 16 35 H 0.02 1.27 7.29 -2.38 -0.02 1.25 16 36 H 0.39 11.58 9.12 -74.06 -0.68 10.91 16 Total: -1.00 -79.12 302.70 0.67 -78.45 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.45 Total: 15.01 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 7.15 Total: 35.75 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -6.90 Total: -126.41 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -2.06 Total: -50.69 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -79.12 0.67 -78.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047321394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.132 kcal (2) G-P(sol) polarization free energy of solvation -79.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds