Wall clock time and date at job start Tue Mar 31 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35312 * 126.66825 * 2 1 4 4 C 1.42267 * 103.92273 * 179.97438 * 3 2 1 5 5 C 1.48329 * 126.94014 * 180.02562 * 4 3 2 6 6 O 1.21491 * 120.00131 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99871 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99500 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.64189 * 34.30160 * 8 7 5 10 10 C 1.54321 * 110.72218 * 271.15678 * 8 7 5 11 11 N 1.47019 * 107.27531 * 219.26939 * 10 8 7 12 12 C 1.36934 * 125.65046 * 178.97751 * 11 10 8 13 13 H 1.08004 * 119.99872 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31616 * 120.00204 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47425 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47247 * 120.00114 * 16 14 12 19 19 H 1.48501 * 109.46963 * 239.99435 * 16 14 12 20 20 C 1.47431 * 108.70142 * 358.94050 * 11 10 8 21 21 C 1.55157 * 110.71610 * 157.44358 * 8 7 5 22 22 H 1.09001 * 111.00741 * 35.97140 * 21 8 7 23 23 O 1.42905 * 111.00350 * 272.11375 * 21 8 7 24 24 N 1.30989 * 106.12091 * 0.26088 * 4 3 2 25 25 O 1.20903 * 111.44176 * 359.53567 * 24 4 3 26 26 H 1.08997 * 109.47115 * 89.99769 * 1 2 3 27 27 H 1.09001 * 109.47590 * 210.00326 * 1 2 3 28 28 H 1.09003 * 109.47294 * 330.00281 * 1 2 3 29 29 H 1.08000 * 128.03946 * 359.97438 * 3 2 1 30 30 H 0.96996 * 120.00112 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.88480 * 338.69050 * 10 8 7 32 32 H 1.09003 * 109.88132 * 99.69456 * 10 8 7 33 33 H 0.96999 * 120.00486 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.36190 * 142.96411 * 20 11 10 35 35 H 1.08999 * 110.36356 * 265.28933 * 20 11 10 36 36 H 0.96704 * 113.99865 * 180.02562 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0853 0.0000 4 6 3.6271 0.5353 0.0006 5 6 4.9076 1.2840 0.0014 6 8 4.9009 2.4989 0.0011 7 7 6.0785 0.6165 0.0025 8 6 7.3431 1.3560 0.0027 9 1 7.2492 2.2778 0.5769 10 6 7.8006 1.6559 -1.4404 11 7 9.2597 1.4805 -1.4812 12 6 10.0513 1.6339 -2.5879 13 1 9.6089 1.9064 -3.5348 14 6 11.4223 1.4380 -2.4932 15 7 11.9614 1.1054 -1.3395 16 14 12.5022 1.6479 -4.0029 17 1 11.6591 2.0218 -5.1666 18 1 13.5021 2.7168 -3.7516 19 1 13.2043 0.3713 -4.2906 20 6 9.7295 1.1130 -0.1329 21 6 8.4932 0.4765 0.5605 22 1 8.3697 -0.5643 0.2611 23 8 8.5824 0.5913 1.9822 24 7 3.4760 -0.7658 -0.0048 25 8 2.3072 -1.0751 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 2.0302 2.1271 -0.0004 30 1 6.0838 -0.3535 0.0023 31 1 7.3242 0.9613 -2.1322 32 1 7.5404 2.6805 -1.7063 33 1 12.9194 0.9689 -1.2732 34 1 10.5417 0.3891 -0.1986 35 1 10.0540 2.0004 0.4106 36 1 9.2874 0.0595 2.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076717874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:01 Heat of formation + Delta-G solvation = 10.704701 kcal Electronic energy + Delta-G solvation = -21741.739486 eV Core-core repulsion = 18230.588940 eV Total energy + Delta-G solvation = -3511.150546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.25192 -39.70713 -37.81873 -35.11609 -34.32181 -34.25517 -33.43907 -31.68704 -28.56017 -28.11710 -27.15951 -25.14120 -23.95388 -22.79790 -20.77209 -20.32612 -19.85791 -18.01679 -17.78709 -17.17980 -17.01793 -16.58752 -15.68546 -14.92432 -14.71959 -14.43564 -14.02199 -13.87150 -13.85264 -13.63102 -13.30678 -12.93706 -12.76154 -12.38931 -11.98047 -11.67501 -11.53254 -11.33036 -11.03541 -10.86714 -10.59313 -10.29019 -10.15088 -9.95374 -9.76227 -9.65679 -9.33803 -8.89841 -8.74555 -6.94810 -5.74384 -3.17036 0.98257 1.50177 2.71354 3.01414 3.19425 3.36504 3.42315 3.44864 3.86046 4.29804 4.39651 4.58124 4.70957 4.90326 5.00753 5.05848 5.22154 5.28628 5.39461 5.44305 5.58597 5.61619 5.71277 5.80573 6.03699 6.13493 6.36344 6.61849 6.82954 7.28865 7.45502 7.53245 7.69423 7.86154 8.07201 8.16514 8.23916 9.11544 9.71792 10.33949 11.30017 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.003616 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.477012 B = 7742.196539 C = 8156.817431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.038 4.038 3 C -0.184 4.184 4 C -0.018 4.018 5 C 0.596 3.404 6 O -0.522 6.522 7 N -0.697 5.697 8 C 0.140 3.860 9 H 0.104 0.896 10 C 0.130 3.870 11 N -0.600 5.600 12 C -0.223 4.223 13 H 0.081 0.919 14 C -0.011 4.011 15 N -0.924 5.924 16 Si 0.919 3.081 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.131 3.869 21 C 0.067 3.933 22 H 0.063 0.937 23 O -0.565 6.565 24 N -0.332 5.332 25 O 0.120 5.880 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.181 0.819 30 H 0.405 0.595 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.253 0.747 34 H 0.114 0.886 35 H 0.027 0.973 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 -4.910 4.862 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.380 3.620 6 O -0.396 6.396 7 N -0.347 5.347 8 C 0.036 3.964 9 H 0.122 0.878 10 C 0.003 3.997 11 N -0.327 5.327 12 C -0.351 4.351 13 H 0.099 0.901 14 C -0.206 4.206 15 N -0.573 5.573 16 Si 0.749 3.251 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.217 1.217 20 C 0.005 3.995 21 C 0.006 3.994 22 H 0.081 0.919 23 O -0.370 6.370 24 N -0.033 5.033 25 O 0.045 5.955 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.198 0.802 30 H 0.240 0.760 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.045 0.955 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -19.401 -4.607 4.694 20.486 hybrid contribution 0.725 0.063 -0.680 0.996 sum -18.676 -4.545 4.014 19.636 Atomic orbital electron populations 1.20359 0.83420 1.04857 1.04342 1.24497 0.96545 0.85510 1.03560 1.22454 0.89727 1.01585 1.06846 1.23601 0.96964 0.90070 1.07151 1.16870 0.81570 0.86453 0.77156 1.90805 1.86618 1.12399 1.49758 1.45872 1.05199 1.10587 1.73059 1.22142 0.80451 0.96009 0.97825 0.87765 1.21620 0.86805 0.98907 0.92390 1.44286 1.00189 1.81649 1.06611 1.19161 0.88422 1.39868 0.87611 0.90091 1.24809 0.96515 1.01840 0.97451 1.69737 1.10691 1.54175 1.22654 0.85934 0.80342 0.77340 0.81495 1.20431 1.21624 1.21671 1.22642 0.93369 0.99473 0.84026 1.23731 0.97309 0.97763 0.80580 0.91900 1.86408 1.58008 1.72500 1.20089 1.74181 0.97154 1.15695 1.16319 1.84774 1.11147 1.33467 1.66158 0.89191 0.89628 0.88792 0.80181 0.76041 0.95131 0.94604 0.93603 0.86837 0.95496 0.77455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.45 36.01 0.38 0.09 16 2 C -0.04 -0.34 7.47 -35.35 -0.26 -0.60 16 3 C -0.18 -2.05 10.92 -39.08 -0.43 -2.48 16 4 C -0.02 -0.27 7.19 -82.53 -0.59 -0.86 16 5 C 0.60 10.33 7.85 -12.11 -0.10 10.23 16 6 O -0.52 -10.43 16.64 5.37 0.09 -10.34 16 7 N -0.70 -11.90 5.11 -52.82 -0.27 -12.17 16 8 C 0.14 2.76 3.00 -66.09 -0.20 2.56 16 9 H 0.10 2.23 7.62 -51.93 -0.40 1.83 16 10 C 0.13 2.90 6.99 -3.07 -0.02 2.87 16 11 N -0.60 -15.51 3.40 -169.76 -0.58 -16.09 16 12 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 13 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 14 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 15 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 16 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 C 0.13 3.14 5.65 -2.26 -0.01 3.13 16 21 C 0.07 1.29 4.07 -24.32 -0.10 1.19 16 22 H 0.06 1.14 8.01 -51.93 -0.42 0.73 16 23 O -0.57 -9.97 13.48 -35.23 -0.48 -10.44 16 24 N -0.33 -4.52 11.84 33.29 0.39 -4.13 16 25 O 0.12 1.33 11.18 17.24 0.19 1.53 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.40 6.22 8.30 -40.82 -0.34 5.88 16 31 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.38 5.06 9.12 45.56 0.42 5.47 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -33.45 313.82 -5.50 -38.95 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.54 Total: 7.53 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -1.59 Total: 9.37 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.11 Total: -58.25 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.19 Total: -19.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.45 -5.50 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076717874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.659 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds