Wall clock time and date at job start Tue Mar 31 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35312 * 126.66825 * 2 1 4 4 C 1.42267 * 103.92273 * 179.97438 * 3 2 1 5 5 C 1.48329 * 126.94014 * 180.02562 * 4 3 2 6 6 O 1.21491 * 120.00131 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99871 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99500 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.64189 * 34.30160 * 8 7 5 10 10 C 1.54321 * 110.72218 * 271.15678 * 8 7 5 11 11 N 1.47019 * 107.27531 * 219.26939 * 10 8 7 12 12 C 1.36934 * 125.65046 * 178.97751 * 11 10 8 13 13 H 1.08004 * 119.99872 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31616 * 120.00204 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47425 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47247 * 120.00114 * 16 14 12 19 19 H 1.48501 * 109.46963 * 239.99435 * 16 14 12 20 20 C 1.47431 * 108.70142 * 358.94050 * 11 10 8 21 21 C 1.55157 * 110.71610 * 157.44358 * 8 7 5 22 22 H 1.09001 * 111.00741 * 35.97140 * 21 8 7 23 23 O 1.42905 * 111.00350 * 272.11375 * 21 8 7 24 24 N 1.30989 * 106.12091 * 0.26088 * 4 3 2 25 25 O 1.20903 * 111.44176 * 359.53567 * 24 4 3 26 26 H 1.08997 * 109.47115 * 89.99769 * 1 2 3 27 27 H 1.09001 * 109.47590 * 210.00326 * 1 2 3 28 28 H 1.09003 * 109.47294 * 330.00281 * 1 2 3 29 29 H 1.08000 * 128.03946 * 359.97438 * 3 2 1 30 30 H 0.96996 * 120.00112 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.88480 * 338.69050 * 10 8 7 32 32 H 1.09003 * 109.88132 * 99.69456 * 10 8 7 33 33 H 0.96999 * 120.00486 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.36190 * 142.96411 * 20 11 10 35 35 H 1.08999 * 110.36356 * 265.28933 * 20 11 10 36 36 H 0.96704 * 113.99865 * 180.02562 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0853 0.0000 4 6 3.6271 0.5353 0.0006 5 6 4.9076 1.2840 0.0014 6 8 4.9009 2.4989 0.0011 7 7 6.0785 0.6165 0.0025 8 6 7.3431 1.3560 0.0027 9 1 7.2492 2.2778 0.5769 10 6 7.8006 1.6559 -1.4404 11 7 9.2597 1.4805 -1.4812 12 6 10.0513 1.6339 -2.5879 13 1 9.6089 1.9064 -3.5348 14 6 11.4223 1.4380 -2.4932 15 7 11.9614 1.1054 -1.3395 16 14 12.5022 1.6479 -4.0029 17 1 11.6591 2.0218 -5.1666 18 1 13.5021 2.7168 -3.7516 19 1 13.2043 0.3713 -4.2906 20 6 9.7295 1.1130 -0.1329 21 6 8.4932 0.4765 0.5605 22 1 8.3697 -0.5643 0.2611 23 8 8.5824 0.5913 1.9822 24 7 3.4760 -0.7658 -0.0048 25 8 2.3072 -1.0751 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 2.0302 2.1271 -0.0004 30 1 6.0838 -0.3535 0.0023 31 1 7.3242 0.9613 -2.1322 32 1 7.5404 2.6805 -1.7063 33 1 12.9194 0.9689 -1.2732 34 1 10.5417 0.3891 -0.1986 35 1 10.0540 2.0004 0.4106 36 1 9.2874 0.0595 2.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076717874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:01 Heat of formation + Delta-G solvation = -16.243024 kcal Electronic energy + Delta-G solvation = -21742.908027 eV Core-core repulsion = 18230.588940 eV Total energy + Delta-G solvation = -3512.319087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.18992 -41.18537 -39.45887 -36.76289 -35.82161 -35.21594 -34.38074 -33.55694 -30.37283 -28.93594 -28.69852 -26.81836 -25.42512 -23.79063 -22.55058 -21.92346 -21.24764 -19.19254 -18.95289 -18.59271 -18.52840 -17.88850 -17.36808 -16.67683 -16.21152 -15.81540 -15.54713 -15.17229 -14.89668 -14.74853 -14.43759 -14.10751 -13.93579 -13.82130 -13.34001 -13.28258 -13.23089 -12.90095 -12.77477 -12.44086 -12.05996 -11.98235 -11.69969 -11.60826 -11.51949 -11.01772 -10.81805 -10.44563 -10.39066 -9.02315 -7.85495 -5.32370 -0.02339 0.64613 1.46166 1.47256 1.57489 1.63776 1.92783 2.05499 2.43685 2.77754 2.98880 3.26367 3.46353 3.53456 3.75992 3.90641 3.93984 4.07273 4.11847 4.32416 4.34962 4.48771 4.72633 4.78697 4.79931 4.82584 4.88028 5.21735 5.26995 5.32659 5.40225 5.62709 6.14602 6.16490 6.78301 6.79820 6.99425 7.00935 7.64001 8.26311 9.16708 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.003616 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.477012 B = 7742.196539 C = 8156.817431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 C -0.201 4.201 4 C -0.046 4.046 5 C 0.597 3.403 6 O -0.555 6.555 7 N -0.690 5.690 8 C 0.153 3.847 9 H 0.087 0.913 10 C 0.132 3.868 11 N -0.618 5.618 12 C -0.246 4.246 13 H 0.082 0.918 14 C -0.060 4.060 15 N -0.946 5.946 16 Si 0.986 3.014 17 H -0.269 1.269 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.136 3.864 21 C 0.091 3.909 22 H 0.084 0.916 23 O -0.567 6.567 24 N -0.348 5.348 25 O 0.129 5.871 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.193 0.807 30 H 0.415 0.585 31 H 0.037 0.963 32 H 0.022 0.978 33 H 0.251 0.749 34 H 0.093 0.907 35 H -0.003 1.003 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.237 -6.042 4.681 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C -0.223 4.223 4 C -0.204 4.204 5 C 0.382 3.618 6 O -0.432 6.432 7 N -0.341 5.341 8 C 0.048 3.952 9 H 0.105 0.895 10 C 0.005 3.995 11 N -0.346 5.346 12 C -0.374 4.374 13 H 0.099 0.901 14 C -0.253 4.253 15 N -0.595 5.595 16 Si 0.813 3.187 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.212 1.212 20 C 0.010 3.990 21 C 0.030 3.970 22 H 0.102 0.898 23 O -0.375 6.375 24 N -0.048 5.048 25 O 0.051 5.949 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.210 0.790 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.015 0.985 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -21.593 -5.769 4.532 22.805 hybrid contribution 1.295 0.402 -0.589 1.479 sum -20.297 -5.367 3.942 21.362 Atomic orbital electron populations 1.20688 0.79487 1.06712 1.06035 1.25292 0.98154 0.83754 1.00232 1.22696 0.88662 1.02967 1.08016 1.23337 0.96556 0.90756 1.09722 1.17241 0.82388 0.86258 0.75931 1.90778 1.87262 1.13930 1.51200 1.45694 1.04367 1.10904 1.73121 1.21721 0.81845 0.95830 0.95815 0.89532 1.21648 0.85252 0.98236 0.94350 1.44529 1.01528 1.81765 1.06767 1.19487 0.89252 1.40276 0.88424 0.90060 1.25655 0.97643 1.01680 1.00351 1.69950 1.10697 1.54538 1.24312 0.84909 0.78277 0.77037 0.78434 1.19330 1.21811 1.21242 1.22452 0.95052 0.97847 0.83693 1.23331 0.94415 0.98067 0.81175 0.89832 1.86380 1.59022 1.73308 1.18740 1.74176 0.98493 1.15242 1.16846 1.84744 1.10694 1.34219 1.65236 0.87321 0.87785 0.86891 0.79007 0.74839 0.94498 0.95967 0.93872 0.88916 0.98547 0.75068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 71.24 0.74 0.48 16 2 C -0.01 -0.17 7.47 25.01 0.19 0.02 16 3 C -0.20 -4.16 10.92 22.60 0.25 -3.91 16 4 C -0.05 -1.30 7.19 42.96 0.31 -0.99 16 5 C 0.60 20.74 7.85 86.93 0.68 21.43 16 6 O -0.55 -22.64 16.64 -3.69 -0.06 -22.70 16 7 N -0.69 -23.44 5.11 -439.31 -2.25 -25.69 16 8 C 0.15 6.11 3.00 46.18 0.14 6.25 16 9 H 0.09 3.79 7.62 -2.39 -0.02 3.78 16 10 C 0.13 6.01 6.99 86.73 0.61 6.61 16 11 N -0.62 -32.74 3.40 -691.01 -2.35 -35.09 16 12 C -0.25 -13.97 10.27 84.03 0.86 -13.11 16 13 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 14 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 15 N -0.95 -55.08 10.09 21.65 0.22 -54.86 16 16 Si 0.99 45.37 29.55 68.60 2.03 47.39 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 C 0.14 6.68 5.65 87.02 0.49 7.17 16 21 C 0.09 3.49 4.07 32.16 0.13 3.62 16 22 H 0.08 2.92 8.01 -2.39 -0.02 2.90 16 23 O -0.57 -19.45 13.48 -148.98 -2.01 -21.46 16 24 N -0.35 -9.02 11.84 -49.51 -0.59 -9.60 16 25 O 0.13 2.58 11.18 71.87 0.80 3.38 16 26 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.19 3.37 8.06 -2.91 -0.02 3.34 16 30 H 0.41 12.40 8.30 -92.71 -0.77 11.63 16 31 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.09 4.98 5.87 -2.39 -0.01 4.97 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.40 10.09 9.12 -74.05 -0.68 9.41 16 Total: -1.00 -73.83 313.82 0.36 -73.48 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.31 Total: 20.50 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 4.87 Total: 24.64 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -4.96 Total: -125.24 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.27 Total: -40.77 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -73.83 0.36 -73.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076717874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.235 kcal (2) G-P(sol) polarization free energy of solvation -73.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds